[med-svn] [Git][med-team/htslib][debian/experimental] 193 commits: Bring the libdeflate, GCS, and S3 updates back to unstable.
Étienne Mollier (@emollier)
gitlab at salsa.debian.org
Tue Feb 20 19:14:13 GMT 2024
Étienne Mollier pushed to branch debian/experimental at Debian Med / htslib
Commits:
5886e799 by Michael R. Crusoe at 2019-01-16T05:26:08-08:00
Bring the libdeflate, GCS, and S3 updates back to unstable.
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18fc49dd by Andreas Tille at 2019-02-21T16:05:54+01:00
Install README at request of upstream
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e82fe902 by Andreas Tille at 2019-04-24T08:50:38+02:00
Stop building on any-i386
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e09b0892 by Andreas Tille at 2019-04-24T08:59:03+02:00
Upload to unstable
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7f3269c8 by Steffen Moeller at 2019-10-05T13:33:54+02:00
d/u/metadata: yamllint
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29088e10 by Steffen Möller at 2019-10-18T17:34:29+00:00
Update metadata with ref to conda
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75fe8867 by Michael R. Crusoe at 2019-12-09T19:06:06+01:00
i386 works!
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f265e194 by Michael R. Crusoe at 2019-12-09T19:16:57+01:00
update watch
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b25bb1aa by Michael R. Crusoe at 2019-12-09T19:17:17+01:00
New upstream version 1.10
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7a26bb33 by Michael R. Crusoe at 2019-12-09T19:17:19+01:00
Update upstream source from tag 'upstream/1.10'
Update to upstream version '1.10'
with Debian dir 8a2c68e38bd55b9f53ec0e56763180d925f83626
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751d33d8 by Michael R. Crusoe at 2019-12-09T19:40:23+01:00
1.10-1
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bc910b7a by Michael R. Crusoe at 2019-12-11T10:44:26+01:00
Make the build more reproducible
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11a677cf by Michael R. Crusoe at 2019-12-13T10:54:41+01:00
Fix check for config.mk.
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b03a6b14 by Michael R. Crusoe at 2019-12-13T11:00:08+01:00
Simplified arch-independent build
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52415fa2 by Michael R. Crusoe at 2019-12-13T11:33:20+01:00
rename libhts2 to libht3 & release 1.10-2
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16482427 by Michael R. Crusoe at 2019-12-16T13:56:35+01:00
report test errors better
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2f390879 by Andreas Tille at 2019-12-17T13:19:32+01:00
for some very strange reason /usr/include/htslib/cram/cram.h is using the private interface header.h. This is provided now in the libhts-private-dev package rather than htslib-test
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32684fbc by Andreas Tille at 2019-12-17T13:23:40+01:00
debhelper-compat 12
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e6d55aaf by Andreas Tille at 2019-12-17T13:24:09+01:00
R-U: DEB_BUILD_OPTIONS allow override_dh_auto_test
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98615441 by Andreas Tille at 2019-12-17T13:25:32+01:00
Remove trailing whitespace in debian/rules
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59a725c6 by Andreas Tille at 2019-12-17T13:26:33+01:00
Set upstream metadata fields: Bug-Database, Repository, Repository-Browse.
