[med-svn] [Git][med-team/community/helper-scripts][master] automatic update

Andreas Tille (@tille) gitlab at salsa.debian.org
Mon Jun 13 14:42:29 BST 2022



Andreas Tille pushed to branch master at Debian Med / community / helper-scripts


Commits:
68e48210 by Andreas Tille at 2022-06-13T13:42:23+00:00
automatic update

- - - - -


3 changed files:

- debian-med-tests.txt
- debian-science-tests.txt
- outdated_med-packages.txt


Changes:

=====================================
debian-med-tests.txt
=====================================
@@ -1,21 +1,21 @@
-Last-Update: Mon, 13 Jun 2022 01:42:04 +0000
+Last-Update: Mon, 13 Jun 2022 13:42:04 +0000
 
  Source                        | Vote   |     Tasks                                           |                                 Tags                                 
 -------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------
- dcmtk                         |    168 | {covid-19,imaging}                                  | 
- orthanc                       |     94 | {imaging,covid-19,practice}                         | 
+ dcmtk                         |    171 | {covid-19,imaging}                                  | 
+ orthanc                       |     96 | {imaging,covid-19,practice}                         | 
  orthanc-wsi                   |     48 | {covid-19,imaging,his,laboratory,oncology,practice} | 
- node-shiny-server             |     41 | {covid-19,epi}                                      | 
- amide                         |     24 | {imaging}                                           | 
+ node-shiny-server             |     40 | {covid-19,epi}                                      | 
+ amide                         |     25 | {imaging}                                           | 
  dicomscope                    |     21 | {imaging}                                           | 
  dicom3tools                   |     19 | {imaging}                                           | 
- orthanc-webviewer             |     16 | {imaging}                                           | 
+ orthanc-webviewer             |     17 | {imaging}                                           | 
  gnumed-server                 |     14 | {practice,covid-19}                                 | 
  gdcm                          |     12 | {imaging-dev}                                       | 
  invesalius                    |     12 | {imaging}                                           | 
  orthanc-dicomweb              |     12 | {covid-19,imaging}                                  | 
- biojava-live                  |     10 | {bio-dev}                                           | 
- gdcm                          |     10 | {imaging,covid-19}                                  | 
+ gdcm                          |     11 | {imaging,covid-19}                                  | 
+ biojava-live                  |      9 | {bio-dev}                                           | 
  nipype                        |      8 | {imaging-dev,imaging}                               | 
  pixelmed                      |      8 | {imaging}                                           | 
  adun.app                      |      7 | {bio}                                               | 
@@ -25,23 +25,22 @@ Last-Update: Mon, 13 Jun 2022 01:42:04 +0000
  orthanc-postgresql            |      6 | {imaging}                                           | 
  treeview                      |      6 | {bio,bio-phylogeny}                                 | 
  bio-tradis                    |      5 | {bio,bio-dev}                                       | 
- canu                          |      5 | {bio}                                               | 
  elastix                       |      5 | {imaging}                                           | 
  jebl2                         |      5 | {bio-dev}                                           | 
  libminc                       |      5 | {imaging-dev}                                       | 
- nifti2dicom                   |      5 | {imaging}                                           | 
  orthanc-gdcm                  |      5 | {imaging}                                           | 
- orthanc-mysql                 |      5 | {imaging}                                           | 
  plastimatch                   |      5 | {imaging}                                           | 
  pymia                         |      5 | {imaging-dev}                                       | 
  salmon                        |      5 | {bio,covid-19}                                      | 
