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<h3>
Gianfranco Costamagna pushed to branch master
at <a href="https://salsa.debian.org/med-team/sambamba">Debian Med / sambamba</a>
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<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/sambamba/commit/70a64c85093a63d0aefb1b29281b4679c005e954">70a64c85</a></strong>
<div>
<span>by Gianfranco Costamagna</span>
<i>at 2018-04-18T12:30:27+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">disable assert on i386, to be removed once the new release is out
</pre>
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<strong><a href="https://salsa.debian.org/med-team/sambamba/commit/2109b2c6ea3290070e37843564f79399acfe4cca">2109b2c6</a></strong>
<div>
<span>by Gianfranco Costamagna</span>
<i>at 2018-04-18T12:37:46+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update changelog file
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<h4>3 changed files:</h4>
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#265b82f9cbf3a85696cbcc15744a03207b3514c8">
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+
debian/patches/disable-assert.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/sambamba/compare/9484f5e6b7cb08153525cc350a06e8c9718479d1...2109b2c6ea3290070e37843564f79399acfe4cca#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="mosel"><span class="n" style="color: #333;">sambamba</span> <span class="p">(</span><span class="m" style="color: #099;">0.6.7</span><span class="p">-</span><span class="m" style="color: #099;">2</span><span class="p">)</span> <span class="n" style="color: #333;">unstable</span><span class="p">;</span> <span class="n" style="color: #333;">urgency</span><span class="p">=</span><span class="n" style="color: #333;">medium</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="mosel"></span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
3
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC3" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Team</span> <span class="n" style="color: #333;">upload</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Disable</span> <span class="nb" style="color: #0086b3;">assert</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">i386</span><span class="p">,</span> <span class="n" style="color: #333;">this</span> <span class="n" style="color: #333;">is</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">new</span> <span class="nb" style="color: #0086b3;">assert</span><span class="p">,</span> <span class="n" style="color: #333;">but</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">current</span></span>
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
5
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC5" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">package</span> <span class="n" style="color: #333;">is</span> <span class="n" style="color: #333;">already</span> <span class="n" style="color: #333;">broken</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">i386</span><span class="p">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC6" class="line" lang="mosel"> <span class="n" style="color: #333;">Upstream</span> <span class="n" style="color: #333;">is</span> <span class="n" style="color: #333;">working</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">a</span> <span class="n" style="color: #333;">proper</span> <span class="n" style="color: #333;">fix</span><span class="p">,</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">meantime</span> <span class="n" style="color: #333;">we</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">let</span></span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
7
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC7" class="line" lang="mosel"> <span class="n" style="color: #333;">the</span> <span class="k" style="font-weight: 600;">package</span> <span class="n" style="color: #333;">migrate</span> <span class="n" style="color: #333;">without</span> <span class="n" style="color: #333;">removing</span> <span class="n" style="color: #333;">i386</span> <span class="k" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">making</span> <span class="n" style="color: #333;">things</span> <span class="n" style="color: #333;">worse</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="mosel"> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">this</span> <span class="n" style="color: #333;">architecture</span><span class="p">.</span> <span class="n" style="color: #333;">Closes</span><span class="p">:</span> <span class="p">#</span><span class="m" style="color: #099;">893664</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="mosel"> <span class="n" style="color: #333;">See</span><span class="p">:</span> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">github</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">/</span><span class="n" style="color: #333;">biod</span><span class="p">/</span><span class="n" style="color: #333;">sambamba</span><span class="p">/</span><span class="n" style="color: #333;">issues</span><span class="p">/</span><span class="m" style="color: #099;">344</span> <span class="p">(</span><span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">issue</span> <span class="m" style="color: #099;">300</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="mosel"></span>
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<td class="diff-line-num new new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="mosel"> <span class="p">[</span> <span class="n" style="color: #333;">Steffen</span> <span class="n" style="color: #333;">M</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">ö</span><span class="n" style="color: #333;">ller</span> <span class="p">]</span></span>
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<td class="diff-line-num new new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Update</span> <span class="n" style="color: #333;">upstream</span> <span class="n" style="color: #333;">metadata</span> <span class="n" style="color: #333;">file</span></span>
