[med-svn] [Git][med-team/bbmap][master] 4 commits: routine-update: New upstream version

[Andreas Tille (@tille)]

Andreas Tille pushed to branch master at Debian Med / bbmap


Commits:
635667a5 by Andreas Tille at 2023-10-18T15:09:52+02:00
routine-update: New upstream version

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27fd6d09 by Andreas Tille at 2023-10-18T15:09:53+02:00
New upstream version 39.03+dfsg
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1a783e4e by Andreas Tille at 2023-10-18T15:10:01+02:00
Update upstream source from tag 'upstream/39.03+dfsg'

Update to upstream version '39.03+dfsg'
with Debian dir eaded04fe78cb4709681ea23a13c1a99a3c931f5
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ba797500 by Andreas Tille at 2023-10-18T15:10:02+02:00
routine-update: Standards-Version: 4.6.2

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30 changed files:

- + .gitignore
- README.md
- + bbcrisprfinder.sh
- bbmerge.sh
- + bbsort.sh
- − build.xml
- calcmem.sh
- + checkstrand.sh
- clumpify.sh
- + copyfile.sh
- + countbarcodes2.sh
- + countduplicates.sh
- current/align2/AbstractMapThread.java
- current/align2/AbstractMapper.java
- current/align2/BBSplitter.java
- current/align2/GradeSamFile.java
- current/align2/MakeRocCurve.java
- current/align2/RandomReads3.java
- current/aligner/AllToAll.java
- current/assemble/KmerCompressor.java
- current/assemble/Postfilter.java
- current/assemble/Tadpole.java
- + current/barcode/AnalyzeBarcodes.java
- + current/barcode/Barcode.java
- + current/barcode/BarcodeMappingStats.java
- + current/barcode/BarcodeStats.java
- + current/barcode/CorrelateBarcodes.java
- + current/barcode/CountBarcodes.java
- + current/barcode/CountBarcodes2.java
- current/bloom/BloomFilterCorrectorWrapper.java


The diff was not included because it is too large.


View it on GitLab: https://salsa.debian.org/med-team/bbmap/-/compare/71e1db494033178c12576aa2da78cc26fe38c72e...ba797500e1e46f1ea218b5538b8f584c16e69b44

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View it on GitLab: https://salsa.debian.org/med-team/bbmap/-/compare/71e1db494033178c12576aa2da78cc26fe38c72e...ba797500e1e46f1ea218b5538b8f584c16e69b44
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