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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/manta">Debian Med / manta</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/manta/commit/830e6595629d515292314741f714570fe930a36f">830e6595</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-05-03T15:27:36+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.4.0+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/manta/commit/22f7283bc6b57cee39b37a221df4048f1d48277c">22f7283b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-05-03T15:27:38+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.4.0+dfsg'
Update to upstream version '1.4.0+dfsg'
with Debian dir 34791426c56cf9eb2fa6ed435e2692cd267a9e18</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/manta/commit/9be73e5d91e35d46bcc019878f845792886fdc10">9be73e5d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-05-03T15:27:38+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/manta/commit/3317aaaf750a2af84c402179193863f81c7c5002">3317aaaf</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-05-03T15:27:39+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debhelper 11
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/manta/commit/4c8d38bdf62daf9698a6d7905c3f0a829394364c">4c8d38bd</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-05-03T15:28:58+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Point Vcs fields to salsa.debian.org
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/manta/commit/777fc9f0e25dd1120de316d00f1e9681c5ba187d">777fc9f0</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-05-03T15:28:59+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.1.4
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/manta/commit/2ba51789b7764d92affd0862e1814bac553b380b">2ba51789</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-05-03T15:43:10+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update pyflow version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/manta/commit/0741f47b420539bdb06d589ffc84e9f114145d00">0741f47b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-05-03T15:45:24+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">NO need fo zlib patch any more
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/manta/commit/d1616710fb66cbeb7bd56acca2a1e8780ce6d5b3">d1616710</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-05-03T15:49:34+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix htslib check
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/manta/commit/3f05c9bd0bb3c3e975b17e4893f08121e198c8c5">3f05c9bd</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-05-03T15:50:33+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Restore original file which was accidentally commited with a patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/manta/commit/a2181992d339209ada597aeb4cb7b6a40355672d">a2181992</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-05-03T15:53:02+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/manta/commit/666ee2953f4b5fb30fa4b1a2a80a6b1501bb2fe4">666ee295</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-05-03T15:54:18+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">fix htslib patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/manta/commit/d93adda98109aa3fc763d1b54c11fdb784cf4707">d93adda9</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-05-03T15:54:59+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh other patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/manta/commit/bf4938c3bb87176bdbb0699ba635e4037ae2ac03">bf4938c3</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-05-03T15:59:03+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Somhow I have no luck with these patches ... grrrr
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/manta/commit/0509a23e5a070bff85249455fe921ed630276900">0509a23e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-05-03T16:05:57+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Hopefully now really got patches right
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#ab09011fa121d0a2bb9fa4ca76094f2482b902b7">
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+
CHANGELOG.md
</span>
</a>
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<li class="file-stats">
<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
</a>
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<li class="file-stats">
<a href="#64ecc0f26b44f4b9d3445be30fc84c78bcbb017e">
COPYRIGHT.txt
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<li class="file-stats">
<a href="#57bf262130f956caf76c405086f0815caf4e0a89">
<span class="deleted-file">
−
ChangeLog.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#09be8533ff0a6ee5d577f971145ed449399fcda4">
configure
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
debian/compat
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#1ff5640b89760bdec2d0b3c25324e561fcfcbe52">
debian/patches/config_path.patch
</a>
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<li class="file-stats">
<a href="#3b777c3f41f738d812f5c6ef41b995d27f834a76">
debian/patches/force_debian_pathes.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#e9ffd79035f20df75689c726e3780374ee2ad4f4">
debian/patches/use_debian_packaged_htslib.patch
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<li class="file-stats">
<a href="#f352f70c2eb5edf51fc9daa65d96bbafa5cbfe10">
debian/patches/use_debian_packaged_pyflow.patch
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<li class="file-stats">
<a href="#5d35ea21f1900ff480a0e9f143d795239c2560e4">
debian/patches/use_debian_packaged_samtools.patch
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<li class="file-stats">
<a href="#966bb4d5dd1abaf8ad19f277388bf088d452d07d">
<span class="deleted-file">
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debian/patches/use_debian_packaged_zlib.patch
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<li class="file-stats">
<a href="#9f7cbce127b94a94ee14460050fbff2ce58417d0">
docs/README.md
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<a href="#38f19af7ed107ef74ba38b780659ded160c3be4f">
docs/developerGuide/README.md
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<li class="file-stats">
<a href="#b7164b1fd9d31d571c95a253302eaa6a37289cea">
docs/methods/primary/makepdf.bash
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<a href="#88d0b22d8f3bc8a33107c70172be0799d3602d5b">
docs/methods/primary/methods.bib
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<li class="file-stats">
<a href="#7e4345e5dde1c55745d43779ce7227d543f513f5">
docs/methods/primary/methods.tex
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<a href="#66db6f171dd6eb0b141be872538092bd510e596c">
docs/userGuide/README.md
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<a href="#ff605b2487e0da30a8ac57bec7c024fe76a71c92">
docs/userGuide/installation.md
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<a href="#99fed6930dcbe9d4ee8fecef75d6ac99b2e11a33">
redist/CMakeLists.txt
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<a href="#2020ecf7bc4c4e3a0a76fc3248171dbbc97e9780">
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redist/README.md
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redist/README.txt
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<li class="file-stats">
<a href="#631c8d07f5ea23b9a9f6c57f5389dfcf94bc33b7">
src/CMakeLists.txt
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<li class="file-stats">
<a href="#dd10d67cd632572e0f140660a798c5597658c622">
src/c++/CMakeLists.txt
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<li class="file-stats">
<a href="#f30cb041cd3fbf6ef52d321ec7476eae933903b5">
src/c++/Doxyfile.in
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<a href="#21393f595f26242d9076af2e2504856aff5007b4">
src/c++/bin/CMakeLists.txt
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</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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