Andreas Tille pushed to branch master at Debian Med / community / helper-scripts
Commits:
fe60b79e by Andreas Tille at 2022-06-05T13:42:45+00:00
automatic update
- - - - -
3 changed files:
- debian-med-tests.txt
- debian-science-tests.txt
- outdated_med-packages.txt
Changes:
=====================================
debian-med-tests.txt
=====================================
@@ -1,23 +1,23 @@
-Last-Update: Sun, 05 Jun 2022 01:42:04 +0000
+Last-Update: Sun, 05 Jun 2022 13:42:03 +0000
Source | Vote | Tasks | Tags
-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk | 168 | {imaging,covid-19} |
- orthanc | 94 | {practice,imaging,covid-19} |
- orthanc-wsi | 48 | {oncology,covid-19,imaging,his,practice,laboratory} |
- node-shiny-server | 38 | {epi,covid-19} |
- amide | 26 | {imaging} |
- dicomscope | 26 | {imaging} |
+ dcmtk | 167 | {covid-19,imaging} |
+ orthanc | 94 | {imaging,covid-19,practice} |
+ orthanc-wsi | 49 | {covid-19,imaging,his,laboratory,oncology,practice} |
+ node-shiny-server | 36 | {covid-19,epi} |
nipype | 26 | {imaging-dev,imaging} |
+ amide | 25 | {imaging} |
+ dicomscope | 25 | {imaging} |
dicom3tools | 19 | {imaging} |
orthanc-webviewer | 17 | {imaging} |
gnumed-server | 14 | {practice,covid-19} |
- gdcm | 11 | {covid-19,imaging} |
- orthanc-dicomweb | 11 | {imaging,covid-19} |
+ gdcm | 11 | {imaging,covid-19} |
+ invesalius | 11 | {imaging} |
+ orthanc-dicomweb | 11 | {covid-19,imaging} |
biojava-live | 10 | {bio-dev} |
gdcm | 10 | {imaging-dev} |
- invesalius | 10 | {imaging} |
- mrtrix3 | 10 | {imaging} |
+ mrtrix3 | 9 | {imaging} |
adun.app | 8 | {bio} |
orthanc-postgresql | 8 | {imaging} |
pixelmed | 8 | {imaging} |
@@ -26,14 +26,13 @@ Last-Update: Sun, 05 Jun 2022 01:42:04 +0000
bio-tradis | 6 | {bio,bio-dev} |
canu | 6 | {bio} |
libminc | 6 | {imaging-dev} |
- obitools | 6 | {bio} |
plastimatch | 6 | {imaging} |
- salmon | 6 | {covid-19,bio} |
+ salmon | 6 | {bio,covid-19} |
treeview | 6 | {bio,bio-phylogeny} |
dicompyler | 5 | {oncology} |
elastix | 5 | {imaging} |
getdata | 5 | {bio} |
- nifti2dicom | 5 | {imaging} |
+ obitools | 5 | {bio} |
orthanc-gdcm | 5 | {imaging} |
orthanc-mysql | 5 | {imaging} |
oscar | 5 | {tools,practice,data} |
@@ -42,42 +41,43 @@ Last-Update: Sun, 05 Jun 2022 01:42:04 +0000
cmtk | 4 | {imaging} |
fastml | 4 | {bio} |
ghmm | 4 | {bio} |
- king | 4 | {imaging,typesetting} |
+ king | 4 | {typesetting,imaging} |
lamarc | 4 | {bio} |
libbio-mage-utils-perl | 4 | {bio-dev} |
- libdivsufsort | 4 | {bio-dev} |
libncl | 4 | {bio} |
mhap | 4 | {bio,bio-ngs} |
mia | 4 | {imaging} |
+ nifti2dicom | 4 | {imaging} |
phyutility | 4 | {bio,cloud} |
+ python-wdlparse | 4 | {bio-dev} |
rambo-k | 4 | {bio} |
rdp-alignment | 4 | {bio} |
