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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/snap">Debian Med / snap</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/snap/commit/17eb8ac6775472ba98dce7c9ec2883a2964af26e">17eb8ac6</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-05-08T07:20:35+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debhelper 11
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snap/commit/1ccfbc9844e1220541a6d9aacc9bbd6851e2266d">1ccfbc98</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-05-08T07:20:38+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Point Vcs fields to salsa.debian.org
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snap/commit/414805849e2567fe9d5413c7fc34a4d31d998c21">41480584</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-05-08T07:20:38+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.1.4
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/snap/commit/a6e4ad8e10953a771badc5b0d983662345b1f096">a6e4ad8e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-05-08T07:27:03+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix spelling
</pre>
</li>
</ul>
<h4>6 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
debian/compat
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#b6d185566548cafbc08fe64d398928ddf91cc9c5">
debian/patches/replace_itoa_with_broken_indentation.patch
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#45ae034d1d71b2d961abb7c91cf3d2f1a02a59c6">
<span class="new-file">
+
debian/patches/spelling.patch
</span>
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/snap/compare/9b85c01b00cada8e34667424c5d3f3231ab6942e...a6e4ad8e10953a771badc5b0d983662345b1f096#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,6 +2,10 @@ snap (2013-11-29-9) UNRELEASED; urgency=medium</td>
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2
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<td class="diff-line-num new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2" class="line" lang="mosel"></span>
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<td class="diff-line-num old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3
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<td class="diff-line-num new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Enlarge</span> <span class="n" style="color: #333;">too</span> <span class="n" style="color: #333;">short</span> <span class="n" style="color: #333;">target</span> <span class="k" style="font-weight: 600;">string</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">sprintf</span></span>
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<td class="diff-line-num old_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4
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<td class="diff-line-num new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC4" class="line" lang="mosel"> <span class="n" style="color: #333;">Closes</span><span class="p">:</span> <span class="p">#</span><span class="m" style="color: #099;">897864</span></span>
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
5
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC5" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">debhelper</span> <span class="m" style="color: #099;">11</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC6" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Point</span> <span class="n" style="color: #333;">Vcs</span> <span class="n" style="color: #333;">fields</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
7
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC7" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Standards</span><span class="p">-</span><span class="k" style="font-weight: 600;">Version</span><span class="p">:</span> <span class="m" style="color: #099;">4.1.4</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">spelling</span></span>
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5
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<td class="diff-line-num new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC9" class="line" lang="mosel"></span>
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<td class="diff-line-num old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="mosel"> <span class="p">--</span> <span class="n" style="color: #333;">Andreas</span> <span class="n" style="color: #333;">Tille</span> <span class="p"><</span><span class="n" style="color: #333;">tille</span><span class="p">@</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">></span> <span class="n" style="color: #333;">Mon</span><span class="p">,</span> <span class="m" style="color: #099;">07</span> <span class="n" style="color: #333;">May</span> <span class="m" style="color: #099;">2018</span> <span class="m" style="color: #099;">23</span><span class="p">:</span><span class="m" style="color: #099;">38</span><span class="p">:</span><span class="m" style="color: #099;">54</span> <span class="p">+</span><span class="m" style="color: #099;">0200</span></span>
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="mosel"></span>
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<li id="78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<a href="https://salsa.debian.org/med-team/snap/compare/9b85c01b00cada8e34667424c5d3f3231ab6942e...a6e4ad8e10953a771badc5b0d983662345b1f096#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4"><strong>debian/compat</strong></a>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">1<span class="idiff left right">0</span></span></pre>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">1<span class="idiff left right">1</span></span></pre>
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<a href="https://salsa.debian.org/med-team/snap/compare/9b85c01b00cada8e34667424c5d3f3231ab6942e...a6e4ad8e10953a771badc5b0d983662345b1f096#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4,11 +4,11 @@ Uploaders: Steffen Moeller <moeller@debian.org>,</td>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> Andreas Tille <tille@debian.org></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper (>= 1<span class="idiff left right">0</span>),</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper (>= 1<span class="idiff left right">1~</span>),</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> help2man</span>
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9
