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<h3>
Andreas Tille pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/freebayes">Debian Med / freebayes</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/freebayes/commit/92a5438a13b1cb4635b759801e6983f77de78d75">92a5438a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-04-26T15:30:40+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.2.0</pre>
</li>
</ul>
<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#43f73f7d53450cb39e21467ef0190febcea5327b">
paper/main.blg
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<li class="file-stats">
<a href="#0a53cd1331172ebc7145845e9edd2c8c26498482">
src/Allele.cpp
</a>
</li>
<li class="file-stats">
<a href="#83d50206f924aa14ae013247fc4b22ac08603cde">
src/Allele.h
</a>
</li>
<li class="file-stats">
<a href="#d28d0b42a3d6377c030b233b5666786610f0c31a">
src/AlleleParser.cpp
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<li class="file-stats">
<a href="#6532bd14206a0c12fa9892041c59ad31412e6d93">
src/AlleleParser.h
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<li class="file-stats">
<a href="#4b567ca405050db542989b34a4df461e88bdfbf6">
src/CNV.cpp
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<li class="file-stats">
<a href="#b67ef0c32df1e9565f6554129a201ad54baa9676">
src/CNV.h
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<li class="file-stats">
<a href="#c394acde60a2ce4f19e09388c0f43b4a5ddd5b5e">
src/DataLikelihood.cpp
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<li class="file-stats">
<a href="#f9698e4507114c506c5ac9e075fc473fb78cc6d3">
src/DataLikelihood.h
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<li class="file-stats">
<a href="#685bfd40973e942a03ac70a62fdc7cd6cbed84de">
src/Fasta.cpp
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<li class="file-stats">
<a href="#db77035e5318bb1216ad059e74133e78b7be41e7">
src/LargeFileSupport.h
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<li class="file-stats">
<a href="#bfcdd62f136117a812c88462fca37481456b118e">
src/LeftAlign.h
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<li class="file-stats">
<a href="#273090286650da5110f5c4e483f2a8d01ea26e64">
<span class="new-file">
+
src/Logging.h
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<li class="file-stats">
<a href="#09a8e11089bd7b184c2ba7778565c1350e1c7e3a">
src/Makefile
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<li class="file-stats">
<a href="#425580f517d621a88f703423f204e7bb1caf4571">
<span class="new-file">
+
src/Makefile.bamtools
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<li class="file-stats">
<a href="#993e5f267bb8dba90c10539f7d5e8ba6f5876409">
src/Parameters.cpp
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<li class="file-stats">
<a href="#fed393b6b80075b7d667185466a4d9098bbea57b">
src/Sample.cpp
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<li class="file-stats">
<a href="#191edb55e0e28840b7c142d1a5817acbdf7db910">
src/Sample.h
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<li class="file-stats">
<a href="#07061a627ba82f45af2654e2d113642d3747ca62">
src/SegfaultHandler.cpp
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<li class="file-stats">
<a href="#ff4525684b1ebc7657263fda589e8f60f65b0ffc">
src/SegfaultHandler.h
</a>
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<li class="file-stats">
<a href="#4f8d96acbe07b2793453a5512f07dd50b6297dfc">
src/alleles.cpp
</a>
</li>
<li class="file-stats">
<a href="#8de15095ae50fbb460653d642e258e9f9631c31f">
src/bamleftalign.cpp
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</li>
<li class="file-stats">
<a href="#0a8324dd44ff9732a3b3dab3603558762809dc6c">
src/freebayes.cpp
</a>
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<li class="file-stats">
<a href="#b05a3cf38e9cb42e639e4c5d9739051852731ff2">
test/t/00_region_and_target_handling.t
</a>
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<li class="file-stats">
<a href="#b512495eaf318bcd937a386870aed8d1e50a1b0d">
test/t/01_call_variants.t
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</li>
<li class="file-stats">
<a href="#4f63c8820033af1d2e88d713cb74af4ab1286c8d">
test/t/02_multi_bam.t
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</li>
<li class="file-stats">
<a href="#8da48f04dcf2c733c3691d0c3e3dd12d38321e7f">
test/t/03_reference_bases.t
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</li>
<li class="file-stats">
<a href="#59c98b6412fc5b041f68655c5d8af12c22635cb9">
<span class="new-file">
+
test/tiny/NA12878.chr22.tiny.hla.bam
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</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
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