runcircos-gui | 4 | {bio} |
saint | 4 | {bio} |
- spread-phy | 4 | {bio-phylogeny,bio} |
+ spread-phy | 4 | {bio,bio-phylogeny} |
stacks | 4 | {bio} |
staden | 4 | {bio} |
anfo | 3 | {cloud,bio} |
arden | 3 | {bio,cloud} |
assemblytics | 3 | {bio} |
bart-view | 3 | {imaging} |
- beast-mcmc | 3 | {bio-phylogeny,bio} |
+ beast-mcmc | 3 | {bio,bio-phylogeny} |
biomaj3-cli | 3 | {cloud} |
bitseq | 3 | {bio} |
blimps | 3 | {bio} |
brig | 3 | {bio} |
- cat-bat | 3 | {bio,covid-19} |
+ cat-bat | 3 | {covid-19,bio} |
clonalframeml | 3 | {covid-19,bio} |
clonalorigin | 3 | {bio} |
delly | 3 | {bio,covid-19} |
embassy-domainatrix | 3 | {bio,cloud} |
emboss-explorer | 3 | {bio} |
gatb-core | 3 | {bio} |
- gifticlib | 3 | {imaging-dev} |
hinge | 3 | {bio} |
ipig | 3 | {bio} |
- jmodeltest | 3 | {bio,bio-phylogeny} |
+ jmodeltest | 3 | {bio-phylogeny,bio} |
libchado-perl | 3 | {bio-dev} |
+ libdivsufsort | 3 | {bio-dev} |
libpal-java | 3 | {bio-dev} |
librdp-taxonomy-tree-java | 3 | {bio-dev} |
libsbml | 3 | {bio-dev} |
@@ -85,10 +85,8 @@ Last-Update: Sun, 05 Jun 2022 01:42:04 +0000
melting | 3 | {bio,cloud} |
piler | 3 | {bio} |
proalign | 3 | {bio,bio-phylogeny} |
- python-wdlparse | 3 | {bio-dev} |
- qcumber | 3 | {bio} |
rdp-classifier | 3 | {bio} |
- rtax | 3 | {bio,cloud} |
+ rtax | 3 | {cloud,bio} |
sga | 3 | {bio} |
sift | 3 | {bio} |
soapaligner | 3 | {bio} |
@@ -99,11 +97,10 @@ Last-Update: Sun, 05 Jun 2022 01:42:04 +0000
trace2dbest | 3 | {bio} |
tracetuner | 3 | {bio} |
tvc | 3 | {bio} |
- zalign | 3 | {bio,cloud} |
- ctn | 2 | {imaging-dev} |
- cufflinks | 2 | {bio,cloud} |
- dextractor | 2 | {bio,covid-19} |
- embassy-domalign | 2 | {cloud,bio} |
+ zalign | 3 | {cloud,bio} |
+ cufflinks | 2 | {cloud,bio} |
+ dextractor | 2 | {covid-19,bio} |
+ embassy-domalign | 2 | {bio,cloud} |
embassy-domsearch | 2 | {bio,cloud} |
emmax | 2 | {bio} |
htscodecs | 2 | {bio-dev,covid-19} |
@@ -112,15 +109,16 @@ Last-Update: Sun, 05 Jun 2022 01:42:04 +0000
metaphlan2 | 2 | {bio} |
orthanc-python | 2 | {covid-19} |
papyrus | 2 | {imaging-dev} |
- pigx-rnaseq | 2 | {covid-19,bio} |
placnet | 2 | {bio} |
plasmidseeker | 2 | {bio} |
pscan-chip | 2 | {bio} |
+ qcumber | 2 | {bio} |
skesa | 2 | {bio} |
- thesias | 2 | {covid-19,bio} |
+ thesias | 2 | {bio,covid-19} |
tophat-recondition | 2 | {covid-19,bio} |
acedb | 1 | {bio,cloud} |
bambamc | 1 | {bio-dev} |
+ ctn | 1 | {imaging-dev} |
cutesv | 1 | {bio} |
emperor | 1 | {bio} |
gatb-core | 1 | {bio-dev} |
@@ -143,15 +141,16 @@ Last-Update: Sun, 05 Jun 2022 01:42:04 +0000
mssstest | 1 | {tools} |
opencfu | 1 | {laboratory} |
pbseqlib | 1 | {bio-dev} |
+ pigx-rnaseq | 1 | {bio,covid-19} |
pique | 1 | {bio} |
- plasmidid | 1 | {covid-19,bio} |