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d4a63315 by Andreas Tille at 2019-12-17T14:29:46+01:00
Fix more verbose error reporting in case of failed tests
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498fdd91 by Andreas Tille at 2019-12-17T14:34:03+01:00
Fix Perl interpreter path
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61e050b9 by Andreas Tille at 2019-12-17T14:35:36+01:00
Fix permissions of script
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581cbb1d by Andreas Tille at 2019-12-17T14:37:11+01:00
New upstream version 1.10.1
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1e5ac9f6 by Andreas Tille at 2019-12-17T14:37:13+01:00
Update upstream source from tag 'upstream/1.10.1'
Update to upstream version '1.10.1'
with Debian dir bdfed011fc46b46a73f03e9f40bd476b264ccbf8
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c438eba1 by Andreas Tille at 2019-12-17T14:37:39+01:00
Refresh patches
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feed9d29 by Andreas Tille at 2019-12-17T14:38:35+01:00
Fix syntax
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df4af758 by Andreas Tille at 2019-12-17T14:48:36+01:00
Upload to unstable
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4b30afd1 by Michael R. Crusoe at 2019-12-18T12:54:56+01:00
Fix binary-arch vs binary-indep builds
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ab476588 by Michael R. Crusoe at 2019-12-20T09:53:59-08:00
routine-update: New upstream version
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beef2a3a by Michael R. Crusoe at 2019-12-20T09:54:00-08:00
New upstream version 1.10.2
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a27c8492 by Michael R. Crusoe at 2019-12-20T09:54:01-08:00
Update upstream source from tag 'upstream/1.10.2'
Update to upstream version '1.10.2'
with Debian dir 37c1d5601d40b103dd472c834d297d6dbf0d7430
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5c682df5 by Michael R. Crusoe at 2019-12-20T10:39:31-08:00
routine-update: Ready to upload to unstable
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64fcf92f by Michael R. Crusoe at 2019-12-20T10:42:59-08:00
remove libhts-private-dev
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5a428c24 by Michael R. Crusoe at 2019-12-26T14:56:13+01:00
htslib-test: breaks+replaces libhts-private-dev
libhts3: breaks libtabixpp << 1.0.0-5~
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20679efc by Andreas Tille at 2020-01-27T08:59:09+01:00
Add Upstream-Contact
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6b350d78 by Andreas Tille at 2020-02-05T13:58:10+01:00
Use samtools-devel at lists.sourceforge.net as upstream contact (and close #950563)
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6da440eb by Michael R. Crusoe at 2020-02-13T19:23:51+01:00
Patch from upstream for big-endian systems.
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0834fa1f by Michael R. Crusoe at 2020-02-13T19:24:08+01:00
htslib-tests: multi-arch: foreign
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4d15af6e by Michael R. Crusoe at 2020-02-13T19:24:45+01:00
routine-update: Standards-Version: 4.5.0
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f6a8181b by Michael R. Crusoe at 2020-02-13T19:25:02+01:00
Set upstream metadata fields: Bug-Submit.
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3005bfd1 by Michael R. Crusoe at 2020-02-13T20:56:44+01:00
Build-Depends-Package meta-information field
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7d603b9f by Michael R. Crusoe at 2020-02-13T20:57:31+01:00
enable crossbuilding
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a22ae103 by Michael R. Crusoe at 2020-02-13T20:58:06+01:00
pass the same flags to test and install as build
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09ade287 by Michael R. Crusoe at 2020-02-13T20:58:35+01:00
match upstream's default flags
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06c80557 by Michael R. Crusoe at 2020-02-13T20:59:08+01:00
Oops, we exported too many symbols..
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76a2b7d9 by Michael R. Crusoe at 2020-02-13T20:59:09+01:00
1.10.2-3
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bf49773d by Michael R. Crusoe at 2020-06-03T21:16:33+02:00
Update Michael's email address
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972db398 by Steffen Moeller at 2020-07-04T16:51:45+02:00
Helping compilation of sambamba
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e72af99a by Steffen Moeller at 2020-07-04T16:56:23+02:00
Preparing exclusion of autoremoved files
This should facilitate the use of routine-update
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c8ef5c79 by Andreas Tille at 2020-08-03T11:37:50+02:00
routine-update: debhelper-compat 13
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6bbf2835 by Andreas Tille at 2020-08-03T11:37:56+02:00
routine-update: Add salsa-ci file
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4f1bd51f by Andreas Tille at 2020-08-03T11:48:20+02:00
Remove default debian/gbp.conf
