[med-svn] [Git][med-team/macs][master] 2 commits: no longer FTBFS with cython3 3.x

[Michael R. Crusoe (@crusoe)]

Michael R. Crusoe pushed to branch master at Debian Med / macs


Commits:
958fb100 by Michael R. Crusoe at 2024-01-22T11:55:37+01:00
no longer FTBFS with cython3 3.x

- - - - -
a1d1a181 by Michael R. Crusoe at 2024-01-22T12:50:57+01:00
d/rules: choose a better path to the launch script for testing

- - - - -


2 changed files:

- debian/changelog
- debian/rules


Changes:

=====================================
debian/changelog
=====================================
@@ -1,7 +1,7 @@
 macs (3.0.0-1) UNRELEASED; urgency=medium
 
   [ Andreas Tille ]
-  * New upstream version
+  * New upstream version. Closes: #1056813
   * New Build-Depends: python3-cykhash, python3-hmmlearn
   * Fix location of simde header
   * No runtime dependency from cython
@@ -19,6 +19,13 @@ macs (3.0.0-1) UNRELEASED; urgency=medium
     up Python 3.12 support.
   * d/control: build dep on newer packaging version of hmmlearn to pick
     up Python 3.12 support.
+  * d/rules: choose a better path to the launch script for testing
+
+  TODO: cmdline test failures:
+   16.18.1 checking hmmratac hmmratac_yeast500k_accessible_regions.gappedPeak
+   16.18.2 checking hmmratac hmmratac_yeast500k_bedpe_accessible_regions.gappedPeak
+   16.18.3 checking hmmratac hmmratac_yeast500k_load_hmm_model_accessible_regions.gappedPeak
+   16.18.4 checking hmmratac hmmratac_yeast500k_load_training_regions_accessible_regions.gappedPeak
 
  -- Michael R. Crusoe <crusoe at debian.org>  Wed, 15 Nov 2023 20:44:36 +0100
 


=====================================
debian/rules
=====================================
@@ -35,7 +35,7 @@ ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
 	dh_auto_test
 ifeq (,$(filter $(DEB_HOST_ARCH),arm64 ppc64el s390x))
 	cd test && for PY3VER in $(shell py3versions -vs); do \
-	export PATH=$(CURDIR)/build/scripts-$${PY3VER}:$$PATH \
+	export PATH=$(CURDIR)/.pybuild/cpython3_$${PY3VER}_MACS3/scripts:$$PATH \
 		&& export PYTHONPATH=$(CURDIR)/.pybuild/cpython3_$${PY3VER}_MACS3/build \
 		&& ./cmdlinetest macs$(DEB_VERSION)-$${PY3VER} ; done
 endif



View it on GitLab: https://salsa.debian.org/med-team/macs/-/compare/9a00f65dfc664136c7336c8dea47392af2625f5f...a1d1a18148e30df21ee8cd82778f7d817b676467

-- 
View it on GitLab: https://salsa.debian.org/med-team/macs/-/compare/9a00f65dfc664136c7336c8dea47392af2625f5f...a1d1a18148e30df21ee8cd82778f7d817b676467
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