- pplacer | 1 | {bio,bio-phylogeny,covid-19} |
- python-seqcluster | 1 | {covid-19,bio-dev} |
+ plasmidid | 1 | {bio,covid-19} |
+ pplacer | 1 | {covid-19,bio,bio-phylogeny} |
+ python-seqcluster | 1 | {bio-dev,covid-19} |
seq-gen | 1 | {bio} |
srf | 1 | {bio-dev} |
tipp | 1 | {covid-19,bio} |
varna | 1 | {bio} |
- varscan | 1 | {covid-19,bio} |
+ varscan | 1 | {bio,covid-19} |
biojava4-live | 0 | {bio-dev} |
biosyntax | 0 | {bio} |
camp | 0 | {imaging-dev} |
@@ -184,12 +183,12 @@ Last-Update: Sun, 05 Jun 2022 01:42:04 +0000
sight | 0 | {imaging-dev} |
simpleitk | 0 | {imaging-dev} |
smrtanalysis | 0 | {bio,covid-19} |
- vienna-rna | 0 | {covid-19,bio} |
+ vienna-rna | 0 | {bio,covid-19} |
xdffileio | 0 | {imaging-dev} |
xxsds-dynamic | 0 | {bio-dev} |
- libmaus2 | -1 | {covid-19,bio-dev} |
+ libmaus2 | -1 | {bio-dev,covid-19} |
malt | -1 | {bio} |
megan-ce | -1 | {bio} |
rockhopper | -1 | {bio} |
-(219 rows)
+(218 rows)
=====================================
debian-science-tests.txt
=====================================
@@ -1,29 +1,29 @@
-Last-Update: Sun, 05 Jun 2022 01:42:04 +0000
+Last-Update: Sun, 05 Jun 2022 13:42:04 +0000
Source | Vote | Tasks | Tags
-----------------------------------------+--------+----------------------------------------------------------------------------------+--------------------------------------------------------------------
- gts | 2954 | {viewing} |
- sympy | 1788 | {physics,nanoscale-physics} |
- armadillo | 201 | {mathematics-dev} |
- suitesparse | 146 | {mathematics-dev,numericalcomputation} |
- python-pyqtgraph | 129 | {viewing} |
+ gts | 2951 | {viewing} |
+ sympy | 1773 | {physics,nanoscale-physics} |
+ armadillo | 197 | {mathematics-dev} |
+ suitesparse | 150 | {mathematics-dev,numericalcomputation} |
+ python-pyqtgraph | 127 | {viewing} |
atlas | 88 | {mathematics-dev} |
nltk | 86 | {linguistics} |
- arpack | 73 | {mathematics-dev} |
- cypari2 | 50 | {mathematics-dev} |
- arduino-mk | 45 | {robotics} |
- pyzo | 45 | {numericalcomputation} |
- imview | 43 | {viewing} |
- fftw | 36 | {mathematics-dev,meteorology-dev,physics-dev} |
+ arpack | 69 | {mathematics-dev} |
+ cypari2 | 49 | {mathematics-dev} |
+ pyzo | 47 | {numericalcomputation} |
+ arduino-mk | 44 | {robotics} |
+ imview | 40 | {viewing} |
+ fftw | 35 | {mathematics-dev,meteorology-dev,physics-dev} |
rubiks | 35 | {geometry,mathematics} |
eclib | 34 | {mathematics} |
flintqs | 33 | {mathematics} |
- sketch | 27 | {typesetting} |
+ sketch | 26 | {typesetting} |
feedgnuplot | 23 | {viewing} |
bossa | 22 | {devices} |
cernlib | 22 | {highenergy-physics} |
- libmatio | 21 | {mathematics-dev} |
geg | 20 | {viewing} |
+ libmatio | 20 | {mathematics-dev} |
scalapack | 20 | {nanoscale-physics-dev} |