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c538f85b by Andreas Tille at 2020-08-03T11:53:06+02:00
Install bgzip.1 manpage
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1f75fcd2 by Andreas Tille at 2020-08-03T13:06:26+02:00
Workaround issue with dh_missing
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704d3b44 by Andreas Tille at 2020-08-03T13:18:24+02:00
Revert Files-Excluded (since there is no good reason to just exclude autoconf results)
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7b9cd001 by Andreas Tille at 2020-08-03T13:26:42+02:00
Upload to unstable
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7276a1da by Andreas Tille at 2020-10-01T15:00:18+02:00
routine-update: New upstream version
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7a4a0b01 by Andreas Tille at 2020-10-01T15:00:19+02:00
New upstream version 1.11
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799d9898 by Andreas Tille at 2020-10-01T15:00:21+02:00
Update upstream source from tag 'upstream/1.11'
Update to upstream version '1.11'
with Debian dir 61a906158200bcc5541805178f16444e263810d1
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1d7c39a5 by Andreas Tille at 2020-10-01T15:10:47+02:00
Adapt patches
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b7ef6f5c by Andreas Tille at 2020-10-01T15:28:10+02:00
Update symbols file
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7b7fdc23 by Andreas Tille at 2020-10-01T15:29:37+02:00
Update patch
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a5875637 by Andreas Tille at 2020-10-01T15:35:17+02:00
Upload to unstable
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84fcfcfd by Andreas Tille at 2020-10-02T11:33:59+02:00
Fix plugin code
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88644ba8 by Andreas Tille at 2020-10-02T11:35:55+02:00
Enable plugins
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a1dcd61d by Andreas Tille at 2020-10-05T08:23:17+02:00
Add missing Depends: libcurl4-gnutls-dev, libdeflate-dev
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9605bc10 by Andreas Tille at 2020-10-05T08:34:47+02:00
Fix run-unit-test script
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7e0bf2de by Andreas Tille at 2020-10-05T08:35:06+02:00
Fix autopkgtest
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d4320da3 by Andreas Tille at 2020-10-05T08:48:19+02:00
Debian has no libexecdir - plugins should go to libdir
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f61f14e8 by Andreas Tille at 2020-10-05T08:57:07+02:00
Install plugins
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d447c4be by Andreas Tille at 2020-10-05T09:29:55+02:00
Really fix autopkgtest
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6dc308cc by Andreas Tille at 2020-10-05T09:36:32+02:00
Upload to unstable
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e0852e39 by Andreas Tille at 2020-10-07T15:07:57+02:00
No need to patch when using proper configure options
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c8be4e38 by Andreas Tille at 2020-10-07T15:13:50+02:00
Install man5 as user rather than developer documentation
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27593909 by Michael R. Crusoe at 2020-12-18T14:35:08+01:00
debian/upstream/metadata: add new pre-print
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b7f15022 by Andreas Tille at 2020-12-24T07:55:30+01:00
Fix description of tabix package
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e6510262 by Andreas Tille at 2020-12-24T07:55:47+01:00
routine-update: Standards-Version: 4.5.1
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25433591 by Andreas Tille at 2020-12-24T07:55:53+01:00
Update renamed lintian tag names in lintian overrides.
Changes-By: lintian-brush
Fixes: lintian: renamed-tag
See-also: https://lintian.debian.org/tags/renamed-tag.html
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21425b04 by Andreas Tille at 2020-12-24T10:28:55+01:00
Normalise changelog
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c5eda002 by Andreas Tille at 2020-12-24T10:34:27+01:00
Somehow installation of htslib dir has changed
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026580ee by Andreas Tille at 2020-12-24T10:41:09+01:00
Upload to unstable
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e48a3fd9 by Michael R. Crusoe at 2021-01-02T16:28:35+01:00
libhts3: Breaks+Replaces: libhts-dev (<< 1.11-3). Closes: #978094
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9e2c25f7 by Steffen Moeller at 2021-05-24T16:51:26+02:00
routine-update: New upstream version
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f64d8d5e by Steffen Moeller at 2021-05-24T16:51:32+02:00
New upstream version 1.12
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c1a13ff7 by Steffen Moeller at 2021-05-24T16:51:39+02:00
Update upstream source from tag 'upstream/1.12'
Update to upstream version '1.12'
with Debian dir 36fd10eca866a4456f0a680e3a455e0230b819ff
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81db07f4 by Steffen Moeller at 2021-05-24T16:59:47+02:00
Patch accepted upstream.
