[med-svn] [Git][med-team/trinityrnaseq][upstream] New upstream version 2.15.0+dfsg

[Andreas Tille (@tille)]

Andreas Tille pushed to branch upstream at Debian Med / trinityrnaseq


Commits:
8f062390 by Andreas Tille at 2023-01-21T12:04:55+01:00
New upstream version 2.15.0+dfsg
- - - - -


30 changed files:

- Analysis/SuperTranscripts/DTU/dexseq_wrapper.pl
- Changelog.txt
- Chrysalis/analysis/ReadsToTranscripts.cc
- Docker/Dockerfile
- Docker/VERSION.txt
- PerlLib/SAM_entry.pm
- Trinity
- + sample_data/test_Trinity_Assembly/misc_run_tests/__runMe_using_Grid_uger.HpcGridRunner.singularity_intra.sh
- + sample_data/test_Trinity_Assembly/misc_run_tests/__test_runMe_singularity.intra.sh
- sample_data/test_Trinity_Assembly/runMe.sh
- trinity-plugins/ParaFly/Makefile
- trinity-plugins/ParaFly/config.log
- trinity-plugins/ParaFly/config.status
- trinity-plugins/ParaFly/src/Makefile
- trinity-plugins/bamsifter/build_htslib.sh
- trinity-plugins/bamsifter/sift_bam_max_cov.cpp
- trinity_ext_sample_data/test_Assembly_DiffReadFormattings/Makefile
- trinity_ext_sample_data/test_Assembly_DiffReadFormattings/ensure_min_asm.pl
- trinity_ext_sample_data/test_GenomeGuidedTrinity/run_Schizo_TrinityGG_jaccard_clip.sh
- trinity_ext_sample_data/test_GenomeGuidedTrinity/run_chr17_GG_wLongreads.sh
- trinity_ext_sample_data/test_GenomeGuidedTrinity/run_genome-guided_Trinity_use_existing_bam.sh
- trinity_ext_sample_data/test_GenomeGuidedTrinity/run_small_GG_mutliScaff_test.sh
- trinity_ext_sample_data/test_full_edgeR_pipeline/Makefile
- util/insilico_read_normalization.pl
- + util/misc/SAM_to_gff3.minimap2.pl
- + util/misc/STAR_align_log_parser.py
- util/misc/TPM_weighted_gene_length.py
- + util/misc/fasta_to_tab.pl
- util/misc/process_minimap2_alignments.pl
- + util/misc/rename_fasta_accessions_using_Trinotate_annot_mappings.pl


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/-/commit/8f062390ba66b192c30c5968d1cbbbe34d5d3adb

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View it on GitLab: https://salsa.debian.org/med-team/trinityrnaseq/-/commit/8f062390ba66b192c30c5968d1cbbbe34d5d3adb
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