<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en">
<head>
<meta content="text/html; charset=utf-8" http-equiv="Content-Type">
<title>
GitLab
</title>
<style>img {
max-width: 100%; height: auto;
}
</style>
</head>
<body>
<div class="content">
<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/picard-tools">Debian Med / picard-tools</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/picard-tools/commit/60f0c861d4133e4479af9dd51af122154491ed73">60f0c861</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-04-17T16:41:27+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.18.2+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/picard-tools/commit/2a82886355abdf347be098b19d92c533bc882f5d">2a828863</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-04-17T16:42:11+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.18.2+dfsg'
Update to upstream version '2.18.2+dfsg'
with Debian dir 1a713756b716baa60c31f1298a336ae7d2f08459</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/picard-tools/commit/63de9cdf156d4f30d4a71daf1e2e78470804e1c8">63de9cdf</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-04-17T22:46:59+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version, adapt patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/picard-tools/commit/14d48ba87eba67c50c4ff5a4e065886667ba7e54">14d48ba8</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-04-17T22:48:29+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">DEP3
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/picard-tools/commit/336acb9fe7c8754bb770735746881dff9abc0555">336acb9f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-04-17T22:52:35+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Backports-friendly debhelper 11
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/picard-tools/commit/0ae95078608290068f564e4f32890ec2ab94fa98">0ae95078</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-04-17T22:55:53+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Bump versioned Build-Depends on libhtsjdk-java and default-jdk
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#05a721ebe3ba0754116825ed1359ff1785f4bbac">
.dockerignore
</a>
</li>
<li class="file-stats">
<a href="#1d2890ccc6f31c6d4f30a94a677ef21cf214f0f4">
<span class="new-file">
+
.pullapprove.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
</a>
</li>
<li class="file-stats">
<a href="#6651ddff6eb82c840ced7c1dddee15c6e1913dd4">
Dockerfile
</a>
</li>
<li class="file-stats">
<a href="#79b82ce9b64a924266619555502f890dd80c83b9">
<span class="new-file">
+
LICENSE.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#f07866736216be0ee2aba49e392191aeae700a35">
build.gradle
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#e186644cad34bbb8e38eb75706855e6cd177ad48">
debian/patches/10-build.xml.patch
</a>
</li>
<li class="file-stats">
<a href="#4851dcaa1d5c2005435e71f102230da1daac1df0">
debian/patches/20-shadowjar.patch
</a>
</li>
<li class="file-stats">
<a href="#4416da23ca69dd7403c07c230b77bb0c32e0abb1">
debian/patches/30-tests-fix-dataprovider.patch
</a>
</li>
<li class="file-stats">
<a href="#2112a29d6b2dc089fd18634ad82cb140e99b56c6">
debian/patches/40-tests-fix-testng.patch
</a>
</li>
<li class="file-stats">
<a href="#fbe448ebfc3eb2d4e308f6b8b043666f5b57235e">
gradle/wrapper/gradle-wrapper.properties
</a>
</li>
<li class="file-stats">
<a href="#05efc8b1657769a27696d478ded1e95f38737233">
settings.gradle
</a>
</li>
<li class="file-stats">
<a href="#6303e4e5f50dc087084890bd916d3dd0c44283e8">
src/main/java/picard/Test.java
</a>
</li>
<li class="file-stats">
<a href="#025d792d6ca480e8aa317c5d5200191baa96e8b1">
<span class="new-file">
+
src/main/java/picard/analysis/AbstractWgsMetricsCollector.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#bac4c9ac8d5063b8b48c84e1a30915ee1d4b4523">
src/main/java/picard/analysis/AlignmentSummaryMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#39ad2a42470243aa1402488d16e8309995fc1180">
src/main/java/picard/analysis/AlignmentSummaryMetricsCollector.java
</a>
</li>
<li class="file-stats">
<a href="#3a02115cc24686ccecd94ec7f340c5890a553d38">
src/main/java/picard/analysis/CollectAlignmentSummaryMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#8d7507e76526876f60daef574438762bd6f57ab0">
src/main/java/picard/analysis/CollectBaseDistributionByCycle.java
</a>
</li>
<li class="file-stats">
<a href="#39018791387cf476a9ea4511dd7a82d4982e3c05">
src/main/java/picard/analysis/CollectGcBiasMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#a8427986ca1c000c6402307f4ef77043d503630e">
src/main/java/picard/analysis/CollectInsertSizeMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#5a50cf7890c2934c93d21101ade49bf5551587ea">
src/main/java/picard/analysis/CollectJumpingLibraryMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#2269f0b41b877093e5ef84c96198be511137ddbc">
src/main/java/picard/analysis/CollectMultipleMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#c224cce9721892da1834c94773de15da5dd22df4">
src/main/java/picard/analysis/CollectOxoGMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#b2834490f63ed514ea04878a07bfeb9a3745de6c">
src/main/java/picard/analysis/CollectQualityYieldMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#bd1790f1783da7252384ebb46fb793aebd94697f">
src/main/java/picard/analysis/CollectRawWgsMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#ef73529293175de94b68d4817a681e5643b34dd8">
src/main/java/picard/analysis/CollectRnaSeqMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#13f54df4e2b29414eecb5c0cbc1da4d3e02dc14e">
src/main/java/picard/analysis/CollectRrbsMetrics.java
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #777;">
—
<br>
<a href="https://salsa.debian.org/med-team/picard-tools/compare/e77131a1bc920e0851e0ac3fd85530b047278399...0ae95078608290068f564e4f32890ec2ab94fa98">View it on GitLab</a>.
<br>
You're receiving this email because of your account on salsa.debian.org.
If you'd like to receive fewer emails, you can
adjust your notification settings.
</p>
</div>
</body>
</html>