[med-svn] [Git][med-team/augustus][master] 4 commits: Remove RUNPATH from binaries

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / augustus


Commits:
23c074af by Andreas Tille at 2022-10-10T08:26:11+02:00
Remove RUNPATH from binaries

- - - - -
434b46b7 by Andreas Tille at 2022-10-10T08:27:10+02:00
Do not mention not included files in d/copryight

- - - - -
3d1fe50b by Andreas Tille at 2022-10-10T09:16:37+02:00
lintian-overrides for false positives

- - - - -
6b92a7d1 by Andreas Tille at 2022-10-10T09:41:19+02:00
Upload to unstable

- - - - -


6 changed files:

- debian/changelog
- debian/control
- debian/copyright
- + debian/lintian-overrides.augustus-data
- debian/rules
- + debian/source/lintian-overrides


Changes:

=====================================
debian/changelog
=====================================
@@ -1,11 +1,13 @@
-augustus (3.5.0+dfsg-1) UNRELEASED; urgency=medium
+augustus (3.5.0+dfsg-1) unstable; urgency=medium
 
   * Team upload.
   * Fix watch file
   * Cleanup d/copyright from unused Files-Excluded
   * Standards-Version: 4.6.1 (routine-update)
+  * Remove RUNPATH from binaries
+  * lintian-overrides for false positives
 
- -- Andreas Tille <tille at debian.org>  Fri, 30 Sep 2022 12:37:43 +0200
+ -- Andreas Tille <tille at debian.org>  Mon, 10 Oct 2022 09:16:46 +0200
 
 augustus (3.4.0+dfsg2-3) unstable; urgency=medium
 


=====================================
debian/control
=====================================
@@ -18,7 +18,8 @@ Build-Depends: debhelper-compat (= 13),
                libmysql++-dev,
                asciidoctor,
                python3,
-               samtools
+               samtools,
+               chrpath
 Standards-Version: 4.6.1
 Rules-Requires-Root: no
 Vcs-Browser: https://salsa.debian.org/med-team/augustus


=====================================
debian/copyright
=====================================
@@ -18,11 +18,6 @@ Files: scripts/webserver-results.tail
 Copyright: © 2011 University of Greifswald
 License: Artistic
 
-Files: auxprogs/filterBam/src/bamtools/*.h
-Copyright: © 2009-2010 Derek Barnett, Erik Garrison, Gabor Marth,
-                       Michael Stromberg
-License: MIT
-
 Files: debian/*
 Copyright: © 2016 Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 License: GPL-3+


=====================================
debian/lintian-overrides.augustus-data
=====================================
@@ -0,0 +1,2 @@
+# These text data are not documentation
+augustus-data: package-contains-documentation-outside-usr-share-doc


=====================================
debian/rules
=====================================
@@ -89,5 +89,10 @@ override_dh_auto_install:
 	find             debian/augustus-data/usr/share/augustus \
 	  -type f -exec chmod -x {} \;
 
+override_dh_install:
+	chrpath -d debian/*/usr/bin/bam2hints
+	chrpath -d debian/*/usr/bin/filterBam
+	dh_install
+
 override_dh_compress:
 	dh_compress -Xtutorial


=====================================
debian/source/lintian-overrides
=====================================
@@ -0,0 +1,2 @@
+# See lintian bug #1017966
+augustus source: source-is-missing



View it on GitLab: https://salsa.debian.org/med-team/augustus/-/compare/7f62a4abe5129e2a7cb6876608ff60dc5b46caaa...6b92a7d1ee64d94c5cc8b4182e79da5f314fb00e

-- 
View it on GitLab: https://salsa.debian.org/med-team/augustus/-/compare/7f62a4abe5129e2a7cb6876608ff60dc5b46caaa...6b92a7d1ee64d94c5cc8b4182e79da5f314fb00e
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