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e9a42778 by Steffen Moeller at 2021-05-24T17:00:25+02:00
Adjust d/patches
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c5e22a5a by Steffen Moeller at 2021-05-24T17:03:27+02:00
Completed d/u/metadata, adjusted indenting
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9c41abf2 by Steffen Moeller at 2021-05-24T22:57:50+02:00
Update 1.11 -> 1.12
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34a92858 by Steffen Moeller at 2021-05-26T00:25:15+02:00
Preparing removal of htscodecs folder
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d2d58046 by Steffen Moeller at 2021-05-26T00:25:37+02:00
New upstream version 1.12+ds
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6015b5d7 by Steffen Moeller at 2021-05-26T00:25:41+02:00
Update upstream source from tag 'upstream/1.12+ds'
Update to upstream version '1.12+ds'
with Debian dir 1ac1339737809f4456b708f868f905ec68c1b140
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ed44a8af by Steffen Moeller at 2021-08-25T19:15:34+02:00
New upstream version 1.13+ds
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62aaba2c by Steffen Moeller at 2021-08-25T19:15:38+02:00
Update upstream source from tag 'upstream/1.13+ds'
Update to upstream version '1.13+ds'
with Debian dir 1ac1339737809f4456b708f868f905ec68c1b140
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02efcf94 by Steffen Moeller at 2021-08-25T20:59:55+02:00
Adapting for new upstream version.
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0d1ccf63 by Steffen Moeller at 2021-08-25T21:01:06+02:00
New upstream version 1.13+ds
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bfc8ef1d by Steffen Moeller at 2021-08-25T21:01:09+02:00
Update upstream source from tag 'upstream/1.13+ds'
Update to upstream version '1.13+ds'
with Debian dir 014ccbbe203ff5d560251c569763e6cc22747e3b
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797f6e47 by Steffen Moeller at 2021-08-26T14:55:51+02:00
Adjusted symbols
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781701ec by Steffen Moeller at 2021-08-26T14:58:30+02:00
d/u/metadata: ref to bio.tools
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90898165 by Andreas Tille at 2021-08-26T15:05:09+02:00
routine-update: Standards-Version: 4.6.0
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7b9347b8 by Andreas Tille at 2021-08-26T15:09:24+02:00
routine-update: Do not parse d/changelog
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7a22b467 by Andreas Tille at 2021-08-26T15:10:56+02:00
Remove constraints unnecessary since buster
* libhts3: Drop versioned constraint on python-pysam in Breaks.
Changes-By: deb-scrub-obsolete
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d301d670 by Andreas Tille at 2021-08-26T15:12:44+02:00
Cleanup changelog
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1a3dbeb5 by Andreas Tille at 2021-08-26T15:13:25+02:00
there is no patch debian-changes (and there should not be such a patch)
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98bef590 by Andreas Tille at 2021-08-26T19:12:20+02:00
Upload to unstable
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1905c92e by Étienne Mollier at 2021-08-27T19:18:28+02:00
d/control: add myself to uploaders
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f2011817 by Étienne Mollier at 2021-08-27T19:18:59+02:00
update changelog
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447be1bd by Étienne Mollier at 2021-08-27T20:12:57+02:00
d/control: libhts-dev breaks samtools (<< 1.13~)
This is necessary to break britney loop preventing migration to
testing. Thanks Nilesh for the tip!
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3c03b390 by Étienne Mollier at 2021-08-27T21:59:38+02:00
d/control: refresh libhts-dev Breaks+Replaces
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000118d3 by Étienne Mollier at 2021-08-27T22:01:27+02:00
d/control: libhts-dev breaks ivar (<< 1.3.1~)
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d9cee590 by Étienne Mollier at 2021-08-27T22:03:10+02:00
update changelog for unstable
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a726cb92 by Andreas Tille at 2021-12-07T08:10:19+01:00
routine-update: New upstream version
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f00cee51 by Andreas Tille at 2021-12-07T08:10:19+01:00
New upstream version 1.14+ds
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cf3a0458 by Andreas Tille at 2021-12-07T08:10:21+01:00
Update upstream source from tag 'upstream/1.14+ds'
Update to upstream version '1.14+ds'
with Debian dir 7a0935f7015a3e98e4a8b2596623667a8126e6e8
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69723fe7 by Andreas Tille at 2021-12-07T08:10:44+01:00
Remove constraints unnecessary since buster
* libhts3: Drop versioned constraint on python3-pysam in Breaks.