  staden                        |      5 | {bio}                                               | 
+ canu                          |      4 | {bio}                                               | 
  getdata                       |      4 | {bio}                                               | 
  ghmm                          |      4 | {bio}                                               | 
  king                          |      4 | {typesetting,imaging}                               | 
  lamarc                        |      4 | {bio}                                               | 
  libsbml                       |      4 | {bio-dev}                                           | 
  mia                           |      4 | {imaging}                                           | 
+ orthanc-mysql                 |      4 | {imaging}                                           | 
  oscar                         |      4 | {tools,practice,data}                               | 
  python-wdlparse               |      4 | {bio-dev}                                           | 
  rdp-alignment                 |      4 | {bio}                                               | 
@@ -80,7 +79,6 @@ Last-Update: Mon, 13 Jun 2022 01:42:04 +0000
  mhap                          |      3 | {bio,bio-ngs}                                       | 
  phyutility                    |      3 | {bio,cloud}                                         | 
  piler                         |      3 | {bio}                                               | 
- placnet                       |      3 | {bio}                                               | 
  pscan-chip                    |      3 | {bio}                                               | 
  rambo-k                       |      3 | {bio}                                               | 
  rdp-classifier                |      3 | {bio}                                               | 
@@ -108,6 +106,7 @@ Last-Update: Mon, 13 Jun 2022 01:42:04 +0000
  metaphlan2                    |      2 | {bio}                                               | 
  orthanc-python                |      2 | {covid-19}                                          | 
  papyrus                       |      2 | {imaging-dev}                                       | 
+ placnet                       |      2 | {bio}                                               | 
  plasmidseeker                 |      2 | {bio}                                               | 
  proalign                      |      2 | {bio,bio-phylogeny}                                 | 
  qcumber                       |      2 | {bio}                                               | 
@@ -137,7 +136,6 @@ Last-Update: Mon, 13 Jun 2022 01:42:04 +0000
  libhmsbeagle                  |      1 | {bio-dev}                                           | 
  libmems                       |      1 | {bio-dev}                                           | 
  libmuscle                     |      1 | {bio-dev}                                           | 
- libxdf                        |      1 | {imaging-dev}                                       | 
  microbegps                    |      1 | {bio}                                               | 
  mssstest                      |      1 | {tools}                                             | 
  opencfu                       |      1 | {laboratory}                                        | 
@@ -166,6 +164,7 @@ Last-Update: Mon, 13 Jun 2022 01:42:04 +0000
  libseqlib                     |      0 | {bio-dev}                                           | 
  libstatgen                    |      0 | {bio-dev}                                           | 
  libvistaio                    |      0 | {imaging-dev}                                       | 
+ libxdf                        |      0 | {imaging-dev}                                       | 
  megadepth                     |      0 | {bio}                                               | 
  metastudent-data              |      0 | {bio}                                               | 
  metastudent-data-2            |      0 | {bio}                                               | 
@@ -190,5 +189,5 @@ Last-Update: Mon, 13 Jun 2022 01:42:04 +0000
  megan-ce                      |     -1 | {bio}                                               | 
  rockhopper                    |     -1 | {bio}                                               | 
  sight                         |     -1 | {imaging-dev}                                       | 
-(218 rows)
+(217 rows)
 


