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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/python-biopython">Debian Med / python-biopython</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-biopython/commit/5e0cc855b3db23f0e278a4f0542920bee365eb23">5e0cc855</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-05-02T15:59:16+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix encoding issue
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-biopython/commit/1c75d7f83cb549ad3f5cce5f7c68b84bf790b63e">1c75d7f8</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-05-02T15:59:16+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix Python version in Suggestes
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-biopython/commit/036860a59a76d95e214e2a991ad3b21ef9743df3">036860a5</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-05-02T15:59:16+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Make sure Doc dir ends up in python-biopython-doc package
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-biopython/commit/eb139bdb4e660bf3a282f68bfac696189a43c5cb">eb139bdb</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-05-02T15:59:16+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Drop python3-reportlab from Suggests which is also in Depends
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-biopython/commit/a7c393ae3f9361c484fddad795ae1a2039366ada">a7c393ae</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-05-02T15:59:16+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
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<h4>7 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#3a8581a7bac62b2d01231dfd7563b1eed1d511f5">
<span class="new-file">
+
debian/patches/fix_encoding.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#a818255fc94deb209e6ef558825f1d08d0703126">
<span class="new-file">
+
debian/patches/more_general_utf-8_reader.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#04f56d98851e768ba0489a0c14dec12f19aad10f">
debian/python-biopython-doc.docs
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</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/python-biopython/compare/fb1a64085106c49dbf73eddfe9e8066a35c84dcc...a7c393ae3f9361c484fddad795ae1a2039366ada#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="mosel"><span class="n" style="color: #333;">python</span><span class="p">-</span><span class="n" style="color: #333;">biopython</span> <span class="p">(</span><span class="m" style="color: #099;">1.71</span><span class="p">+</span><span class="n" style="color: #333;">dfsg</span><span class="p">-</span><span class="m" style="color: #099;">1</span><span class="p">)</span> <span class="n" style="color: #333;"><span class="idiff left right">UNRELEASED</span></span><span class="p">;</span> <span class="n" style="color: #333;">urgency</span><span class="p">=</span><span class="n" style="color: #333;">medium</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="mosel"><span class="n" style="color: #333;">python</span><span class="p">-</span><span class="n" style="color: #333;">biopython</span> <span class="p">(</span><span class="m" style="color: #099;">1.71</span><span class="p">+</span><span class="n" style="color: #333;">dfsg</span><span class="p">-</span><span class="m" style="color: #099;">1</span><span class="p">)</span> <span class="n" style="color: #333;"><span class="idiff left right">unstable</span></span><span class="p">;</span> <span class="n" style="color: #333;">urgency</span><span class="p">=</span><span class="n" style="color: #333;">medium</span></span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2" class="line" lang="mosel"></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">New</span> <span class="n" style="color: #333;">upstream</span> <span class="k" style="font-weight: 600;">version</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4
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<td class="diff-line-num new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC4" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Standards</span><span class="p">-</span><span class="k" style="font-weight: 600;">Version</span><span class="p">:</span> <span class="m" style="color: #099;">4.1.3</span></span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6,8 +6,10 @@ python-biopython (1.71+dfsg-1) UNRELEASED; urgency=medium</td>
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6
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<td class="diff-line-num new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">debhelper</span> <span class="m" style="color: #099;">11</span></span>
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<td class="diff-line-num old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC7" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Add</span> <span class="n" style="color: #333;">dh</span><span class="p">-</span><span class="n" style="color: #333;">python</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">Build</span><span class="p">-</span><span class="n" style="color: #333;">Depends</span> <span class="n" style="color: #333;">since</span> <span class="n" style="color: #333;">this</span> <span class="n" style="color: #333;">will</span> <span class="n" style="color: #333;">be</span> <span class="n" style="color: #333;">dropped</span> <span class="k" style="font-weight: 600;">from</span> <span class="n" style="color: #333;">python3</span><span class="s1" style="color: #d14;">'s</span></span>
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<td class="diff-line-num old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="mosel"><span class="s1" style="color: #d14;"> Depends soon</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="mosel"><span class="s1" style="color: #d14;"> * Fix Python version in Suggestes</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="mosel"><span class="s1" style="color: #d14;"> * Make sure Doc dir ends up in python-biopython-doc package</span></span>
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<td class="diff-line-num old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="mosel"></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="mosel"><span class="s1" style="color: #d14;"> -- Andreas Tille <tille@debian.org> <span class="idiff left right">Thu, 05 Apr 2018 15:14:51</span> +0200</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="mosel"><span class="s1" style="color: #d14;"> -- Andreas Tille <tille@debian.org> <span class="idiff left right">Fri, 06 Apr 2018 09:03:06</span> +0200</span></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="mosel"><span class="s1" style="color: #d14;">python-biopython (1.70+dfsg-4) unstable; urgency=medium</span></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="mosel"></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="117" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -117,7 +117,6 @@ Depends: ${python3:Depends},</td>
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="plaintext">Recommends: python-biopython-doc (= ${source:Version}),</span>