Changes-By: deb-scrub-obsolete
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b02a95b5 by Andreas Tille at 2021-12-07T08:28:26+01:00
Refresh patches
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e16582ee by Andreas Tille at 2021-12-07T14:45:07+01:00
Upload to experimental
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3b44e47c by Andreas Tille at 2022-09-29T13:39:16+02:00
routine-update: New upstream version
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26ded644 by Andreas Tille at 2022-09-29T13:39:17+02:00
New upstream version 1.16+ds
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b5cf4845 by Andreas Tille at 2022-09-29T13:39:18+02:00
Update upstream source from tag 'upstream/1.16+ds'
Update to upstream version '1.16+ds'
with Debian dir 6f251b28736230eeb8505227f5ac66110df7dd6a
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8a288849 by Andreas Tille at 2022-09-29T13:39:18+02:00
routine-update: Standards-Version: 4.6.1
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64a77c9f by Andreas Tille at 2022-09-29T13:44:27+02:00
Refresh patches
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c49ca309 by Andreas Tille at 2022-09-30T10:22:03+02:00
Make sure all symbols of libhts will be really found
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5f71a206 by Andreas Tille at 2022-09-30T10:29:18+02:00
Add FIXME
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0db89314 by Andreas Tille at 2022-09-30T11:09:53+02:00
Additional symbols
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bbebde54 by Andreas Tille at 2022-09-30T11:16:38+02:00
Fix lintian-overrides
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2905146f by Andreas Tille at 2022-09-30T11:21:18+02:00
Fix build options to make sure symbols will remain in library
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3509b32f by Andreas Tille at 2022-09-30T11:22:36+02:00
For some reason we have now even more symbols inside the library - may be this is connected to the -ffat-lto-objects just added in previous commit?
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7d376003 by Andreas Tille at 2022-09-30T11:26:55+02:00
Upload to unstable
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319cb229 by Nilesh Patra at 2022-09-30T20:09:01+05:30
Copy htslib.pc.in also to AUTOPKGTEST_TMP
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c1ab6cb0 by Nilesh Patra at 2022-10-01T08:58:37+05:30
Pass correct upstream version so as to not get the +ds non-sense in SOVERSIONS
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dd89fe34 by Nilesh Patra at 2022-10-01T11:01:23+05:30
Upload to unstable
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a22ba2ad by Étienne Mollier at 2022-10-19T16:39:49+02:00
d/rules: make sure libdir and plugindir are defined.
This fixes issues caught downstream, reported upstream[1] and
forwarded to the mailing list[2]. The change also ventilates the
dh_auto_configure step, which is barely readable when horizontal
scrolling is involved.
[1]: https://github.com/samtools/htslib/issues/1515
[2]: https://lists.debian.org/debian-med/2022/10/msg00064.html
Thanks: James Bonfield
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b90cee6a by Étienne Mollier at 2022-10-19T16:53:12+02:00
d/libhts3.install: relocate plugins following fix at configure step.
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ffb8c0af by Étienne Mollier at 2022-10-19T16:59:59+02:00
d/*.install: remove dh-exec shebang.
Since debhelper-compat 13, dh is able to parse install directives with
expansion of dpkg-architecture variables.
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f956d5ac by Étienne Mollier at 2022-10-19T17:01:21+02:00
d/control: remove build-dependency to dh-exec.
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b34edc81 by Étienne Mollier at 2022-10-19T17:02:39+02:00
ready to upload to unstable.
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94dbb268 by Étienne Mollier at 2022-10-19T17:59:41+02:00
un-release.
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8801e313 by Étienne Mollier at 2022-10-19T19:05:29+02:00
disable_plugin_loading_test.patch: remove; test is supposed to pass.
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9b013cdd by Étienne Mollier at 2022-10-19T22:16:35+02:00
d/rules: do not erase LDFLAGS.
The build procedure requires some specific flags such as -rdynamic
to make plugins usable. There is probably more room for improvement
but that should be sufficient for now.
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6e307027 by Étienne Mollier at 2022-10-19T22:19:18+02:00
d/patches/: remove unused patches.
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d211e8e6 by Étienne Mollier at 2022-10-19T22:25:35+02:00
trim-file-prefix.patch: add; improve reproducible build.