=====================================
debian-science-tests.txt
=====================================
@@ -1,41 +1,40 @@
-Last-Update: Mon, 13 Jun 2022 01:42:04 +0000
+Last-Update: Mon, 13 Jun 2022 13:42:05 +0000
 
       Source                             | Vote   |                    Tasks                                                         |                                Tags                                
 -----------------------------------------+--------+----------------------------------------------------------------------------------+--------------------------------------------------------------------
- gts                                     |   2927 | {viewing}                                                                        | 
- sympy                                   |   1852 | {nanoscale-physics,physics}                                                      | 
- armadillo                               |    191 | {mathematics-dev}                                                                | 
- suitesparse                             |    142 | {mathematics-dev,numericalcomputation}                                           | 
- python-pyqtgraph                        |    137 | {viewing}                                                                        | 
- atlas                                   |     88 | {mathematics-dev}                                                                | 
+ gts                                     |   2922 | {viewing}                                                                        | 
+ sympy                                   |   1867 | {nanoscale-physics,physics}                                                      | 
+ armadillo                               |    192 | {mathematics-dev}                                                                | 
+ suitesparse                             |    144 | {mathematics-dev,numericalcomputation}                                           | 
+ python-pyqtgraph                        |    139 | {viewing}                                                                        | 
+ atlas                                   |     84 | {mathematics-dev}                                                                | 
  nltk                                    |     77 | {linguistics}                                                                    | 
- arpack                                  |     68 | {mathematics-dev}                                                                | 
- pyzo                                    |     51 | {numericalcomputation}                                                           | 
- cypari2                                 |     48 | {mathematics-dev}                                                                | 
- imview                                  |     46 | {viewing}                                                                        | 
- arduino-mk                              |     40 | {robotics}                                                                       | 
+ arpack                                  |     69 | {mathematics-dev}                                                                | 
+ pyzo                                    |     50 | {numericalcomputation}                                                           | 
+ cypari2                                 |     49 | {mathematics-dev}                                                                | 
+ imview                                  |     47 | {viewing}                                                                        | 
+ arduino-mk                              |     41 | {robotics}                                                                       | 
  fftw                                    |     36 | {physics-dev,mathematics-dev,meteorology-dev}                                    | 
- flintqs                                 |     36 | {mathematics}                                                                    | 
- rubiks                                  |     36 | {geometry,mathematics}                                                           | 
- eclib                                   |     35 | {mathematics}                                                                    | 
+ flintqs                                 |     35 | {mathematics}                                                                    | 
+ rubiks                                  |     35 | {geometry,mathematics}                                                           | 
+ eclib                                   |     33 | {mathematics}                                                                    | 
  sketch                                  |     26 | {typesetting}                                                                    | 
  feedgnuplot                             |     23 | {viewing}                                                                        | 
  cernlib                                 |     21 | {highenergy-physics}                                                             | 
  bossa                                   |     20 | {devices}                                                                        | 
- flann                                   |     19 | {mathematics-dev,engineering-dev}                                                | 
  fftw                                    |     18 | {meteorology-dev,mathematics-dev,physics-dev}                                    | 
  geg                                     |     18 | {viewing}                                                                        | 
+ libmatio                                |     18 | {mathematics-dev}                                                                | 
  neuron                                  |     18 | {simulations,highenergy-physics,neuroscience-modeling}                           | 
  vitables                                |     18 | {numericalcomputation}                                                           | 
  cernlib                                 |     16 | {highenergy-physics-dev}                                                         | 
+ flann                                   |     16 | {mathematics-dev,engineering-dev}                                                | 
  gts                                     |     16 | {viewing-dev}                                                                    | 
- libmatio                                |     16 | {mathematics-dev}                                                                | 
- opencascade                             |     15 | {simulations}                                                                    | 
+ opencascade                             |     16 | {simulations}                                                                    | 
  ppl                                     |     15 | {numericalcomputation}                                                           | 
  form                                    |     14 | {mathematics}                                                                    | 
  guidata                                 |     14 | {dataacquisition-dev}                                                            | 
  mathgl                                  |     14 | {viewing}                                                                        | 
- ntl                                     |     14 | {mathematics-dev}                                                                | 