flann | 19 | {mathematics-dev,engineering-dev} |
gts | 18 | {viewing-dev} |
@@ -31,31 +31,30 @@ Last-Update: Sun, 05 Jun 2022 01:42:04 +0000
ntl | 17 | {mathematics-dev} |
cernlib | 16 | {highenergy-physics-dev} |
fftw | 16 | {mathematics-dev,meteorology-dev,physics-dev} |
- guidata | 16 | {dataacquisition-dev} |
auto-07p | 15 | {mathematics} |
+ guidata | 15 | {dataacquisition-dev} |
opencascade | 15 | {simulations} |
picosat | 15 | {logic} |
ppl | 15 | {numericalcomputation} |
- ros-ros-environment | 15 | {robotics-dev} |
vitables | 15 | {numericalcomputation} |
coinor-symphony | 14 | {mathematics,logic,numericalcomputation} |
form | 14 | {mathematics} |
gfsview | 14 | {viewing} |
- guiqwt | 14 | {numericalcomputation,viewing} |
libm4ri | 14 | {mathematics-dev} |
matlab-support | 14 | {mathematics,numericalcomputation} |
+ ros-ros-environment | 14 | {robotics-dev} |
apophenia | 13 | {statistics} |
getdp | 13 | {engineering,simulations,mathematics} |
+ guiqwt | 13 | {numericalcomputation,viewing} |
mathgl | 13 | {viewing} |
- opticalraytracer | 13 | {physics} |
polylib | 13 | {mathematics} |
rheolef | 13 | {mathematics} |
debian-science | 12 | {nanoscale-physics,mathematics,physics,economics,machine-learning} |
dune-uggrid | 12 | {mathematics-dev} |
neuron | 12 | {highenergy-physics-dev} |
+ opticalraytracer | 12 | {physics} |
debian-science | 11 | {physics,nanoscale-physics,economics,statistics} |
ipe-tools | 11 | {typesetting} |
- lxi-tools | 11 | {engineering,dataacquisition} |
alberta | 10 | {engineering-dev} |
cliquer | 10 | {mathematics} |
python-escript | 10 | {numericalcomputation,engineering,simulations} |
@@ -64,6 +63,7 @@ Last-Update: Sun, 05 Jun 2022 01:42:04 +0000
jeuclid | 9 | {viewing,typesetting} |
libcgns | 9 | {engineering} |
lrcalc | 9 | {mathematics} |
+ lxi-tools | 9 | {engineering,dataacquisition} |
pcl | 9 | {robotics-dev} |
scram | 9 | {engineering} |
tango | 9 | {dataacquisition} |
@@ -92,27 +92,24 @@ Last-Update: Sun, 05 Jun 2022 01:42:04 +0000
psurface | 6 | {numericalcomputation} |
astk | 5 | {engineering} |
cernlib | 5 | {highenergy-physics} |
- debian-science | 5 | {electrophysiology} |
dxflib | 5 | {engineering-dev} |
- etsf-io | 5 | {nanoscale-physics,physics} |
frog | 5 | {linguistics} |
gf2x | 5 | {mathematics-dev} |
harp | 5 | {meteorology} |
irstlm | 5 | {linguistics} |
- libgetdata | 5 | {dataacquisition} |
libmatheval | 5 | {mathematics-dev} |
qd | 5 | {mathematics-dev} |
teem | 5 | {imageanalysis} |
apertium-streamparser | 4 | {linguistics} |
- cbflib | 4 | {nanoscale-physics} |
cimg | 4 | {imageanalysis-dev} | {x11::library}
debian-science | 4 | {tools} |
debian-science | 4 | {electrophysiology} |
