[med-svn] [Git][med-team/augustus][upstream] New upstream version 3.5.0+dfsg

[Andreas Tille (@tille)]

Andreas Tille pushed to branch upstream at Debian Med / augustus


Commits:
aa10faa8 by Andreas Tille at 2022-09-30T12:46:32+02:00
New upstream version 3.5.0+dfsg
- - - - -


27 changed files:

- + .github/workflows/build_and_test.yml
- − .github/workflows/examples_test.yml
- .gitignore
- − .travis.yml
- Dockerfile
- Makefile
- README.md
- + Singularity.def
- auxprogs/Makefile
- auxprogs/aln2wig/Makefile
- auxprogs/aln2wig/aln2wig.c
- auxprogs/bam2hints/Makefile
- auxprogs/bam2hints/README
- auxprogs/bam2hints/bam2hints.cc
- auxprogs/bam2wig/Makefile
- auxprogs/bam2wig/README.md
- auxprogs/compileSpliceCands/Makefile
- auxprogs/compileSpliceCands/list.c
- auxprogs/filterBam/Makefile
- − auxprogs/filterBam/README
- + auxprogs/filterBam/README.md
- + auxprogs/filterBam/src/BamSeqLibAccess.cc
- + auxprogs/filterBam/src/BamToolsAccess.cc
- auxprogs/filterBam/src/Makefile
- − auxprogs/filterBam/src/bamtools/LICENSE
- − auxprogs/filterBam/src/bamtools/bamtools_sort.h
- − auxprogs/filterBam/src/bamtools/bamtools_tool.h


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/augustus/-/commit/aa10faa82d0d19542c6393f0e342c270debdc4b4

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View it on GitLab: https://salsa.debian.org/med-team/augustus/-/commit/aa10faa82d0d19542c6393f0e342c270debdc4b4
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