[med-svn] [Git][med-team/hyphy][master] 4 commits: routine-update: New upstream version

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / hyphy


Commits:
e076762d by Andreas Tille at 2023-02-05T20:48:20+01:00
routine-update: New upstream version

- - - - -
5a935bd6 by Andreas Tille at 2023-02-05T20:48:21+01:00
New upstream version 2.5.47+dfsg
- - - - -
a02e8b2e by Andreas Tille at 2023-02-05T20:48:30+01:00
Update upstream source from tag 'upstream/2.5.47+dfsg'

Update to upstream version '2.5.47+dfsg'
with Debian dir 5d9883d97b8897011c2ddd6e2e6e3981f2056e23
- - - - -
25524073 by Andreas Tille at 2023-02-05T20:53:15+01:00
routine-update: Ready to upload to unstable

- - - - -


3 changed files:

- − .github/workflows/release.yml
- debian/changelog
- src/core/matrix.cpp


Changes:

=====================================
.github/workflows/release.yml deleted
=====================================
@@ -1,23 +0,0 @@
-# This is a basic workflow to help you get started with Actions
-
-name: RELEASE
-
-# Controls when the action will run. Triggers the workflow on push or pull request 
-# events but only for the master branch
-on:
-  release:
-    types: [published]
-
-# A workflow run is made up of one or more jobs that can run sequentially or in parallel
-jobs:
-  # This workflow contains a single job called "build"
-  build:
-    # The type of runner that the job will run on
-    runs-on: ubuntu-latest
-
-    # Steps represent a sequence of tasks that will be executed as part of the job
-    steps:
-    # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
-    - uses: actions/checkout at v2
-    run: |
-      curl -XPOST -u "${{ secrets.PAT_USERNAME}}:${{secrets.PAT_TOKEN}}" -H "Accept: application/vnd.github.everest-preview+json"  -H "Content-Type: application/json" https://api.github.com/repos/veg/datamonkey-js-server/dispatches --data '{"event_type": "hyphy_release"}'


=====================================
debian/changelog
=====================================
@@ -1,3 +1,9 @@
+hyphy (2.5.47+dfsg-1) unstable; urgency=medium
+
+  * New upstream version
+
+ -- Andreas Tille <tille at debian.org>  Sun, 05 Feb 2023 20:48:53 +0100
+
 hyphy (2.5.46+dfsg-1) unstable; urgency=medium
 
   * New upstream version


=====================================
src/core/matrix.cpp
=====================================
@@ -2755,10 +2755,10 @@ HBLObjectRef   _Matrix::Evaluate (bool replace)
                     long k = result.theIndex[nz];
                     if (k != -1) {
                         long ri = k / vDim;
-                        if (diag_skip[k] == false) {
+                        if (diag_skip[ri] == false) {
                             long ci = k - ri * vDim;
                             if (ci != ri) {
-                                diag_storage[ri] -= result.theData[k];
+                                diag_storage[ri] -= result.theData[nz];
                             }
                         }
                     }



View it on GitLab: https://salsa.debian.org/med-team/hyphy/-/compare/c82e311f9dd23f1c2973e3844b59093a7815879c...25524073cecb9741138300f860cb0f0499cd449a

-- 
View it on GitLab: https://salsa.debian.org/med-team/hyphy/-/compare/c82e311f9dd23f1c2973e3844b59093a7815879c...25524073cecb9741138300f860cb0f0499cd449a
You're receiving this email because of your account on salsa.debian.org.


-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://alioth-lists.debian.net/pipermail/debian-med-commit/attachments/20230205/e717ddda/attachment-0001.htm>