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e317c719 by Étienne Mollier at 2022-10-19T22:26:50+02:00
ready to upload to unstable.
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da0e225f by Étienne Mollier at 2023-06-11T15:15:39+02:00
routine-update: New upstream version
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edcf7093 by Étienne Mollier at 2023-06-11T15:15:40+02:00
New upstream version 1.17+ds
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a74b7d95 by Étienne Mollier at 2023-06-11T15:15:42+02:00
Update upstream source from tag 'upstream/1.17+ds'
Update to upstream version '1.17+ds'
with Debian dir f3057c68b5a6cdf4da4a716d162ba9fbf554fcae
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5c299fc8 by Étienne Mollier at 2023-06-11T15:15:42+02:00
routine-update: Standards-Version: 4.6.2
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964596f2 by Étienne Mollier at 2023-06-11T15:18:47+02:00
d/control: fix indentation in build dependencies
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ce668256 by Étienne Mollier at 2023-06-11T15:19:24+02:00
d/control: clear fields with obsolete packages
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f78af997 by Étienne Mollier at 2023-06-11T15:19:48+02:00
no_git_version patch: forwarding not-needed
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f8d94e58 by Étienne Mollier at 2023-06-11T15:24:56+02:00
fPIC.patch: unfuzz
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85982375 by Étienne Mollier at 2023-06-11T15:25:28+02:00
cram_to_bam_export.patch: unfuzz
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760426bc by Étienne Mollier at 2023-06-11T15:25:45+02:00
fix_sequence_of_linked_libs.patch: unfuzz
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39e64da4 by Étienne Mollier at 2023-06-11T15:33:22+02:00
trim-file-prefix.patch: refresh
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2bd712a9 by Étienne Mollier at 2023-06-11T15:41:13+02:00
update changelog (with TODO item)
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1cfe4203 by Étienne Mollier at 2023-06-11T18:58:14+02:00
fix-cram-external-header.patch: new patch
This fixes a typo causing failure to build from source.
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ba6605ab by Étienne Mollier at 2023-06-11T19:25:29+02:00
d/changelog: TODO item resolved
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020ac267 by Étienne Mollier at 2023-06-11T19:27:10+02:00
d/libhts3.symbols: update symbols table.
Upstream is now tracking symbols versionning. The diff is large with
numerous missing entries, but that is because of the "@Base" being
replaced by the the versioned "@HTSLIB_*" entries.
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09537962 by Étienne Mollier at 2023-06-11T20:04:11+02:00
d/t/run-unit-test: copy htslib.map.
This file is needed for one of the linking tests done during the
autopkgtest run, otherwise it fails.
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bba69f75 by Étienne Mollier at 2023-06-11T20:05:33+02:00
fix-whatis-entry.patch: new patch
This change fixes a bad whatis(1) entry caught by lintian.
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5dc37525 by Étienne Mollier at 2023-06-11T20:21:56+02:00
ready to upload to experimental
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02f711ae by Étienne Mollier at 2023-06-22T22:20:07+02:00
initialize changelog.
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659025f0 by Étienne Mollier at 2023-06-22T22:21:27+02:00
d/control: declare libhts3 breaks samtools < 1.17.
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98afac3c by Étienne Mollier at 2023-06-22T22:21:55+02:00
ready to upload to unstable
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96b44799 by Étienne Mollier at 2023-08-23T18:19:49+02:00
routine-update: New upstream version
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60163499 by Étienne Mollier at 2023-08-23T18:19:50+02:00
New upstream version 1.18+ds
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ee013c77 by Étienne Mollier at 2023-08-23T18:19:53+02:00
Update upstream source from tag 'upstream/1.18+ds'
Update to upstream version '1.18+ds'
with Debian dir bc4dbd5089ab5b13afcbd992f45cdc7ef69640b8
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bed6ebb6 by Étienne Mollier at 2023-08-23T18:23:39+02:00
testShebang.patch: refresh.
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31292517 by Étienne Mollier at 2023-08-23T18:24:00+02:00
fix_float_precision: refresh patch.
