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<h3>
Afif Elghraoui pushed to branch master
at <a href="https://salsa.debian.org/med-team/pbgenomicconsensus">Debian Med / pbgenomicconsensus</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbgenomicconsensus/commit/1211bfa6ff11551a8bae5f0fea8cda0173409e7a">1211bfa6</a></strong>
<div>
<span>by Afif Elghraoui</span>
<i>at 2018-05-11T00:57:27-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.2.2</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbgenomicconsensus/commit/f95dec6e7a790d789dd66aa62975064fbcc09d7b">f95dec6e</a></strong>
<div>
<span>by Afif Elghraoui</span>
<i>at 2018-05-11T00:57:29-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge tag 'upstream/2.2.2'
Upstream version 2.2.2
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbgenomicconsensus/commit/4d4c8a01568800c6dac54365af4a8b2f438df5f6">4d4c8a01</a></strong>
<div>
<span>by Afif Elghraoui</span>
<i>at 2018-05-11T01:04:30-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add README.source explaining how to select upstream snapshots for packaging
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbgenomicconsensus/commit/4a506e1533fd0f3617eb6b64c8d5cb331d697543">4a506e15</a></strong>
<div>
<span>by Afif Elghraoui</span>
<i>at 2018-05-11T01:05:26-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbgenomicconsensus/commit/c380f08cc6986109e3d5dd6029791cd74ead734d">c380f08c</a></strong>
<div>
<span>by Afif Elghraoui</span>
<i>at 2018-05-11T01:06:33-04:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge branch 'master' of ssh://salsa.debian.org/med-team/pbgenomicconsensus
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
</a>
</li>
<li class="file-stats">
<a href="#99c738e7d1f1f228db3f2802b37507b0ff0d0c0d">
GenomicConsensus/ResultCollector.py
</a>
</li>
<li class="file-stats">
<a href="#85ae376100cde4b8d9fe7228a847d70dc5540221">
GenomicConsensus/Worker.py
</a>
</li>
<li class="file-stats">
<a href="#438f7a424514a3e27a4a6fd3606f44eb75491140">
GenomicConsensus/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#d1ddb567621a639c70a69c1ad02cf3fcd3a2a0fb">
GenomicConsensus/algorithmSelection.py
</a>
</li>
<li class="file-stats">
<a href="#6a798ff4a686434b9a5b173fcb1a47c7d1f57237">
GenomicConsensus/arrow/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#e98081513decc5c2f9c0b043551255f723e3e716">
GenomicConsensus/arrow/arrow.py
</a>
</li>
<li class="file-stats">
<a href="#678b41493cf62208dfad16db893dfaff649c6763">
GenomicConsensus/arrow/diploid.py
</a>
</li>
<li class="file-stats">
<a href="#10a7492bddaa0f2a5c4ee65ad9b750d9e2e0fa2a">
GenomicConsensus/arrow/evidence.py
</a>
</li>
<li class="file-stats">
<a href="#48d5db9c8417ce95dae83f2d5437fea893c40f2a">
GenomicConsensus/arrow/model.py
</a>
</li>
<li class="file-stats">
<a href="#b98addc5fea67baffb881165f8b36bf6987445bc">
GenomicConsensus/arrow/utils.py
</a>
</li>
<li class="file-stats">
<a href="#4044a93d62b2752129f14e71ebd79e6d1319442a">
GenomicConsensus/consensus.py
</a>
</li>
<li class="file-stats">
<a href="#008d0e3444457abc4db366abc89cfc552c420f08">
GenomicConsensus/io/VariantsGffWriter.py
</a>
</li>
<li class="file-stats">
<a href="#07e6c57b2dbb1ad4d9cbe7d61e28b7da0035184e">
<span class="new-file">
+
GenomicConsensus/io/VariantsVcfWriter.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#a8d6103d0497e083ff2d22c5834c97bdc6eb461c">
GenomicConsensus/io/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#5b1044c2f0a139d8c4d9f30987c98239dcf02c94">
GenomicConsensus/io/utils.py
</a>
</li>
<li class="file-stats">
<a href="#87125ef1f4971d3a71d4134fb08b0a2bbcf5275c">
GenomicConsensus/main.py
</a>
</li>
<li class="file-stats">
<a href="#4e9778bec0a993507bd561e9780cca7aea66c050">
GenomicConsensus/options.py
</a>
</li>
<li class="file-stats">
<a href="#51e2096352335dbbb81e0a625f6adfe83c2c4210">
GenomicConsensus/plurality/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#328414e82d8f9c897af7e23a97d9b65a8e705ac2">
GenomicConsensus/plurality/plurality.py
</a>
</li>
<li class="file-stats">
<a href="#d1c47c0879406bca7e4c97de1f29923126cc0e4b">
GenomicConsensus/poa/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#15717a3bfe329895159f1f07cab42c961286f088">
GenomicConsensus/poa/poa.py
</a>
</li>
<li class="file-stats">
<a href="#8d53b81ddfbe049765226bda5186e520bc826625">
GenomicConsensus/quiver/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#ac2c903d7f05c995229ca61352abffeb51d1bec8">
GenomicConsensus/quiver/diploid.py
</a>
</li>
<li class="file-stats">
<a href="#e23721c1b36a2e98ea3a7ecde3e9f4b0dfe611e1">
GenomicConsensus/quiver/evidence.py
</a>
</li>
<li class="file-stats">
<a href="#856baa2e3e9890bbfe4384654d1fe0837c91b6de">
GenomicConsensus/quiver/model.py
</a>
</li>
<li class="file-stats">
<a href="#4b0c4cfefba6ba2c26cd101d3e75167978675c95">
GenomicConsensus/quiver/quiver.py
</a>
</li>
<li class="file-stats">
<a href="#c8320802a9ce91a0fb7cba1dfa0f75a7b6a12bd9">
GenomicConsensus/quiver/resources/2013-03/GenomicConsensus/QuiverParameters.ini
</a>
</li>
<li class="file-stats">
<a href="#e7b994e26e2e8deb31e646873fa730ea9c0e4dc3">
GenomicConsensus/quiver/resources/2013-05/GenomicConsensus/QuiverParameters.ini
</a>
</li>
<li class="file-stats">
<a href="#afcc3542c4ee1b7bf3e924d8190e49c6c4d4358c">
GenomicConsensus/quiver/resources/2013-09/GenomicConsensus/QuiverParameters.ini
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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