[med-svn] [Git][med-team/bowtie2][debian/experimental] 38 commits: Update metadata - indent plus ref to guix

Sun Jan 22 17:23:21 GMT 2023

Michael R. Crusoe pushed to branch debian/experimental at Debian Med / bowtie2

Commits:
1dd8cdbe by Steffen Möller at 2021-03-06T22:59:42+00:00
Update metadata - indent plus ref to guix
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671a62e0 by Michael R. Crusoe at 2021-09-13T18:38:05+02:00
prep for update

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b49c11be by Michael R. Crusoe at 2021-09-13T18:38:17+02:00
routine-update: Fix watchfile to detect new versions on github

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ab957f55 by Michael R. Crusoe at 2021-09-13T18:38:19+02:00
routine-update: New upstream version

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b1b4187f by Michael R. Crusoe at 2021-09-13T18:38:20+02:00
New upstream version 2.4.4
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b6f6e46b by Michael R. Crusoe at 2021-09-13T18:38:38+02:00
Update upstream source from tag 'upstream/2.4.4'

Update to upstream version '2.4.4'
with Debian dir 1f0c94300dbd49df3da4e08187c0ed18a34a6693
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e042b6d5 by Michael R. Crusoe at 2021-09-13T18:38:39+02:00
routine-update: Standards-Version: 4.6.0

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137ce265 by Michael R. Crusoe at 2021-09-13T18:46:32+02:00
Refresh patches

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1564432f by Michael R. Crusoe at 2021-09-13T19:00:37+02:00
no more tinythread, it seems

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a26af0e2 by Michael R. Crusoe at 2021-09-13T19:00:37+02:00
routine-update: Ready to upload to unstable

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98442b81 by Andreas Tille at 2022-02-17T16:38:51+01:00
routine-update: New upstream version

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cf277464 by Andreas Tille at 2022-02-17T16:38:51+01:00
New upstream version 2.4.5
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bada3ffa by Andreas Tille at 2022-02-17T16:39:15+01:00
Update upstream source from tag 'upstream/2.4.5'

Update to upstream version '2.4.5'
with Debian dir b558c595fb4d1a9d3fe70e3ae0aa5b3a3eede81c
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59a0758a by Andreas Tille at 2022-02-17T16:39:23+01:00
Drop transition for old debug package migration.

Changes-By: lintian-brush

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7b3da54f by Andreas Tille at 2022-02-17T16:46:31+01:00
Update patches

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183889d7 by Andreas Tille at 2022-02-17T16:58:10+01:00
Upload to unstable

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d7a8895a by Andreas Tille at 2022-02-17T19:23:15+01:00
No salsa-ci for i386

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18286445 by Andreas Tille at 2022-02-17T19:38:06+01:00
Use proper download file name

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ae6f1ec6 by Andreas Tille at 2022-11-04T19:56:13+01:00
New upstream version 2.5.0
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9dde5064 by Andreas Tille at 2022-11-04T19:56:13+01:00
routine-update: New upstream version

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9809cd92 by Andreas Tille at 2022-11-04T19:56:27+01:00
Update upstream source from tag 'upstream/2.5.0'

Update to upstream version '2.5.0'
with Debian dir d43192418f3164832e48405c9da89906f697677b
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72ee06d4 by Andreas Tille at 2022-11-04T19:56:27+01:00
routine-update: Standards-Version: 4.6.1

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e4f5b102 by Andreas Tille at 2022-11-04T19:56:33+01:00
Use secure URI in Homepage field.

Changes-By: lintian-brush
Fixes: lintian: homepage-field-uses-insecure-uri
See-also: https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html

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c9b4d7a6 by Andreas Tille at 2022-11-04T19:56:38+01:00
Set upstream metadata fields: Bug-Database.

Changes-By: lintian-brush

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f90758ae by Andreas Tille at 2022-11-04T20:15:46+01:00
Update patches

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0bc4f21f by Étienne Mollier at 2022-11-05T17:17:48+01:00
simde patch: adjust to introduction of AVX2 support.

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31ccf03a by Étienne Mollier at 2022-11-05T17:18:49+01:00
update changelog.

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7d3ae2c3 by Étienne Mollier at 2022-11-05T20:23:22+01:00
d/control: add pandoc to build doc/manual.html.

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fe056d86 by Étienne Mollier at 2022-11-05T20:23:32+01:00
d/rules: trigger refresh of the doc/manual.html.

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949ed98a by Étienne Mollier at 2022-11-05T20:23:56+01:00
d/s/lintian-overrides: override missing source on doc/manual.html.

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0260dd82 by Étienne Mollier at 2022-11-05T22:49:02+01:00
ready to upload to unstable.

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dfaf2b6f by Andreas Tille at 2022-12-12T15:01:31+01:00
Package does not build on s390x any more

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02575984 by Andreas Tille at 2022-12-12T15:16:23+01:00
routine-update: Ready to upload to unstable

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414d323e by Andreas Tille at 2023-01-17T16:13:18+01:00
Merge all autopkgtest scripts into run-unit-test as usual in Debian Med packages

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b92025c9 by Andreas Tille at 2023-01-17T16:14:58+01:00
Prevent autopkgtest on s390x since the package is no built here

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77d2101a by Andreas Tille at 2023-01-17T16:15:12+01:00
routine-update: Standards-Version: 4.6.2

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43afb83b by Andreas Tille at 2023-01-17T16:48:39+01:00
Fix autopkgtest and upload to unstable

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4c9aec4d by Michael R. Crusoe at 2023-01-22T18:21:12+01:00
Experimental rebuild with SIMDe 0.7.3~0git20230118123246.d1e75cd

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15 changed files:

- + .github/workflows/random-tests.yml
- + .github/workflows/simple-tests.yml
- .gitmodules
- .travis.yml
- BOWTIE2_VERSION
- CMakeLists.txt
- MANUAL
- MANUAL.markdown
- Makefile
- NEWS
- README.md
- aligner_bt.cpp
- aligner_cache.cpp
- aligner_cache.h
- aligner_seed.cpp

The diff was not included because it is too large.

View it on GitLab: https://salsa.debian.org/med-team/bowtie2/-/compare/86ca8488922f46052f07fb6b591e6bcd7e679e95...4c9aec4d460c6d38866e2bba177100c41557885a

-- 
View it on GitLab: https://salsa.debian.org/med-team/bowtie2/-/compare/86ca8488922f46052f07fb6b591e6bcd7e679e95...4c9aec4d460c6d38866e2bba177100c41557885a
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