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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/samtools">Debian Med / samtools</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/samtools/commit/1452acedf9d260867ea7da5491f16e358201436c">1452aced</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-05-03T12:02:04+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.8</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/samtools/commit/cf330a235e2202eed62dd389bda974815e7dd858">cf330a23</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-05-03T12:02:20+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.8'
Update to upstream version '1.8'
with Debian dir c1791e4b4b846627ac181c5e25a26f548469b133</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/samtools/commit/2cb67ab6de2de68ebfcab02b10dbc447d9aa342c">2cb67ab6</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-05-03T12:02:20+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/samtools/commit/0ccaa5aedbd5e2f22f91e60139139d6dbfcf2ad8">0ccaa5ae</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-05-03T12:02:23+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Point Vcs fields to salsa.debian.org
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/samtools/commit/cb2185b40758dc938c626c5143469ad5f734a5db">cb2185b4</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-05-03T12:02:24+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.1.4
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/samtools/commit/5ff7c75e47964b4ec37adaaef026409f2063a84b">5ff7c75e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-05-03T13:08:38+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/samtools/commit/e5d95bc9eed9a129dfb582b8b2cea30636589ebd">e5d95bc9</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-05-03T13:15:14+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">hardening=+all
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/samtools/commit/e2e77e3d04c3a735b74c8d9484c9f9739b7612f8">e2e77e3d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-05-03T13:16:19+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Bump versioned Build-Depends: libhts-dev (>= 1.8)
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/samtools/commit/1c37793dacc279b726fc5be2e44a888a3943a41f">1c37793d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-05-03T13:21:28+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to experimental
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#961d2007ddaacf60fb7db9dd5246cf601bc343ec">
<span class="deleted-file">
−
.appveyor.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#9f621eb5fd3bcb2fa5c7bd228c9b1ad42edc46c8">
NEWS
</a>
</li>
<li class="file-stats">
<a href="#69e27356ef629022720d868ab0c0e3394775b6c1">
README
</a>
</li>
<li class="file-stats">
<a href="#1bb0ee14ea54633c87c40fe410d73790a19569d2">
bam.h
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</li>
<li class="file-stats">
<a href="#47e9e5b41a99db7f29a9c389319288b5be3dd44d">
bam2depth.c
</a>
</li>
<li class="file-stats">
<a href="#a795d2efa11b7c958434d4db488733d129354980">
bam_addrprg.c
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<li class="file-stats">
<a href="#89a03e702f4bc3e36cdfde2781a3be558535682e">
bam_markdup.c
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<li class="file-stats">
<a href="#d4bc32e2570b26508c2d81d71d23edbaaec16180">
bam_mate.c
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<a href="#4fc4365483305125a81f12902c48a4deca801439">
bam_md.c
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<li class="file-stats">
<a href="#4554809383bbbc3e2470c76b4bfd91881ede7125">
bam_sort.c
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<a href="#626f775b286121e6af2d42eb75cd46e1cee23a5f">
bamshuf.c
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<a href="#1a48ab55cdba02e81517c3347c3e68888e1d1875">
debian/patches/sort-tests-memory-limit.patch
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<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<li class="file-stats">
<a href="#001a99e08982475255b42e38ac7409744c364808">
misc/wgsim.1
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<a href="#776f7eddceb103540612de0a0e2d6ceadc0bb93b">
sam_view.c
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<a href="#6136134c74ebcf09a5b07448867f77a8b228479f">
samtools.1
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<li class="file-stats">
<a href="#a4541c3f0bf2cdd6ed5f001e8e384a31562cbb8f">
stats.c
</a>
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<li class="file-stats">
<a href="#2856fabeeec49adf974fac23fe007ffe51702c39">
<span class="new-file">
+
test/collate/collate.expected.sam
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<li class="file-stats">
<a href="#537667f1cc1b378be040e420bbde516ee0ff8590">
<span class="deleted-file">
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test/merge/2.merge.expected.bam
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<li class="file-stats">
<a href="#ef08cefb4990e00b3166825c65230482b3406c92">
<span class="new-file">
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<li class="file-stats">
<a href="#ebc0e95ca3eaafbafce18f3f9e298c0720f595b8">
<span class="deleted-file">
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test/merge/3.merge.expected.bam
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<li class="file-stats">
<a href="#5bc1acda73a78430e0e609f94e2c79e6d3299615">
<span class="new-file">
+
test/merge/3.merge.expected.sam
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<li class="file-stats">
<a href="#a16948ac477971afe8f8ae338ad851c308d09f44">
<span class="deleted-file">
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test/merge/4.merge.expected.bam
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<li class="file-stats">
<a href="#642e8554023201d63cd81e7de5002a0809071cbe">
<span class="new-file">
+
test/merge/4.merge.expected.sam
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<li class="file-stats">
<a href="#e84afa3932135e9a362fa33059d93fd8f2c2efcc">
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test/merge/5.merge.expected.bam
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<li class="file-stats">
<a href="#db4f542158aa133a7a4b18a406fcb0331553cd94">
test/merge/5.merge.expected.sam
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<li class="file-stats">
<a href="#bcba10f9500a1f21b30702e314bcbbd9dd6aed16">
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test/merge/6.merge.expected.bam
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<li class="file-stats">
<a href="#9d70f8ab7a894b8b05568b85f10e4653ab8890ab">
<span class="new-file">
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test/merge/6.merge.expected.sam
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</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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