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<pre style="margin: 0;"> <span id="LC118" class="line" lang="plaintext"> ncbi-blast+</span>
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<pre style="margin: 0;"> <span id="LC119" class="line" lang="plaintext">Suggests: python3-tk,</span>
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<pre style="margin: 0;">-<span id="LC120" class="line" lang="plaintext"> python-reportlab,</span>
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<pre style="margin: 0;"> <span id="LC120" class="line" lang="plaintext"> bwa [any-amd64],</span>
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="plaintext"> clustalo,</span>
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="plaintext"> clustalw,</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -131,7 +130,7 @@ Suggests: python3-tk,</td>
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130
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<pre style="margin: 0;"> <span id="LC130" class="line" lang="plaintext"> phyml [any-amd64 any-i386 arm64 armhf sparc64],</span>
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<pre style="margin: 0;"> <span id="LC131" class="line" lang="plaintext"> prank,</span>
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<pre style="margin: 0;"> <span id="LC132" class="line" lang="plaintext"> probcons,</span>
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<pre style="margin: 0;">-<span id="LC134" class="line" lang="plaintext"> python-mysqldb,</span>
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="plaintext"> python<span class="idiff left right">3</span>-mysqldb,</span>
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="plaintext"> python3-matplotlib,</span>
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<pre style="margin: 0;"> <span id="LC135" class="line" lang="plaintext"> python3-numpy,</span>
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="plaintext"> python3-pil,</span>
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<li id="3a8581a7bac62b2d01231dfd7563b1eed1d511f5">
<a href="https://salsa.debian.org/med-team/python-biopython/compare/fb1a64085106c49dbf73eddfe9e8066a35c84dcc...a7c393ae3f9361c484fddad795ae1a2039366ada#3a8581a7bac62b2d01231dfd7563b1eed1d511f5"><strong>debian/patches/fix_encoding.patch</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff">Author: Klaus Zimmermann <klaus_zimmermann@gmx.de></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff">Last-Update: Thu, 5 Apr 2018 16:39:47 +0200</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff">Origin: https://lists.debian.org/debian-python/2018/04/msg00025.html</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff">Description: Fix encoding issue in README.rst</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/README.rst</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/README.rst</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -168,12 +168,12 @@ deprecated).</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> pacakge).</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> - Appropriate C compiler for your version of Python, for example GCC on Linux,</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- MSVC on Windows. For Mac OS X, or as it is now branded, macOS, use Apple’s</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ MSVC on Windows. For Mac OS X, or as it is now branded, macOS, use Apple's</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> command line tools, which can be installed with the terminal command::</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> xcode-select --install</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- This will offer to install Apple’s XCode development suite - you can, but it</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ This will offer to install Apple's XCode development suite - you can, but it</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> is not needed and takes a lot of disk space.</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"> - NumPy, see http://www.numpy.org - this package is used in ``Bio.Cluster``,</span></pre>
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<li id="a818255fc94deb209e6ef558825f1d08d0703126">
<a href="https://salsa.debian.org/med-team/python-biopython/compare/fb1a64085106c49dbf73eddfe9e8066a35c84dcc...a7c393ae3f9361c484fddad795ae1a2039366ada#a818255fc94deb209e6ef558825f1d08d0703126"><strong>debian/patches/more_general_utf-8_reader.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff">Author: Piotr Ożarowski <piotr@debian.org></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff">Last-Update: Thu, 5 Apr 2018 16:35:44 +0200</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff">Origin: https://lists.debian.org/debian-python/2018/04/msg00023.html</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff">Description: In case there might be some more encoding issues that</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"> are not yet fixed by fix_encoding.patch</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/setup.py</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/setup.py</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -431,8 +431,8 @@ for line in open('Bio/__init__.py'):</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> # We now load in our reStructuredText README.rst file to pass</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> # explicitly in the metadata since at time of writing PyPI</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> # did not do this for us:</span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-with open("README.rst") as handle:</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- readme_rst = handle.read()</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+with open("README.rst", 'rb') as handle:</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ readme_rst = handle.read().decode('UTF-8')</span></span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> </span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> setup(name='biopython',</span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> version=__version__,</span></pre>
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<a href="https://salsa.debian.org/med-team/python-biopython/compare/fb1a64085106c49dbf73eddfe9e8066a35c84dcc...a7c393ae3f9361c484fddad795ae1a2039366ada#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">remove_mathml-qname.patch</span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">privacy_breach.patch</span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">fix_encoding.patch</span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">more_general_utf-8_reader.patch</span></pre>
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<a href="https://salsa.debian.org/med-team/python-biopython/compare/fb1a64085106c49dbf73eddfe9e8066a35c84dcc...a7c393ae3f9361c484fddad795ae1a2039366ada#04f56d98851e768ba0489a0c14dec12f19aad10f"><strong>debian/python-biopython-doc.docs</strong></a>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Doc<span class="idiff left right">/</span></span>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Doc</span>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">debian/README.test</span>
