[med-svn] [Git][med-team/unifrac-tools][master] 2 commits: gcc-13.patch: new: fix build failures with gcc-13

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / unifrac-tools


Commits:
a14968b4 by Étienne Mollier at 2023-07-23T11:42:18+02:00
gcc-13.patch: new: fix build failures with gcc-13

Closes: #1037879

- - - - -
b12b1399 by Étienne Mollier at 2023-07-23T11:43:52+02:00
ready to upload to unstable.

- - - - -


3 changed files:

- debian/changelog
- + debian/patches/gcc-13.patch
- debian/patches/series


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,9 @@
+unifrac-tools (1.3.2-2) unstable; urgency=medium
+
+  * gcc-13.patch: new: fix build failures with gcc-13 (Closes: #1037879)
+
+ -- Étienne Mollier <emollier at debian.org>  Sun, 23 Jul 2023 11:43:01 +0200
+
 unifrac-tools (1.3.2-1) unstable; urgency=medium
 
   * New upstream version


=====================================
debian/patches/gcc-13.patch
=====================================
@@ -0,0 +1,37 @@
+Description: fix build failure with gcc 13
+Author: Étienne Mollier <emollier at debian.org>
+Bug-Debian: https://bugs.debian.org/1037879
+Forwarded: https://github.com/biocore/unifrac-binaries/pull/45
+Last-Update: 2023-07-23
+---
+This patch header follows DEP-3: http://dep.debian.net/deps/dep3/
+--- unifrac-tools.orig/src/tree.hpp
++++ unifrac-tools/src/tree.hpp
+@@ -10,6 +10,7 @@
+ #ifndef __UNIFRAC_TREE_H
+ #define __UNIFRAC_TREE_H 1
+ 
++#include <cstdint>
+ #include <string>
+ #include <sstream>
+ #include <iostream>
+--- unifrac-tools.orig/src/biom_inmem.hpp
++++ unifrac-tools/src/biom_inmem.hpp
+@@ -11,6 +11,7 @@
+ #ifndef _UNIFRAC_BIOM_INMEM_H
+ #define _UNIFRAC_BIOM_INMEM_H
+ 
++#include <cstdint>
+ #include <vector>
+ #include <unordered_map>
+ 
+--- unifrac-tools.orig/src/tsv.hpp
++++ unifrac-tools/src/tsv.hpp
+@@ -11,6 +11,7 @@
+ #ifndef _UNIFRAC_TSV_H
+ #define _UNIFRAC_TSV_H
+ 
++#include <cstdint>
+ #include <vector>
+ #include <map>
+ #include <string>


=====================================
debian/patches/series
=====================================
@@ -4,3 +4,4 @@ soname.patch
 baseline.patch
 enable_linking_to_shared_hdf5_lib.patch
 enable-debug-flag.patch
+gcc-13.patch



View it on GitLab: https://salsa.debian.org/med-team/unifrac-tools/-/compare/1ccd145611df66497bf0273ae24d01604a7fdc8c...b12b139914a4c53cddd970f75335f59367e9dbbc

-- 
View it on GitLab: https://salsa.debian.org/med-team/unifrac-tools/-/compare/1ccd145611df66497bf0273ae24d01604a7fdc8c...b12b139914a4c53cddd970f75335f59367e9dbbc
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