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">Standards-Version: 4.1.<span class="idiff left right">2</span></span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext">Vcs-Browser: https://<span class="idiff left right">anonscm.debian.org/cgit/debian-med/snap.git</span></span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext">Vcs-Git: https://<span class="idiff left right">anonscm.debian.org/git/debian-med</span>/snap.git</span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">Standards-Version: 4.1.<span class="idiff left right">4</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">Vcs-Browser: https://<span class="idiff left right">salsa.debian.org/med-team/snap</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">Vcs-Git: https://<span class="idiff left right">salsa.debian.org/med-team</span>/snap.git</span>
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12
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">Homepage: https://www.psc.edu/index.php/user-resources/software/snap</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">Package: snap</span>
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<li id="b6d185566548cafbc08fe64d398928ddf91cc9c5">
<a href="https://salsa.debian.org/med-team/snap/compare/9b85c01b00cada8e34667424c5d3f3231ab6942e...a6e4ad8e10953a771badc5b0d983662345b1f096#b6d185566548cafbc08fe64d398928ddf91cc9c5"><strong>debian/patches/replace_itoa_with_broken_indentation.patch</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="diff">Author: Andreas Tille <tille@debian.org></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="diff">Last-Update: Wed, 24 Aug 2016 10:43:36 +0200</span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="diff">Description: itoa implementation had broken identation - use</span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff">Description: itoa implementation had broken i<span class="idiff left right">n</span>dentation - use</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="diff"> sprintf instead</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/Zoe/zoeTools.c</span></span>
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<a href="https://salsa.debian.org/med-team/snap/compare/9b85c01b00cada8e34667424c5d3f3231ab6942e...a6e4ad8e10953a771badc5b0d983662345b1f096#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,3 +5,4 @@ use-CC.patch</td>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">replace_itoa_with_broken_indentation.patch</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">fix_missing_braces_in_if_statements.patch</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">gcc-8.patch</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">spelling.patch</span></pre>
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<a href="https://salsa.debian.org/med-team/snap/compare/9b85c01b00cada8e34667424c5d3f3231ab6942e...a6e4ad8e10953a771badc5b0d983662345b1f096#45ae034d1d71b2d961abb7c91cf3d2f1a02a59c6"><strong>debian/patches/spelling.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff">Description: Fix spelling</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff">Author: Andreas Tille <tille@debian.org></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff">Last-Update: Mon, 07 May 2018 23:38:54 +0200</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/Zoe/zoePhasePref.c</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/Zoe/zoePhasePref.c</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -80,7 +80,7 @@ score_t zoeScorePhase (zoePhasePref pp,</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> case Int0: return pp->score[Ei_I0];</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> case Int1: case Int1T: return pp->score[Ei_I1];</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> case Int2: case Int2TA: case Int2TG: return pp->score[Ei_I2];</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- default: zoeExit("zoeScorePhase does not allow to %d", to);</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ default: zoeExit("zoeScorePhase does not allow one to %d", to);</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> }</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> case Exon:</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> switch (inc5) {</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -111,19 +111,19 @@ score_t zoeScorePhase (zoePhasePref pp,</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> switch (to) {</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> case Exon: return pp->score[I0_E0];</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> case Eterm: return pp->score[I0_Et];</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- default: zoeExit("zoeScorePhase does not allow to %d", to);</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ default: zoeExit("zoeScorePhase does not allow one to %d", to);</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"> }</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"> case Int1: case Int1T:</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"> switch (to) {</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"> case Exon: return pp->score[I1_E1];</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"> case Eterm: return pp->score[I1_Et];</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- default: zoeExit("zoeScorePhase does not allow to %d", to);</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ default: zoeExit("zoeScorePhase does not allow one to %d", to);</span></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"> }</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"> case Int2: case Int2TA: case Int2TG:</span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff"> switch (to) {</span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="diff"> case Exon: return pp->score[I2_E2];</span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="diff"> case Eterm: return pp->score[I2_Et];</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- default: zoeExit("zoeScorePhase does not allow to %d", to);</span></span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ default: zoeExit("zoeScorePhase does not allow one to %d", to);</span></span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="diff"> }</span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="diff"> default: return 0;</span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="diff"> }</span></pre>
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