  picosat                                 |     14 | {logic}                                                                          | 
  auto-07p                                |     13 | {mathematics}                                                                    | 
  coinor-symphony                         |     13 | {logic,numericalcomputation,mathematics}                                         | 
@@ -44,21 +43,22 @@ Last-Update: Mon, 13 Jun 2022 01:42:04 +0000
  gfsview                                 |     12 | {viewing}                                                                        | 
  guiqwt                                  |     12 | {viewing,numericalcomputation}                                                   | 
  neuron                                  |     12 | {highenergy-physics-dev}                                                         | 
+ ntl                                     |     12 | {mathematics-dev}                                                                | 
  opticalraytracer                        |     12 | {physics}                                                                        | 
  polylib                                 |     12 | {mathematics}                                                                    | 
+ debian-science                          |     11 | {mathematics,economics,machine-learning,physics,nanoscale-physics}               | 
  libm4ri                                 |     11 | {mathematics-dev}                                                                | 
  ros-ros-environment                     |     11 | {robotics-dev}                                                                   | 
  apophenia                               |     10 | {statistics}                                                                     | 
  cliquer                                 |     10 | {mathematics}                                                                    | 
- debian-science                          |     10 | {mathematics,economics,machine-learning,physics,nanoscale-physics}               | 
  dune-uggrid                             |     10 | {mathematics-dev}                                                                | 
  ipe-tools                               |     10 | {typesetting}                                                                    | 
- pcl                                     |     10 | {robotics-dev}                                                                   | 
  rheolef                                 |     10 | {mathematics}                                                                    | 
  syrthes                                 |     10 | {engineering}                                                                    | 
  debian-science                          |      9 | {economics,statistics,nanoscale-physics,physics}                                 | 
  libcgns                                 |      9 | {engineering}                                                                    | 
- lxi-tools                               |      9 | {dataacquisition,engineering}                                                    | 
+ pcl                                     |      9 | {robotics-dev}                                                                   | 
+ python-escript                          |      9 | {numericalcomputation,simulations,engineering}                                   | 
  scram                                   |      9 | {engineering}                                                                    | 
  tango                                   |      9 | {dataacquisition}                                                                | 
  uctodata                                |      9 | {linguistics}                                                                    | 
@@ -66,8 +66,7 @@ Last-Update: Mon, 13 Jun 2022 01:42:04 +0000
  debian-science                          |      8 | {neuroscience-cognitive,machine-learning}                                        | 
  jeuclid                                 |      8 | {typesetting,viewing}                                                            | 
  libm4rie                                |      8 | {mathematics-dev}                                                                | 
- lrcalc                                  |      8 | {mathematics}                                                                    | 
- python-escript                          |      8 | {numericalcomputation,simulations,engineering}                                   | 
+ lxi-tools                               |      8 | {dataacquisition,engineering}                                                    | 
  ros-rosconsole                          |      8 | {robotics-dev}                                                                   | 
  toulbar2                                |      8 | {logic,numericalcomputation,mathematics,physics}                                 | 
  ucto                                    |      8 | {linguistics}                                                                    | 
@@ -76,6 +75,7 @@ Last-Update: Mon, 13 Jun 2022 01:42:04 +0000
  libitpp                                 |      7 | {engineering-dev,mathematics-dev}                                                | 
  libmatheval                             |      7 | {mathematics}                                                                    | 
  libzn-poly                              |      7 | {mathematics-dev}                                                                | 
+ lrcalc                                  |      7 | {mathematics}                                                                    | 
  matlab-support                          |      7 | {numericalcomputation,mathematics}                                               | 
  opencascade                             |      7 | {simulations}                                                                    | 
  code-saturne                            |      6 | {mathematics-dev,engineering-dev}                                                | 
@@ -84,33 +84,34 @@ Last-Update: Mon, 13 Jun 2022 01:42:04 +0000
  dxsamples                               |      6 | {nanoscale-physics}                                                              | 
  eclib                                   |      6 | {mathematics-dev}                                                                | 
  libhomfly                               |      6 | {mathematics-dev}                                                                | 
- libvigraimpex                           |      6 | {imageanalysis-dev,machine-learning}                                             | 
+ muparser                                |      6 | {mathematics-dev}                                                                | 
  urdfdom-headers                         |      6 | {robotics-dev}                                                                   | 
+ astk                                    |      5 | {engineering}                                                                    | 
  cimg                                    |      5 | {imageanalysis-dev}                                                              | {x11::library}
  coinmp                                  |      5 | {mathematics-dev,logic,numericalcomputation}                                     | 
