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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/bcftools">Debian Med / bcftools</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcftools/commit/9f21ec822be3e6a606f871816697430391c26963">9f21ec82</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-04-20T11:17:30+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.8</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcftools/commit/d28e5b1c1e7a8edbefca36672fef479ee0f36161">d28e5b1c</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-04-20T11:17:43+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.8'
Update to upstream version '1.8'
with Debian dir 7c6dd05dc20c0e78af335c6f07b66a99fc9bd763</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcftools/commit/9cf4f19fa8c4dd5465c42e47a9d47b9aaf61dd16">9cf4f19f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-04-20T11:22:42+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.8</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcftools/commit/67fb628dc2075cdc96c7db69187c7eb0d2bee261">67fb628d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-04-20T11:22:55+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.8'
Update to upstream version '1.8'
with Debian dir 7c6dd05dc20c0e78af335c6f07b66a99fc9bd763</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcftools/commit/27af1f682bb52ba891728849389c30b21d7d5e0f">27af1f68</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-04-20T11:35:46+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.8</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcftools/commit/4ade513dd8ce114665c6cef8c6d99e844713b2fe">4ade513d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-04-20T11:35:59+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.8'
Update to upstream version '1.8'
with Debian dir 7c6dd05dc20c0e78af335c6f07b66a99fc9bd763</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcftools/commit/5bf454ba334917abdec1fb2f86b720aabfa7fc07">5bf454ba</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-04-20T11:35:59+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcftools/commit/1708fc80f46f594fea29471f88a1d048697820dc">1708fc80</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-04-20T11:36:01+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Point Vcs fields to salsa.debian.org
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcftools/commit/cd8d84e2820ca3665b83d5f0ca49f0b6d4d5f7fd">cd8d84e2</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-04-20T11:36:01+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.1.4
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcftools/commit/5a72eb4198b28d22c91fa0f83deec982ff715317">5a72eb41</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-04-20T11:36:01+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debhelper 11
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcftools/commit/c77762a4bfb13f69a971c28fb64534c4953770fc">c77762a4</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-04-20T11:42:20+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remember that Afif does not like cme formatting and revert it, cme has also a bug regarding comments
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcftools/commit/0a2bc114f109326af34bdc5f548ebfeb1c08b3b3">0a2bc114</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-04-20T11:57:45+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#c335a27a082cc8d17dd36dc0eda3086cb0c9baaa">
INSTALL
</a>
</li>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
</a>
</li>
<li class="file-stats">
<a href="#9f621eb5fd3bcb2fa5c7bd228c9b1ad42edc46c8">
NEWS
</a>
</li>
<li class="file-stats">
<a href="#47fc0e419d965659228637bfdaa95e1e9735cad0">
config.mk.in
</a>
</li>
<li class="file-stats">
<a href="#87db583be5c13c1f7b3c958b10e03d67b6a2ca06">
configure.ac
</a>
</li>
<li class="file-stats">
<a href="#b5ff23f6805c7e214151156ce56e18a4ed804010">
consensus.c
</a>
</li>
<li class="file-stats">
<a href="#cb9f132eb7ad36b0e293b828436290909d1203e3">
convert.c
</a>
</li>
<li class="file-stats">
<a href="#ffca347bb50053be91e2750c17cb4f76fe9ab21c">
csq.c
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
debian/compat
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#155bba183d1c525bb29e6a8f0a6f4d5203059fad">
doc/bcftools.1
</a>
</li>
<li class="file-stats">
<a href="#10c81da16b14b79039d2fb8ea89464665683576e">
doc/bcftools.html
</a>
</li>
<li class="file-stats">
<a href="#9a2b5aa2613ebd6ba3159cd62c01d98d9d354e6a">
doc/bcftools.txt
</a>
</li>
<li class="file-stats">
<a href="#3c41fd34a6f6633d79f03c873c93a1b2fe6e12cd">
filter.c
</a>
</li>
<li class="file-stats">
<a href="#774686446cff0a3d3856e367a357a7ad0c0d5fc7">
<span class="new-file">
+
misc/demo-flt.pl
</span>
</a>
</li>
<li class="file-stats">
<a href="#4bb50e4fa4925db6cadff97f6ca30e021ccafd5d">
misc/plot-roh.py
</a>
</li>
<li class="file-stats">
<a href="#c4856142610276c775d66b5001263d80d3f4c337">
misc/run-roh.pl
</a>
</li>
<li class="file-stats">
<a href="#16d330c4f5384ffc5d6fdfee3afd0dfd0f5f47c7">
<span class="new-file">
+
plugins/contrast.c
</span>
</a>
</li>
<li class="file-stats">
<a href="#41a94ba73a57e590aee4c79152b3fd02245cebf2">
plugins/fill-from-fasta.mk
</a>
</li>
<li class="file-stats">
<a href="#76dd62041de9cd9ded861f9bb536c1eefdf67acb">
plugins/fixploidy.c
</a>
</li>
<li class="file-stats">
<a href="#3663acd10445e2dd5e7e52ac192cbef24e3d7e7c">
plugins/prune.c
</a>
</li>
<li class="file-stats">
<a href="#0fc731a88e05a5fa4a1a60976900bf441adfc2e8">
plugins/setGT.c
</a>
</li>
<li class="file-stats">
<a href="#0350c52aed09abe4c72b8c3a7416afb7cd8a42cc">
plugins/setGT.mk
</a>
</li>
<li class="file-stats">
<a href="#784083f2644755468fb5cd7c69cb5b68e6c3d3b9">
regidx.c
</a>
</li>
<li class="file-stats">
<a href="#8b6ca2674e2b3952db0f8bf9c21124153029b2be">
regidx.h
</a>
</li>
<li class="file-stats">
<a href="#be606556473975d2358a49bdf8b429c9b79b3864">
reheader.c
</a>
</li>
<li class="file-stats">
<a href="#338ecc6edece84a3039b43fde442a442354a0db0">
<span class="new-file">
+
test/annotate11.vcf
</span>
</a>
</li>
<li class="file-stats">
<a href="#93207c34cff6fd86b236466b5bca2c1fece4e11f">
<span class="new-file">
+
test/annotate15.out
</span>
</a>
</li>
<li class="file-stats">
<a href="#95c797c973c2766da6f16be090a9c7d3398f9af2">
<span class="new-file">
+
test/annots11.vcf
</span>
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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