[med-svn] [Git][med-team/macs][upstream] New upstream version 3.0.0~b3

[Andreas Tille (@tille)]

Andreas Tille pushed to branch upstream at Debian Med / macs


Commits:
4001dbde by Andreas Tille at 2023-11-10T15:11:55+01:00
New upstream version 3.0.0~b3
- - - - -


30 changed files:

- + .dockerignore
- .github/workflows/build-and-test-MACS2-macos12.yml → .github/workflows/build-and-test-MACS3-macos12.yml
- .github/workflows/build-and-test-MACS2-non-x64.yml → .github/workflows/build-and-test-MACS3-non-x64.yml
- .github/workflows/build-and-test-MACS2-x64.yml → .github/workflows/build-and-test-MACS3-x64.yml
- + .github/workflows/publish-to-anaconda.yml
- .github/workflows/publish-to-pypi.yml
- .gitignore
- + .gitmodules
- + CONTRIBUTING.md
- ChangeLog
- − DOCKER/Dockerfile
- − DOCKER/Dockerfile-slim
- − DOCKER/README.md
- LICENSE
- − MACS2/Constants.py
- − MACS2/IO/CallPeakUnitPrecompiled.c
- − MACS2/Statistics.pyx
- − MACS2/__init__.py
- − MACS2/diffpeak_cmd.py
- − MACS2/khash.pxd
- MACS2/IO/__init__.py → MACS3/Commands/__init__.py
- MACS2/bdgbroadcall_cmd.py → MACS3/Commands/bdgbroadcall_cmd.py
- MACS2/bdgcmp_cmd.py → MACS3/Commands/bdgcmp_cmd.py
- MACS2/bdgdiff_cmd.py → MACS3/Commands/bdgdiff_cmd.py
- MACS2/bdgopt_cmd.py → MACS3/Commands/bdgopt_cmd.py
- MACS2/bdgpeakcall_cmd.py → MACS3/Commands/bdgpeakcall_cmd.py
- MACS2/callpeak_cmd.py → MACS3/Commands/callpeak_cmd.py
- + MACS3/Commands/callvar_cmd.py
- MACS2/cmbreps_cmd.py → MACS3/Commands/cmbreps_cmd.py
- + MACS3/Commands/diffpeak_cmd.py


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/macs/-/commit/4001dbde0a0da012e7545343a66edad4ded874ca

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View it on GitLab: https://salsa.debian.org/med-team/macs/-/commit/4001dbde0a0da012e7545343a66edad4ded874ca
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