[med-svn] [Git][med-team/bbmap][upstream] New upstream version 39.06+dfsg

[Étienne Mollier (@emollier)]

Étienne Mollier pushed to branch upstream at Debian Med / bbmap


Commits:
d5699b50 by Étienne Mollier at 2023-11-24T11:45:48+01:00
New upstream version 39.06+dfsg
- - - - -


30 changed files:

- README.md
- bbcrisprfinder.sh
- bbduk.sh
- bbmerge.sh
- calcmem.sh
- clumpify.sh
- current/align2/RandomReads3.java
- current/barcode/BarcodeStats.java
- current/barcode/CorrelateBarcodes.java
- current/cardinality/CardinalityTracker.java
- current/cluster/ReadTag.java
- current/consensus/BaseNode.java
- current/covid/SummarizeCoverage.java
- current/dna/AminoAcid.java
- current/fileIO/ByteFile1.java
- current/fileIO/ReadWrite.java
- − current/fun/Crunch
- current/gff/CutGff.java
- current/jgi/CountBarcodes2.java → current/gff/ParseCrispr.java
- current/hiseq/CycleTracker.java
- current/icecream/IceCreamFinder.java
- current/icecream/ReformatPacBio.java
- current/jgi/AssemblyStats2.java
- current/jgi/BBDuk.java
- current/jgi/BBDuk2.java
- current/jgi/BBMask.java
- current/jgi/BBMerge.java
- current/jgi/CallPeaks.java
- current/jgi/CheckStrand2.java
- − current/jgi/CorrelateBarcodes.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bbmap/-/commit/d5699b50c4f179c6a6af8ae2be074e6e38f1c045

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View it on GitLab: https://salsa.debian.org/med-team/bbmap/-/commit/d5699b50c4f179c6a6af8ae2be074e6e38f1c045
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