  dune-istl                               |      5 | {mathematics-dev}                                                                | 
  frog                                    |      5 | {linguistics}                                                                    | 
  gf2x                                    |      5 | {mathematics-dev}                                                                | 
+ hpcc                                    |      5 | {distributedcomputing,numericalcomputation}                                      | 
  ipe-tools                               |      5 | {typesetting}                                                                    | 
  irstlm                                  |      5 | {linguistics}                                                                    | 
+ libvigraimpex                           |      5 | {imageanalysis-dev,machine-learning}                                             | 
  lrcalc                                  |      5 | {mathematics-dev}                                                                | 
- muparser                                |      5 | {mathematics-dev}                                                                | 
  qd                                      |      5 | {mathematics-dev}                                                                | 
  sac2mseed                               |      5 | {geography}                                                                      | 
  tango                                   |      5 | {dataacquisition}                                                                | 
  teem                                    |      5 | {imageanalysis}                                                                  | 
  apertium-streamparser                   |      4 | {linguistics}                                                                    | 
- astk                                    |      4 | {engineering}                                                                    | 
  cbflib                                  |      4 | {nanoscale-physics}                                                              | 
  debian-science                          |      4 | {tools}                                                                          | 
  debian-science                          |      4 | {electrophysiology}                                                              | 
  dimbl                                   |      4 | {linguistics}                                                                    | 
  etsf-io                                 |      4 | {nanoscale-physics,physics}                                                      | 
  harp                                    |      4 | {meteorology}                                                                    | 
- hpcc                                    |      4 | {distributedcomputing,numericalcomputation}                                      | 
  libcgns                                 |      4 | {engineering-dev}                                                                | 
  libgetdata                              |      4 | {dataacquisition}                                                                | 
  libmatheval                             |      4 | {mathematics-dev}                                                                | 
+ morse-simulator                         |      4 | {robotics}                                                                       | 
  psurface                                |      4 | {numericalcomputation}                                                           | 
  ratpoints                               |      4 | {mathematics-dev}                                                                | 
  taurus                                  |      4 | {dataacquisition}                                                                | 
@@ -119,18 +120,15 @@ Last-Update: Mon, 13 Jun 2022 01:42:04 +0000
  cernlib                                 |      3 | {highenergy-physics}                                                             | 
  coda                                    |      3 | {meteorology-dev}                                                                | 
  code-saturne                            |      3 | {engineering-dev,mathematics-dev}                                                | 
+ debian-science                          |      3 | {economics}                                                                      | 
  debian-science                          |      3 | {psychophysics}                                                                  | 
  debian-science                          |      3 | {nanoscale-physics-dev}                                                          | 
- debian-science                          |      3 | {economics}                                                                      | 
  fastjet                                 |      3 | {highenergy-physics-dev}                                                         | 
- jhdf                                    |      3 | {engineering-dev}                                                                | 
- jhdf                                    |      3 | {engineering}                                                                    | 
  libgetdata                              |      3 | {dataacquisition-dev}                                                            | 
  libgtkdatabox                           |      3 | {engineering-dev,viewing-dev}                                                    | 
  looptools                               |      3 | {highenergy-physics}                                                             | 
  mbt                                     |      3 | {linguistics}                                                                    | 
  metis-edf                               |      3 | {engineering,numericalcomputation}                                               | 
- morse-simulator                         |      3 | {robotics}                                                                       | 
  neuron                                  |      3 | {highenergy-physics-dev}                                                         | 
  newmat                                  |      3 | {mathematics-dev}                                                                | 
  openmx                                  |      3 | {nanoscale-physics,physics}                                                      | 
@@ -140,15 +138,14 @@ Last-Update: Mon, 13 Jun 2022 01:42:04 +0000
  sardana                                 |      3 | {dataacquisition}                                                                | 
  x13as                                   |      3 | {economics}                                                                      | 
  apophenia                               |      2 | {statistics}                                                                     | 
- cbflib                                  |      2 | {nanoscale-physics-dev}                                                          | 
  cernlib                                 |      2 | {highenergy-physics}                                                             | 
  cld2                                    |      2 | {linguistics}                                                                    | 
  clhep                                   |      2 | {highenergy-physics-dev}                                                         | 
