[med-svn] [Git][med-team/minimac4][master] Make sure lzma can be linked

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / minimac4


Commits:
018a2b29 by Andreas Tille at 2022-10-27T13:54:13+02:00
Make sure lzma can be linked

- - - - -


3 changed files:

- debian/control
- + debian/patches/lzma.patch
- debian/patches/series


Changes:

=====================================
debian/control
=====================================
@@ -8,10 +8,10 @@ Build-Depends: debhelper-compat (= 13),
                cmake,
                zlib1g-dev,
                libstatgen-dev,
-               libomp-dev,
                libshrinkwrap-dev,
                libsavvy-dev,
-               libomp-jonathonl-dev,
+               libomp-jonathonl-dev (>= 0.0+git20211216.5228495),
+               liblzma-dev,
                libzstd-dev
 Standards-Version: 4.6.1
 Vcs-Browser: https://salsa.debian.org/med-team/minimac4


=====================================
debian/patches/lzma.patch
=====================================
@@ -0,0 +1,15 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Thu, 22 Sep 2022 09:28:59 +0200
+Description: Make sure lzma can be linked
+
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -30,7 +30,7 @@ add_executable(minimac4
+         src/unique_haplotype.cpp src/unique_haplotype.hpp
+         src/main.cpp)
+ 
+-target_link_libraries(minimac4 savvy ${OMPP_LIBRARY} Threads::Threads)
++target_link_libraries(minimac4 savvy ${OMPP_LIBRARY} lzma Threads::Threads)
+ 
+ install(TARGETS minimac4 RUNTIME DESTINATION bin)
+ 


=====================================
debian/patches/series
=====================================
@@ -1 +1,2 @@
 Use_shared_zlib.patch
+lzma.patch



View it on GitLab: https://salsa.debian.org/med-team/minimac4/-/commit/018a2b29b48cbe8c37ed7e1ce1f311e7e0c02f93

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View it on GitLab: https://salsa.debian.org/med-team/minimac4/-/commit/018a2b29b48cbe8c37ed7e1ce1f311e7e0c02f93
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