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<h3>
Andreas Tille pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/igv">Debian Med / igv</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/commit/d56c16b03dbb415b0dfbd51a38d94763813a83f6">d56c16b0</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-01-22T09:48:28+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.4.6</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/igv/commit/5944e0df78dc34f1b7b3708538788269cef2a45c">5944e0df</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-01-22T10:03:22+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.4.6+dfsg</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
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<li class="file-stats">
<a href="#bdc348bf75801c527f51cdeddc8edf027f7ef35a">
build.xml
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</li>
<li class="file-stats">
<a href="#f1f138d19fd7e4c612995de5356d2ef8e6a7408c">
build_macros.xml
</a>
</li>
<li class="file-stats">
<a href="#277218be8842cb65c489b9409569417fcf521e97">
genomes/db/hg38/hg38.json
</a>
</li>
<li class="file-stats">
<a href="#a487fbda8eb476ccc0cc2c2af26c1ab39e4ce265">
<span class="new-file">
+
genomes/db/ws235/ws235_dataServerRegistry.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#8a2dff7a3742716e0782252fd2c7cbb994773870">
scripts/build-tools.xml
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</li>
<li class="file-stats">
<a href="#7d3fd979b6f92676f462c03745a9050b8be04588">
scripts/igv_build.xml
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</li>
<li class="file-stats">
<a href="#c06f6d1b32cf57f98efc7d0fc3828621ff0d92db">
src/org/broad/igv/batch/CommandExecutor.java
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<li class="file-stats">
<a href="#faef8f69e84b4e990b58f64aa354837de9f616c2">
src/org/broad/igv/feature/genome/Genome.java
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<li class="file-stats">
<a href="#4413ab5ecd5d958aeed28b012ccf571d46e2e36d">
src/org/broad/igv/feature/genome/GenomeDescriptor.java
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</li>
<li class="file-stats">
<a href="#d2a5017d2e3aad882764f79d9b0aa68661d16cb2">
src/org/broad/igv/feature/genome/GenomeManager.java
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</li>
<li class="file-stats">
<a href="#047cdd29ad938a11dc23d4b2a9630ca708f7074d">
src/org/broad/igv/feature/genome/GenomeZipDescriptor.java
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<li class="file-stats">
<a href="#13b5f5bae2dc3e983ead54b05ce99860275c038f">
src/org/broad/igv/feature/genome/fasta/FastaBlockCompressedSequence.java
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<li class="file-stats">
<a href="#1676b48b1c819cd4a9592a762c2c9fc9106f1d11">
src/org/broad/igv/feature/genome/fasta/FastaIndexedSequence.java
</a>
</li>
<li class="file-stats">
<a href="#727d684744d4c275215385dbdfe2ea92c59b2d39">
src/org/broad/igv/ga4gh/OAuthUtils.java
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<li class="file-stats">
<a href="#10ac7b50568ed839198533051fa5e4e7ca5e4c03">
src/org/broad/igv/prefs/Constants.java
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</li>
<li class="file-stats">
<a href="#ad6ea21423f28fff7a0288fbd44b5d588fbc5fea">
src/org/broad/igv/prefs/PreferencesManager.java
</a>
</li>
<li class="file-stats">
<a href="#8dbf5767ce2bc091cc988d3b85db00ca0d93c694">
src/org/broad/igv/prefs/preferences.tab
</a>
</li>
<li class="file-stats">
<a href="#321d2a3c274ea455311ef26fa384f34bc27f1095">
src/org/broad/igv/sam/AlignmentDataManager.java
</a>
</li>
<li class="file-stats">
<a href="#dc21bfc3a198fb91b293f08f5f1515b0a2e21cda">
src/org/broad/igv/sam/AlignmentTileLoader.java
</a>
</li>
<li class="file-stats">
<a href="#80df64273e1aaa82160cae35432d6835efb170d8">
src/org/broad/igv/sam/AlignmentTrack.java
</a>
</li>
<li class="file-stats">
<a href="#8e494018e9186d50648dac03ac0b4fc2be5dc330">
src/org/broad/igv/sam/BaseAlignmentCounts.java
</a>
</li>
<li class="file-stats">
<a href="#3e7eb1616fd993c183c6c741713740cf1d9e0273">
src/org/broad/igv/sam/CoverageTrack.java
</a>
</li>
<li class="file-stats">
<a href="#7db5c2a3537d5950a268b02cfe0fc53361bcdf95">
src/org/broad/igv/sam/InsertionManager.java
</a>
</li>
<li class="file-stats">
<a href="#89d9db9f4645628dbe824774aac23f134467444d">
src/org/broad/igv/sam/ReadStats.java
</a>
</li>
<li class="file-stats">
<a href="#557470750eb4c51b0b5fd001662161fc8ddc849b">
src/org/broad/igv/sam/SpliceJunctionTrack.java
</a>
</li>
<li class="file-stats">
<a href="#7cf4ec704d07e2275af20b30f40bcb5acc5f913e">
<span class="new-file">
+
src/org/broad/igv/sam/mutreview/BaseCounts.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#a0e77fb3748d442c810ddc7ccf005667e228d7c6">
src/org/broad/igv/google/GoogleCloudStorageHelper.java
→
src/org/broad/igv/sam/mutreview/GoogleCloudStorageHelper.java
</a>
</li>
<li class="file-stats">
<a href="#565bdcb2f083cb5dea74e74abf8a7ad7ae37388b">
<span class="new-file">
+
src/org/broad/igv/sam/mutreview/VariantReview.fxml
</span>
</a>
</li>
<li class="file-stats">
<a href="#8c1759e942ef96dbe11aec6e4a714253cd463471">
<span class="new-file">
+
src/org/broad/igv/sam/mutreview/VariantReviewAction.java
</span>
</a>
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<h5>The diff was not included because it is too large.</h5>
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