  coda                                    |      2 | {meteorology}                                                                    | 
  cqrlib                                  |      2 | {mathematics-dev}                                                                | 
  cvector                                 |      2 | {mathematics-dev}                                                                | 
- debian-science                          |      2 | {neuroscience-cognitive}                                                         | 
  debian-science                          |      2 | {physics}                                                                        | 
+ debian-science                          |      2 | {neuroscience-cognitive}                                                         | 
  dune-localfunctions                     |      2 | {mathematics-dev}                                                                | 
  gemmlowp                                |      2 | {mathematics-dev}                                                                | 
  itsol                                   |      2 | {mathematics-dev}                                                                | 
@@ -163,11 +160,14 @@ Last-Update: Mon, 13 Jun 2022 01:42:04 +0000
  tango                                   |      2 | {dataacquisition-dev}                                                            | 
  apriltag                                |      1 | {robotics-dev}                                                                   | 
  asl                                     |      1 | {physics-dev}                                                                    | 
+ cbflib                                  |      1 | {nanoscale-physics-dev}                                                          | 
  cernlib                                 |      1 | {highenergy-physics}                                                             | 
  clipper                                 |      1 | {nanoscale-physics-dev}                                                          | 
  coda                                    |      1 | {meteorology-dev}                                                                | 
  collada-dom                             |      1 | {viewing-dev}                                                                    | 
  frogdata                                |      1 | {linguistics}                                                                    | 
+ jhdf                                    |      1 | {engineering-dev}                                                                | 
+ jhdf                                    |      1 | {engineering}                                                                    | 
  libccp4                                 |      1 | {nanoscale-physics-dev}                                                          | 
  libdogleg                               |      1 | {mathematics-dev}                                                                | 
  liblxi                                  |      1 | {engineering-dev,dataacquisition-dev}                                            | 
@@ -183,8 +183,8 @@ Last-Update: Mon, 13 Jun 2022 01:42:04 +0000
  quadrule                                |      1 | {mathematics-dev}                                                                | 
  ssm                                     |      1 | {nanoscale-physics}                                                              | 
  tamuanova                               |      1 | {statistics}                                                                     | 
- tango                                   |      1 | {dataacquisition}                                                                | 
  tango                                   |      1 | {dataacquisition-dev}                                                            | 
+ tango                                   |      1 | {dataacquisition}                                                                | 
  apertium-afr-nld                        |      0 | {linguistics}                                                                    | 
  apertium-bel-rus                        |      0 | {linguistics}                                                                    | 
  apertium-en-es                          |      0 | {linguistics}                                                                    | 
@@ -205,9 +205,9 @@ Last-Update: Mon, 13 Jun 2022 01:42:04 +0000
  apertium-urd-hin                        |      0 | {linguistics}                                                                    | 
  calculix-ccx-doc                        |      0 | {simulations,numericalcomputation,engineering}                                   | 
  calculix-ccx-test                       |      0 | {simulations,numericalcomputation,engineering}                                   | 
+ cernlib                                 |      0 | {highenergy-physics-dev}                                                         | 
  cernlib                                 |      0 | {highenergy-physics}                                                             | 
  cernlib                                 |      0 | {highenergy-physics,physics}                                                     | 
- cernlib                                 |      0 | {highenergy-physics-dev}                                                         | 
  ckon                                    |      0 | {highenergy-physics-dev}                                                         | 
  clhep                                   |      0 | {highenergy-physics-dev}                                                         | 
  coda                                    |      0 | {meteorology-dev}                                                                | 
@@ -229,8 +229,8 @@ Last-Update: Mon, 13 Jun 2022 01:42:04 +0000
  metis-edf                               |      0 | {engineering-dev}                                                                | 
  ompl                                    |      0 | {robotics}                                                                       | 
  openctm                                 |      0 | {physics-dev}                                                                    | 
- openturns                               |      0 | {engineering-dev,mathematics-dev,meteorology-dev}                                | 
  openturns                               |      0 | {engineering-dev,meteorology-dev,mathematics-dev}                                | 
+ openturns                               |      0 | {engineering-dev,mathematics-dev,meteorology-dev}                                | 
  psurface                                |      0 | {numericalcomputation}                                                           | 
  python-escript                          |      0 | {engineering,simulations,numericalcomputation}                                   | 
  qrupdate                                |      0 | {mathematics-dev}                                                                | 


=====================================
outdated_med-packages.txt
=====================================
The diff for this file was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/community/helper-scripts/-/commit/68e48210986b92872cdada66643c682e6c3c490b

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