[med-svn] [Git][med-team/trinityrnaseq][master] 5 commits: routine-update: New upstream version

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / trinityrnaseq


Commits:
db7490b7 by Andreas Tille at 2023-01-21T12:04:50+01:00
routine-update: New upstream version

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8f062390 by Andreas Tille at 2023-01-21T12:04:55+01:00
New upstream version 2.15.0+dfsg
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a0b93e57 by Andreas Tille at 2023-01-21T12:07:35+01:00
Update upstream source from tag 'upstream/2.15.0+dfsg'

Update to upstream version '2.15.0+dfsg'
with Debian dir a358fb171c02bdafc85e07e0bf202b62578e84da
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832df6ad by Andreas Tille at 2023-01-21T12:07:35+01:00
routine-update: Standards-Version: 4.6.2

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62612843 by Andreas Tille at 2023-01-21T12:15:30+01:00
Refresh patches

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30 changed files:

- Analysis/SuperTranscripts/DTU/dexseq_wrapper.pl
- Changelog.txt
- Chrysalis/analysis/ReadsToTranscripts.cc
- Docker/Dockerfile
- Docker/VERSION.txt
- PerlLib/SAM_entry.pm
- Trinity
- debian/changelog
- debian/control
- debian/patches/adjust-trimmomatic-adapters-path
- debian/patches/disable-version-check
- debian/patches/fix_system_paths
- + sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_using_Grid_uger.HpcGridRunner.singularity_intra.sh
- + sample_data/test_Trinity_Assembly/misc_run_tests/__test_runMe_singularity.intra.sh
- sample_data/test_Trinity_Assembly/runMe.sh
- trinity-plugins/ParaFly/Makefile
- trinity-plugins/ParaFly/config.log
- trinity-plugins/ParaFly/config.status
- trinity-plugins/ParaFly/src/Makefile
- trinity-plugins/bamsifter/build_htslib.sh
- trinity-plugins/bamsifter/sift_bam_max_cov.cpp
- trinity_ext_sample_data/test_Assembly_DiffReadFormattings/Makefile
- trinity_ext_sample_data/test_Assembly_DiffReadFormattings/ensure_min_asm.pl
- trinity_ext_sample_data/test_GenomeGuidedTrinity/run_Schizo_TrinityGG_jaccard_clip.sh
- trinity_ext_sample_data/test_GenomeGuidedTrinity/run_chr17_GG_wLongreads.sh
- trinity_ext_sample_data/test_GenomeGuidedTrinity/run_genome-guided_Trinity_use_existing_bam.sh
- trinity_ext_sample_data/test_GenomeGuidedTrinity/run_small_GG_mutliScaff_test.sh
- trinity_ext_sample_data/test_full_edgeR_pipeline/Makefile
- util/insilico_read_normalization.pl
- + util/misc/SAM_to_gff3.minimap2.pl


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/-/compare/bfa66f4a3c87bc9a427d2d29658ac0175ce146ef...62612843604d3e647193b85efa64453a16fd79b3

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View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/-/compare/bfa66f4a3c87bc9a427d2d29658ac0175ce146ef...62612843604d3e647193b85efa64453a16fd79b3
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