[med-svn] [Git][med-team/hyphy][master] 10 commits: New upstream version 2.5.50+dfsg

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / hyphy


Commits:
897900f6 by Nilesh Patra at 2023-05-09T22:19:19+05:30
New upstream version 2.5.50+dfsg
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1982811a by Étienne Mollier at 2023-07-09T13:15:29+02:00
routine-update: New upstream version

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36f9a9c3 by Étienne Mollier at 2023-07-09T13:15:47+02:00
New upstream version 2.5.51+dfsg
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920f55d3 by Étienne Mollier at 2023-07-09T13:15:55+02:00
Update upstream source from tag 'upstream/2.5.51+dfsg'

Update to upstream version '2.5.51+dfsg'
with Debian dir d2ac2ffb41008671ef3e51a26c074d25ac0d8d47
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b9efc156 by Étienne Mollier at 2023-07-09T13:16:19+02:00
Remove constraints unnecessary since bullseye (oldstable)

* Remove 3 maintscript entries from 3 files.

Changes-By: deb-scrub-obsolete
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4d6a6bfe by Étienne Mollier at 2023-07-09T13:23:45+02:00
rm_arch_specific_flags.patch: refresh.

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68cc3c76 by Étienne Mollier at 2023-07-09T13:23:54+02:00
d/control: build now depends on swig.

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7a939b2f by Étienne Mollier at 2023-07-09T13:40:32+02:00
d/control: build now depends on python3 sdk.

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0445805f by Étienne Mollier at 2023-07-09T14:28:55+02:00
fix-configure-failure.patch: add: fix a cmake error.

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e3ed17ca by Étienne Mollier at 2023-07-09T14:34:51+02:00
ready to upload to unstable.

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30 changed files:

- + .github/workflows/benchmark.yml
- + .github/workflows/codeql.yml
- + .github/workflows/coverage.yml
- + .github/workflows/stale.yml
- + .travis.yml
- CMakeLists.txt
- README.md
- debian/changelog
- debian/control
- − debian/hyphy-common.maintscript
- − debian/hyphy-mpi.maintscript
- − debian/hyphy-pt.maintscript
- + debian/patches/fix-configure-failure.patch
- debian/patches/rm_arch_specific_flags.patch
- debian/patches/series
- res/TemplateBatchFiles/SelectionAnalyses/BUSTED.bf
- res/TemplateBatchFiles/SelectionAnalyses/PRIME.bf
- res/TemplateBatchFiles/SelectionAnalyses/RELAX.bf
- res/TemplateBatchFiles/SelectionAnalyses/modules/io_functions.ibf
- res/TemplateBatchFiles/TemplateModels/defineGamma.mdl
- res/TemplateBatchFiles/libv3/models/codon/MG_REV_PROPERTIES.bf
- res/TemplateBatchFiles/libv3/tasks/estimators.bf
- src/core/batchlan.cpp
- src/core/batchlan2.cpp
- src/core/batchlanruntime.cpp
- src/core/dataset.cpp
- src/core/fisher_exact.cpp
- src/core/formula.cpp
- src/core/fstring.cpp
- src/core/global_things.cpp


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/hyphy/-/compare/e188fe37a66ce1e931acb7a788da11bbade65570...e3ed17ca64527d4d123568c9dc66156507e26adf

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View it on GitLab: https://salsa.debian.org/med-team/hyphy/-/compare/e188fe37a66ce1e931acb7a788da11bbade65570...e3ed17ca64527d4d123568c9dc66156507e26adf
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