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3
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">debian/tests/run-unit-test</span>
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4
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">debian/Tests_fixme</span></pre>
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<a href="https://salsa.debian.org/med-team/python-biopython/compare/fb1a64085106c49dbf73eddfe9e8066a35c84dcc...a7c393ae3f9361c484fddad795ae1a2039366ada#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="122" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="122" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -122,12 +122,16 @@ else</td>
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122
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122
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="plaintext">endif</span>
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123
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123
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="plaintext"></span>
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124
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<pre style="margin: 0;"> <span id="LC124" class="line" lang="plaintext">override_dh_installdocs-indep:</span>
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125
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<pre style="margin: 0;">-<span id="LC125" class="line" lang="plaintext"> dh_installdocs</span>
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125
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="plaintext"> dh_installdocs<span class="idiff left right"> -i</span></span>
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<td class="diff-line-num old_line" data-linenumber="126" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
126
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<td class="diff-line-num new_line" data-linenumber="126" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
126
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="plaintext"> find debian -name __pycache__ -type d | xargs rm -rf</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="127" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
127
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<td class="diff-line-num new_line" data-linenumber="127" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
127
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="plaintext"> find debian -name example.fastq.gz</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="128" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
128
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<td class="diff-line-num new_line" data-linenumber="128" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
128
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<pre style="margin: 0;"> <span id="LC128" class="line" lang="plaintext"> # dh_installdocs seems to refuse copying zero length files (for instance Tests/Blast/tab_2226_tblastn_002.txt) but these are needed for the tests as well</span>
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<td class="diff-line-num old_line" data-linenumber="129" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
129
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<td class="diff-line-num new_line" data-linenumber="129" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
129
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC129" class="line" lang="plaintext"> cp -a debian/tmp_tests/* $(CURDIR)/debian/python-biopython-doc/usr/share/doc/python-biopython-doc/</span>
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<td class="diff-line-num old_line" data-linenumber="130" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
130
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<td class="diff-line-num new_line" data-linenumber="130" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
130
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<pre style="margin: 0;"> <span id="LC130" class="line" lang="plaintext"> find debian -name .cvsignore -delete</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="131" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="131" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
131
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="plaintext"> # no idea why Doc dir ends up in /usr/share/doc/python-biopython since biopython 1.71 - just move it into right place</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="131" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="132" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
132
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="plaintext"> if [ -d debian/python-biopython-doc/usr/share/doc/python-biopython/Doc ] ; then \</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="131" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="133" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
133
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="plaintext"> mv debian/python-biopython-doc/usr/share/doc/python-biopython/Doc debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc ; \</span>
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<td class="diff-line-num new old_line" data-linenumber="131" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="134" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
134
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<pre style="margin: 0;">+<span id="LC134" class="line" lang="plaintext"> fi</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="131" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
131
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<td class="diff-line-num new_line" data-linenumber="135" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
135
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC135" class="line" lang="plaintext"> cd debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc && make clean</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="132" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
132
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<td class="diff-line-num new_line" data-linenumber="136" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
136
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC136" class="line" lang="plaintext"> find debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc -name Makefile -delete</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="133" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
133
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<td class="diff-line-num new_line" data-linenumber="137" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
137
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC137" class="line" lang="plaintext"> find debian/python-biopython-doc/usr/share/doc/python-biopython-doc/Doc -name "*.aux" -delete</span>
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