- debian-science | 4 | {psychophysics} |
dimbl | 4 | {linguistics} |
dune-localfunctions | 4 | {mathematics-dev} |
+ etsf-io | 4 | {nanoscale-physics,physics} |
+ hpcc | 4 | {numericalcomputation,distributedcomputing} |
libcgns | 4 | {engineering-dev} |
- libgetdata | 4 | {dataacquisition-dev} |
+ libgetdata | 4 | {dataacquisition} |
libitpp | 4 | {mathematics-dev,engineering-dev} |
morse-simulator | 4 | {robotics} |
neuron | 4 | {highenergy-physics-dev} |
@@ -123,15 +120,14 @@ Last-Update: Sun, 05 Jun 2022 01:42:04 +0000
taurus | 4 | {dataacquisition} |
timbl | 4 | {linguistics} |
timblserver | 4 | {linguistics} |
- cbflib | 3 | {nanoscale-physics-dev} |
+ cbflib | 3 | {nanoscale-physics} |
clhep | 3 | {highenergy-physics-dev} |
- coda | 3 | {meteorology} |
coda | 3 | {meteorology-dev} |
code-saturne | 3 | {engineering-dev,mathematics-dev} |
- debian-science | 3 | {nanoscale-physics-dev} |
debian-science | 3 | {economics} |
+ debian-science | 3 | {psychophysics} |
+ debian-science | 3 | {nanoscale-physics-dev} |
fastjet | 3 | {highenergy-physics-dev} |
- hpcc | 3 | {numericalcomputation,distributedcomputing} |
libgetdata | 3 | {dataacquisition-dev} |
libgtkdatabox | 3 | {engineering-dev,viewing-dev} |
liblbfgs | 3 | {mathematics-dev} |
@@ -144,50 +140,51 @@ Last-Update: Sun, 05 Jun 2022 01:42:04 +0000
qwtplot3d | 3 | {viewing-dev} |
ros-opencv-apps | 3 | {robotics} |
sardana | 3 | {dataacquisition} |
- tango | 3 | {dataacquisition-dev} |
x13as | 3 | {economics} |
apophenia | 2 | {statistics} |
- asl | 2 | {physics-dev} |
+ cbflib | 2 | {nanoscale-physics-dev} |
cernlib | 2 | {highenergy-physics} |
cld2 | 2 | {linguistics} |
- clipper | 2 | {nanoscale-physics-dev} |
+ coda | 2 | {meteorology} |
cqrlib | 2 | {mathematics-dev} |
cvector | 2 | {mathematics-dev} |
debian-science | 2 | {physics} |
debian-science | 2 | {neuroscience-cognitive} |
gemmlowp | 2 | {mathematics-dev} |
itsol | 2 | {mathematics-dev} |
- jhdf | 2 | {engineering-dev} |
- jhdf | 2 | {engineering} |
- libccp4 | 2 | {nanoscale-physics-dev} |
- liblxi | 2 | {dataacquisition-dev,engineering-dev} |
+ libgetdata | 2 | {dataacquisition-dev} |
looptools | 2 | {highenergy-physics-dev} |
mbtserver | 2 | {linguistics} |
neartree | 2 | {numericalcomputation,mathematics-dev} |
pycollada | 2 | {engineering-dev} |
- python-aws-xray-sdk | 2 | {dataacquisition-dev} |
sparskit | 2 | {mathematics-dev} |
- ssm | 2 | {nanoscale-physics} |
+ tango | 2 | {dataacquisition-dev} |
apriltag | 1 | {robotics-dev} |
+ asl | 1 | {physics-dev} |
cernlib | 1 | {highenergy-physics} |
+ clipper | 1 | {nanoscale-physics-dev} |
coda | 1 | {meteorology-dev} |
collada-dom | 1 | {viewing-dev} |
dune-functions | 1 | {mathematics-dev} |
