[med-svn] [Git][med-team/lamassemble][master] 9 commits: New upstream version 1.6.1

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch master at Debian Med / lamassemble


Commits:
653b7c8f by Étienne Mollier at 2023-11-08T09:57:16+01:00
New upstream version 1.6.1
- - - - -
6a0199c6 by Étienne Mollier at 2023-11-08T09:57:16+01:00
routine-update: New upstream version

- - - - -
51f3ee8f by Étienne Mollier at 2023-11-08T09:57:16+01:00
Update upstream source from tag 'upstream/1.6.1'

Update to upstream version '1.6.1'
with Debian dir 08a661b4c04308b1c0bdc138816e5867c1723856
- - - - -
39ea057c by Étienne Mollier at 2023-11-08T09:57:22+01:00
routine-update: Build-Depends: s/dh-python/dh-sequence-python3/

- - - - -
71ece896 by Étienne Mollier at 2023-11-08T09:57:29+01:00
Set upstream metadata fields: Bug-Database, Bug-Submit.

Changes-By: lintian-brush

- - - - -
7d562c39 by Étienne Mollier at 2023-11-08T09:58:09+01:00
set_package_field.patch: unfuzz.

- - - - -
cf9ae836 by Étienne Mollier at 2023-11-08T09:58:47+01:00
d/control: add myself to uploaders.

- - - - -
fc408e75 by Étienne Mollier at 2023-11-08T10:01:12+01:00
d/s/lintian-overrides: remove mismatched override.

The false positive very-long-line-length-in-source-file is not
tripping anymore.

- - - - -
83e77839 by Étienne Mollier at 2023-11-08T10:03:19+01:00
ready to upload to unstable.

- - - - -


8 changed files:

- debian/changelog
- debian/control
- debian/patches/set_package_field.patch
- debian/rules
- debian/source/lintian-overrides
- debian/upstream/metadata
- lamassemble
- setup.py


Changes:

=====================================
debian/changelog
=====================================
@@ -1,3 +1,17 @@
+lamassemble (1.6.1-1) unstable; urgency=medium
+
+  * New upstream version
+  * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update)
+  * Set upstream metadata fields: Bug-Database, Bug-Submit.
+    Changes-By: lintian-brush
+  * set_package_field.patch: unfuzz.
+  * d/control: add myself to uploaders.
+  * d/s/lintian-overrides: remove mismatched override.
+    The false positive very-long-line-length-in-source-file is not
+    tripping anymore.
+
+ -- Étienne Mollier <emollier at debian.org>  Wed, 08 Nov 2023 10:02:27 +0100
+
 lamassemble (1.6.0-1) unstable; urgency=medium
 
   * New upstream version 1.6.0


=====================================
debian/control
=====================================
@@ -4,9 +4,10 @@ Priority: optional
 Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
 Uploaders:
  Nilesh Patra <nilesh at debian.org>,
+ Étienne Mollier <emollier at debian.org>,
 Build-Depends:
  debhelper-compat (= 13),
- dh-python,
+ dh-sequence-python3,
  python3-all,
  python3-setuptools,
 Standards-Version: 4.6.2


=====================================
debian/patches/set_package_field.patch
=====================================
@@ -1,13 +1,13 @@
 Description: Explicitly set packages field for right file
 Author: Nilesh Patra <nilesh at debian.org>
 Last-Update: 2022-10-23
---- a/setup.py
-+++ b/setup.py
+--- lamassemble.orig/setup.py
++++ lamassemble/setup.py
 @@ -1,4 +1,5 @@
  import setuptools
 +from setuptools import find_packages
  
- commitInfo = " (HEAD -> master, tag: 1.6.0)".strip("( )").split()
+ commitInfo = " (HEAD -> master, tag: 1.6.1)".strip("( )").split()
  version = commitInfo[commitInfo.index("tag:") + 1].rstrip(",")
 @@ -6,6 +7,7 @@
  setuptools.setup(


=====================================
debian/rules
=====================================
@@ -1,4 +1,4 @@
 #!/usr/bin/make -f
 
 %:
-	dh $@ --with python3 --buildsystem=pybuild
+	dh $@ --buildsystem=pybuild


=====================================
debian/source/lintian-overrides
=====================================
@@ -1,4 +1,2 @@
-# False positive, this is a data file
-lamassemble source: very-long-line-length-in-source-file 43984 > 512 [debian/tests/data/lama-tests.out:31]
 # Testing triggers bash
 lamassemble source: test-leaves-python-version-untested [debian/tests/run-unit-test]


=====================================
debian/upstream/metadata
=====================================
@@ -1,7 +1,7 @@
 ---
 Archive: GitLab
-Bug-Database: https://gitlab.com/mcfrith/lamassemble/issues
-Bug-Submit: https://gitlab.com/mcfrith/lamassemble/issues/new
+Bug-Database: https://gitlab.com/mcfrith/lamassemble/-/issues
+Bug-Submit: https://gitlab.com/mcfrith/lamassemble/-/issues/new
 Changelog: https://gitlab.com/mcfrith/lamassemble/tags
 Repository: https://gitlab.com/mcfrith/lamassemble.git
 Repository-Browse: https://gitlab.com/mcfrith/lamassemble


=====================================
lamassemble
=====================================
@@ -227,7 +227,7 @@ def printMafftMatrix(mafftAlphabet, fwdMatrix, revMatrix, outFile):
                     score = revMatrix[3-xi][3-yi]
                 if xm == 1 and ym == 1:
                     score = fwdMatrix[3-xi][3-yi]
-            outFile.write(format(score, "6.3"))
+            outFile.write(" " + format(score, "5.3"))
         outFile.write("\n")
 
 def printMafftParams(fwdMatrix, revMatrix, mafftGapOpts, outFile):


=====================================
setup.py
=====================================
@@ -1,6 +1,6 @@
 import setuptools
 
-commitInfo = " (HEAD -> master, tag: 1.6.0)".strip("( )").split()
+commitInfo = " (HEAD -> master, tag: 1.6.1)".strip("( )").split()
 version = commitInfo[commitInfo.index("tag:") + 1].rstrip(",")
 
 setuptools.setup(



View it on GitLab: https://salsa.debian.org/med-team/lamassemble/-/compare/6fed7f36061769b7e83b9124009e99dc19a76e4e...83e7783919c87ca658c9411637a99888b0a70023

-- 
View it on GitLab: https://salsa.debian.org/med-team/lamassemble/-/compare/6fed7f36061769b7e83b9124009e99dc19a76e4e...83e7783919c87ca658c9411637a99888b0a70023
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