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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/fasta3">Debian Med / fasta3</a>
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<h4>
Commits:
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<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/fasta3/commit/efcca6cb1f402a8c3e80dd07dc34fb1e4b346282">efcca6cb</a></strong>
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<span>by Steffen Möller</span>
<i>at 2018-04-27T08:23:43+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Updated control
Set indent nicer - maybe even right.</pre>
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<h4>1 changed file:</h4>
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<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<h4>Changes:</h4>
<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/fasta3/commit/efcca6cb1f402a8c3e80dd07dc34fb1e4b346282#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -25,40 +25,35 @@ Description: tools for searching collections of biological sequences</td>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> members of gene families.</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> * Protein</span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext"> - Protein-protein FASTA</span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="plaintext"> - Protein-protein Smith-Waterman (ssearch)</span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="plaintext"> - Global Protein-protein (Needleman-Wunsch) (ggsearch)</span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="plaintext"> - Global/Local protein-protein (glsearch)</span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="plaintext"> - Protein-protein with unordered peptides (fasts)</span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="plaintext"> - Protein-protein with mixed peptide sequences (fastf)</span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> - Protein-protein FASTA</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> - Protein-protein Smith-Waterman (ssearch)</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> - Global Protein-protein (Needleman-Wunsch) (ggsearch)</span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"> - Global/Local protein-protein (glsearch)</span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> - Protein-protein with unordered peptides (fasts)</span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext"> - Protein-protein with mixed peptide sequences (fastf)</span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> * Nucleotide</span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="plaintext"> - Nucleotide-Nucleotide (DNA/RNA fasta)</span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="plaintext"> - Ordered Nucleotides vs Nucleotide (fastm)</span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="plaintext"> - Un-ordered Nucleotides vs Nucleotide (fasts)</span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"> - Nucleotide-Nucleotide (DNA/RNA fasta)</span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext"> - Ordered Nucleotides vs Nucleotide (fastm)</span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"> - Un-ordered Nucleotides vs Nucleotide (fasts)</span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> * Translated</span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="plaintext"> - Translated DNA (with frameshifts, e.g. ESTs)</span>
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="plaintext"> vs Proteins (fastx/fasty)</span>
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="plaintext"> - Protein vs Translated DNA (with frameshifts)</span>
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<pre style="margin: 0;">-<span id="LC47" class="line" lang="plaintext"> (tfastx/tfasty)</span>
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="plaintext"> - Peptides vs Translated DNA (tfasts)</span>
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41
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext"> - Translated DNA (with frameshifts, e.g. ESTs)</span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext"> vs Proteins (fastx/fasty)</span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"> - Protein vs Translated DNA (with frameshifts)</span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext"> (tfastx/tfasty)</span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"> - Peptides vs Translated DNA (tfasts)</span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> * Statistical Significance</span>
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="plaintext"> - Protein vs Protein shuffle (prss)</span>
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="plaintext"> - DNA vs DNA shuffle (prss)</span>
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="plaintext"> - Translated DNA vs Protein shuffle (prfx)</span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext"> - Protein vs Protein shuffle (prss)</span>
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49
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext"> - DNA vs DNA shuffle (prss)</span>
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50
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="plaintext"> - Translated DNA vs Protein shuffle (prfx)</span>
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51
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> * Local Duplications</span>
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="plaintext"> - Local Protein alignments (lalign)</span>
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="plaintext"> - Plot Protein alignment "dot-plot" (plalign)</span>
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="plaintext"> - Local DNA alignments (lalign)</span>
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<pre style="margin: 0;">-<span id="LC61" class="line" lang="plaintext"> - Plot DNA alignment "dot-plot" (plalign)</span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="plaintext"> - Local Protein alignments (lalign)</span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="plaintext"> - Plot Protein alignment "dot-plot" (plalign)</span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext"> - Local DNA alignments (lalign)</span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext"> - Plot DNA alignment "dot-plot" (plalign)</span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext">Package: fasta3-doc</span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext">Architecture: all</span>
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