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<td class="diff-line-num new new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="mosel"></span>
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<td class="diff-line-num new new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="mosel"> <span class="p">[</span> <span class="n" style="color: #333;">Matthias</span> <span class="n" style="color: #333;">Klumpp</span> <span class="p">]</span></span>
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<td class="diff-line-num new new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Fail</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">missing</span> <span class="n" style="color: #333;">files</span></span>
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<td class="diff-line-num new new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="mosel"> <span class="p">*</span> <span class="k" style="font-weight: 600;">Do</span> <span class="k" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">force</span> <span class="n" style="color: #333;">disable</span> <span class="k" style="font-weight: 600;">of</span> <span class="n" style="color: #333;">neon</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">armhf</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">rules</span> <span class="n" style="color: #333;">file</span><span class="p">,</span> <span class="n" style="color: #333;">already</span></span>
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<td class="diff-line-num new new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="mosel"> <span class="n" style="color: #333;">handled</span> <span class="n" style="color: #333;">by</span> <span class="n" style="color: #333;">dh</span><span class="p">-</span><span class="n" style="color: #333;">dlang</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="mosel"></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="mosel"> <span class="p">[</span> <span class="n" style="color: #333;">Andreas</span> <span class="n" style="color: #333;">Tille</span> <span class="p">]</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">typo</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">metadata</span> <span class="n" style="color: #333;">file</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="mosel"> <span class="p">--</span> <span class="n" style="color: #333;">Gianfranco</span> <span class="n" style="color: #333;">Costamagna</span> <span class="p"><</span><span class="n" style="color: #333;">locutusofborg</span><span class="p">@</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">></span> <span class="n" style="color: #333;">Wed</span><span class="p">,</span> <span class="m" style="color: #099;">18</span> <span class="n" style="color: #333;">Apr</span> <span class="m" style="color: #099;">2018</span> <span class="m" style="color: #099;">12</span><span class="p">:</span><span class="m" style="color: #099;">10</span><span class="p">:</span><span class="m" style="color: #099;">12</span> <span class="p">+</span><span class="m" style="color: #099;">0200</span></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="mosel"><span class="n" style="color: #333;">sambamba</span> <span class="p">(</span><span class="m" style="color: #099;">0.6.7</span><span class="p">-</span><span class="m" style="color: #099;">1</span><span class="p">)</span> <span class="n" style="color: #333;">unstable</span><span class="p">;</span> <span class="n" style="color: #333;">urgency</span><span class="p">=</span><span class="n" style="color: #333;">medium</span></span>
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2
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="mosel"></span>
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3
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="mosel"> <span class="p">[</span> <span class="n" style="color: #333;">Steffen</span> <span class="n" style="color: #333;">Moeller</span> <span class="p">]</span></span>
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<li id="265b82f9cbf3a85696cbcc15744a03207b3514c8">
<a href="https://salsa.debian.org/med-team/sambamba/compare/9484f5e6b7cb08153525cc350a06e8c9718479d1...2109b2c6ea3290070e37843564f79399acfe4cca#265b82f9cbf3a85696cbcc15744a03207b3514c8"><strong>debian/patches/disable-assert.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff">Description: Disable assert started failing on 0583f4940a81166d856b5537a920d12113c86530</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff">Author: Gianfranco Costamagna <locutusofborg@debian.org></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff">Bug-Debian: https://bugs.debian.org/893664</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff">Last-Update: 2018-03-21</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- sambamba-0.6.7.orig/sambamba/markdup.d</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ sambamba-0.6.7/sambamba/markdup.d</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -606,7 +606,7 @@ struct PairedEndsInfo {</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> }</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> }</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-static assert(PairedEndsInfo.sizeof == 40);</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+// static assert(PairedEndsInfo.sizeof == 40);</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> bool singleEndInfoComparator(S1, S2)(auto ref S1 s1, auto ref S2 s2) {</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> if (s1.library_id < s2.library_id) return true;</span></pre>
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<a href="https://salsa.debian.org/med-team/sambamba/compare/9484f5e6b7cb08153525cc350a06e8c9718479d1...2109b2c6ea3290070e37843564f79399acfe4cca#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">01_add_meson.patch</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">disable-assert.patch</span></pre>
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