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648022fc by Étienne Mollier at 2023-08-23T18:24:26+02:00
cram_to_bam_export.patch: refresh.
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b7ccd385 by Étienne Mollier at 2023-08-23T18:24:50+02:00
fix_sequence_of_linked_libs.patch: refresh.
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55168bce by Étienne Mollier at 2023-08-23T18:25:26+02:00
trim-file-prefix.patch: refresh.
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0446aeb5 by Étienne Mollier at 2023-08-23T18:26:07+02:00
fix-cram-external-header.patch: remove: applied upstream.
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422e192a by Étienne Mollier at 2023-08-23T18:27:00+02:00
fix-whatis-entry.patch: remove: applied upstream.
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849252a5 by Étienne Mollier at 2023-08-23T18:37:01+02:00
debian/*.symbols*: introduce new symbols.
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6535d43c by Étienne Mollier at 2023-08-23T18:41:50+02:00
d/copyright: update upstream copyright year.
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d39067b3 by Étienne Mollier at 2023-08-23T18:42:22+02:00
ready to upload to experimental.
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fa38ad4d by Étienne Mollier at 2023-08-23T18:58:40+02:00
remove duplicate changelog entry.
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a0209e9c by Étienne Mollier at 2023-11-07T19:53:38+01:00
ready to upload to unstable.
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1d7d7229 by Étienne Mollier at 2023-12-15T17:43:35+01:00
New upstream version 1.19+ds
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796b3603 by Étienne Mollier at 2023-12-15T17:43:35+01:00
routine-update: New upstream version
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d2db933b by Étienne Mollier at 2023-12-15T17:43:37+01:00
Update upstream source from tag 'upstream/1.19+ds'
Update to upstream version '1.19+ds'
with Debian dir 4e5b370add5dffbd4633bfcdf8c3da17aeae4ef7
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7833ecc2 by Étienne Mollier at 2023-12-15T17:44:46+01:00
fix_float_precision: refresh patch.
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9bfdc828 by Étienne Mollier at 2023-12-15T17:45:12+01:00
fix_sequence_of_linked_libs: refresh patch.
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7a962e37 by Étienne Mollier at 2023-12-15T17:45:30+01:00
trim-file-prefix.patch: refresh.
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3134c422 by Étienne Mollier at 2023-12-15T22:20:23+01:00
d/libhts3.symbols: remove recorded symbol!
bgzf_idx_amend_last was recorded by accident and is not part of the
internals of the htslib anymore. Reverse dependencies had no way of
using this function by accident, as it is not part of the public API,
and preliminary tests against reverse dependencies show no regressions
seemingly related to the missing symbol.
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1ab49c31 by Étienne Mollier at 2023-12-15T22:24:00+01:00
reinject-bgzf_idx_amend_last.patch: unapplied new.
This patch is kept handy to reintroduce missing bgzf_idx_amend_last
symbol if need be, but it is not applied yet.
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48e87fc1 by Étienne Mollier at 2023-12-15T22:27:05+01:00
ready to upload to experimental.
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5b5bb5e1 by Étienne Mollier at 2024-02-17T11:46:58+01:00
ready changelog for migration to unstable.
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aaa59244 by Étienne Mollier at 2024-02-20T20:05:56+01:00
Rename libraries for 64-bit time_t transition.
This change was initially proposed as NMU, but it didn't make it to
experimental due to a conflicting version already present at the time
of the upload. See also #1062344.
Thanks: Graham Inggs for the initial version and work on 64-bit time_t
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12ecab41 by Étienne Mollier at 2024-02-20T20:12:55+01:00
ready for 64-bit time_t experimental upload.
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6 changed files:
- INSTALL
- LICENSE
- Makefile
- NEWS
- README
- + README.large_positions.md
The diff was not included because it is too large.
View it on GitLab: https://salsa.debian.org/med-team/htslib/-/compare/d983dc52326cfb0fd6f0258532f33dbbd386401c...12ecab4165221a247e58cdb8085d8644da4a3281
--
View it on GitLab: https://salsa.debian.org/med-team/htslib/-/compare/d983dc52326cfb0fd6f0258532f33dbbd386401c...12ecab4165221a247e58cdb8085d8644da4a3281
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