dune-typetree | 1 | {mathematics-dev} |
frogdata | 1 | {linguistics} |
+ jhdf | 1 | {engineering-dev} |
+ jhdf | 1 | {engineering} |
+ libccp4 | 1 | {nanoscale-physics-dev} |
libdogleg | 1 | {mathematics-dev} |
+ liblxi | 1 | {dataacquisition-dev,engineering-dev} |
liborigin2 | 1 | {viewing-dev} |
+ libvigraimpex | 1 | {imageanalysis-dev,machine-learning} |
mrmpi | 1 | {tools} |
ompl | 1 | {robotics-dev} |
- openctm | 1 | {physics-dev} |
openturns | 1 | {mathematics,statistics,engineering,meteorology-dev,mathematics-dev,meteorology} |
pynac | 1 | {mathematics-dev} |
+ python-aws-xray-sdk | 1 | {dataacquisition-dev} |
quadrule | 1 | {mathematics-dev} |
- ssm | 1 | {nanoscale-physics-dev} |
+ ssm | 1 | {nanoscale-physics} |
tamuanova | 1 | {statistics} |
tango | 1 | {dataacquisition-dev} |
tango | 1 | {dataacquisition} |
- vlfeat | 1 | {imageanalysis-dev} |
apertium-afr-nld | 0 | {linguistics} |
apertium-bel-rus | 0 | {linguistics} |
apertium-en-es | 0 | {linguistics} |
@@ -212,9 +209,9 @@ Last-Update: Sun, 05 Jun 2022 01:42:04 +0000
apertium-urd-hin | 0 | {linguistics} |
calculix-ccx-doc | 0 | {simulations,numericalcomputation,engineering} |
calculix-ccx-test | 0 | {simulations,engineering,numericalcomputation} |
- cernlib | 0 | {highenergy-physics,physics} |
cernlib | 0 | {highenergy-physics-dev} |
cernlib | 0 | {highenergy-physics} |
+ cernlib | 0 | {highenergy-physics,physics} |
ckon | 0 | {highenergy-physics-dev} |
clhep | 0 | {highenergy-physics-dev} |
coda | 0 | {meteorology-dev} |
@@ -229,12 +226,12 @@ Last-Update: Sun, 05 Jun 2022 01:42:04 +0000
libquantum | 0 | {numericalcomputation} |
librsl | 0 | {meteorology-dev} |
libsdsl | 0 | {dataacquisition-dev} |
- libvigraimpex | 0 | {imageanalysis-dev,machine-learning} |
libxsmm | 0 | {mathematics-dev} |
looptools | 0 | {highenergy-physics-dev} |
mclibs | 0 | {highenergy-physics} |
metis-edf | 0 | {engineering-dev} |
ompl | 0 | {robotics} |
+ openctm | 0 | {physics-dev} |
openigtlink | 0 | {robotics-dev} |
openturns | 0 | {engineering-dev,mathematics-dev,meteorology-dev} |
openturns | 0 | {engineering-dev,meteorology-dev,mathematics-dev} |
@@ -251,9 +248,11 @@ Last-Update: Sun, 05 Jun 2022 01:42:04 +0000
sagemath-database-polytopes | 0 | {mathematics} |
siscone | 0 | {highenergy-physics-dev} |
slicot | 0 | {robotics-dev,engineering-dev} |
+ ssm | 0 | {nanoscale-physics-dev} |
tachyon | 0 | {mathematics} |
triangle | 0 | {physics-dev} |
trilinos | 0 | {physics-dev,mathematics-dev,engineering-dev} |
visp-images | 0 | {robotics-dev} |
-(287 rows)
+ vlfeat | 0 | {imageanalysis-dev} |
+(286 rows)
=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/fe60b79e0a6ed084418398b8e66e90164fafe849
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