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<h3>
Sascha Steinbiss pushed to branch master
at <a href="https://salsa.debian.org/med-team/rna-star">Debian Med / rna-star</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/rna-star/commit/e608df7f92d25ecff87c10b2d139241b23a13504">e608df7f</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2018-04-26T10:11:48+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.6.0a+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rna-star/commit/94ec498c8c670f06d2b344db4ce78fef696b85a3">94ec498c</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2018-04-26T10:11:49+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.6.0a+dfsg'
Update to upstream version '2.6.0a+dfsg'
with Debian dir eb0a234c86f1aaaf9070e093e134dfca1798d3bd</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rna-star/commit/491ce9b1e1ac206a3cf1351c230151113304de1d">491ce9b1</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2018-04-26T10:49:29+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">new upstream, dh 11
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rna-star/commit/8f35b6fb8076bc9c7b69843e7ecdaaac70e3797e">8f35b6fb</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2018-04-26T10:49:44+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">bump Standards-Version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rna-star/commit/9d97db65026fd891c72f81ede297fc882e16848f">9d97db65</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2018-04-26T10:49:54+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">adjust VCS entries
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rna-star/commit/0d6dff14761cbb9add7915529f2c3c610336174a">0d6dff14</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2018-04-26T10:50:13+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">update patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rna-star/commit/6a50985c5572e3698054be5b99e5c75655d78a6c">6a50985c</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2018-04-26T10:50:30+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">update copyright date
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rna-star/commit/2057aed797fca27f950d5193e902f0d7069e3d2f">2057aed7</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2018-04-26T10:50:51+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">remove absent files from Files-Excluded
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/rna-star/commit/58bcf9d3f20545e416d52e58bfaa66922754ab84">58bcf9d3</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2018-04-26T10:52:34+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">update version number in manpage
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#7facec255884dc55d3818e4dfbea89b1bdd7f49e">
CHANGES.md
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#fb1b39277cfb15327cea71551d0bbf7643e216f4">
RELEASEnotes.md
</a>
</li>
<li class="file-stats">
<a href="#fef7079752345049009c955e21b24f87bbf72ad0">
debian/STAR.1
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
debian/compat
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#e15fe6a3aa4284cb8b1685bd77b426cd5fbd7737">
debian/patches/donotuse_own_htslib.patch
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#45ae034d1d71b2d961abb7c91cf3d2f1a02a59c6">
<span class="deleted-file">
−
debian/patches/spelling.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#1d6ebb42152a3125296c8f3df8bc34651da72448">
doc/STARmanual.pdf
</a>
</li>
<li class="file-stats">
<a href="#5a5668ccb427693fe0e7ea2e054229206cb91b0a">
extras/doc-latex/STARmanual.tex
</a>
</li>
<li class="file-stats">
<a href="#dd357fd519066773532862e75ebb9276945c8fe5">
extras/doc-latex/parametersDefault.tex
</a>
</li>
<li class="file-stats">
<a href="#1e5b4c1f1f6aa726b81044bc456a57d6b5ae614b">
source/BAMbinSortByCoordinate.cpp
</a>
</li>
<li class="file-stats">
<a href="#0bfc5dadaef4162ef4b080e49e79924e556dfb93">
source/BAMbinSortByCoordinate.h
</a>
</li>
<li class="file-stats">
<a href="#2ae4914dbcb1efeb17d11c457772c8c2308eb7c1">
source/BAMbinSortUnmapped.cpp
</a>
</li>
<li class="file-stats">
<a href="#836ceb88a596b10c7fb50d8a95ca462dc35804a4">
source/BAMbinSortUnmapped.h
</a>
</li>
<li class="file-stats">
<a href="#05aaea645830f1788b63f5f6c2c90809c8837dee">
source/BAMfunctions.cpp
</a>
</li>
<li class="file-stats">
<a href="#c59c8bb3fa90e4308e2e45749884917ca1d7954d">
source/BAMoutput.cpp
</a>
</li>
<li class="file-stats">
<a href="#d4168ef641bebc13054badb52cf4d24642160607">
source/BAMoutput.h
</a>
</li>
<li class="file-stats">
<a href="#60393688a34fc5924326daa0522f7fbff5ff077a">
source/Chain.cpp
</a>
</li>
<li class="file-stats">
<a href="#65610483a03ecd73b792fab739f9d0457481418f">
source/Chain.h
</a>
</li>
<li class="file-stats">
<a href="#17ef85fa9dc8f604b874c27ab2bc5d31a69f0d6d">
<span class="new-file">
+
source/ChimericAlign.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#a6ffa0e1a002e87767829734d1828c550173c14f">
<span class="new-file">
+
source/ChimericAlign.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#c246a3fe5d9a232194b8e707458c60d63211b000">
<span class="new-file">
+
source/ChimericAlign_chimericJunctionOutput.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#e5c1c806139fc32224b4bec6613de542758c28c3">
<span class="new-file">
+
source/ChimericAlign_chimericStitching.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#3ceff442a9e2d0cccb7493ea77170f2b33f3737a">
<span class="new-file">
+
source/ChimericDetection.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#40b7d10e4645dc6ae30e5830f3b8abe35c537374">
<span class="new-file">
+
source/ChimericDetection.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#e6c66b50a9609f09ee3fe8ac72c75014ae38c1ff">
<span class="new-file">
+
source/ChimericDetection_chimericDetectionMult.cpp
</span>
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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