[med-svn] [Git][med-team/pbbam][master] 5 commits: New upstream version 2.4.0+dfsg

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / pbbam


Commits:
ac80c20d by Andreas Tille at 2023-11-08T16:45:34+01:00
New upstream version 2.4.0+dfsg
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0469b80e by Andreas Tille at 2023-11-08T16:45:34+01:00
routine-update: New upstream version

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102c6602 by Andreas Tille at 2023-11-08T16:45:38+01:00
Update upstream source from tag 'upstream/2.4.0+dfsg'

Update to upstream version '2.4.0+dfsg'
with Debian dir 1a9a63bd1ec6598c0e288a623362be8187eaf1e9
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a54faf0d by Andreas Tille at 2023-11-08T17:24:16+01:00
Bump SOVERSION as upstream does in any new version

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c057a98c by Andreas Tille at 2023-11-08T17:30:16+01:00
Upload to unstable

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30 changed files:

- CHANGELOG.md
- debian/changelog
- debian/control
- include/meson.build
- include/pbbam/BamRecordImpl.h
- include/pbbam/Config.h
- include/pbbam/ReadGroupInfo.h
- + include/pbbam/csv/CsvReader.h
- + include/pbbam/csv/CsvTypes.h
- + include/pbbam/csv/CsvWriter.h
- meson.build
- src/BamHeader.cpp
- src/BamRecordImpl.cpp
- src/Config.cpp
- src/IndexedBamWriter.cpp
- src/ReadGroupInfo.cpp
- src/SamWriter.cpp
- + src/csv/CsvReader.cpp
- + src/csv/CsvWriter.cpp
- src/meson.build
- subprojects/gtest.wrap
- subprojects/htslib.wrap
- subprojects/zlib.wrap
- + tests/data/csv/comma_separated.csv
- + tests/data/csv/comma_separated.csv.gz
- + tests/data/csv/missing_fields.csv
- + tests/data/csv/tab_separated.csv
- + tests/data/csv/tab_separated.csv.gz
- + tests/data/csv/too_many_fields.csv
- tests/src/cram/pbbamify.t.in


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/pbbam/-/compare/4f08bf75594fc7186e94f9f9bfe38c73a0558c1e...c057a98c54a07403361c88dd3f061d2f1f43427a

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View it on GitLab: https://salsa.debian.org/med-team/pbbam/-/compare/4f08bf75594fc7186e94f9f9bfe38c73a0558c1e...c057a98c54a07403361c88dd3f061d2f1f43427a
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