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<h3>
Sascha Steinbiss pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/augustus">Debian Med / augustus</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/augustus/commit/bd4fde9df771a76ce6d48fe33143263c66f5132e">bd4fde9d</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2018-05-11T12:17:33+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 3.3.1+dfsg</pre>
</li>
</ul>
<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#0bf8e07cde43468bfe21b33d874b182669de855d">
HISTORY.TXT
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<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
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<li class="file-stats">
<a href="#1ed6f5782121b1d5ac82aca6d59599499295ccf2">
README.TXT
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<li class="file-stats">
<a href="#84e35ca35d6b8e868532c59f12378a63bd6efa3d">
auxprogs/Makefile
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<li class="file-stats">
<a href="#3ff7aa93d527572593aa9d194b680d85a8c01da7">
auxprogs/aln2wig/Makefile
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<li class="file-stats">
<a href="#79190e737b673450f87f83c8f91102d4de682743">
auxprogs/aln2wig/aln2wig.c
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<li class="file-stats">
<a href="#cdf6e1407e50d520feae3e2bdf544854ce2fd566">
auxprogs/auxBamFilters/README
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<li class="file-stats">
<a href="#20bcc49f96b957b63ab170f271d5e60ec94c2169">
auxprogs/auxBamFilters/eg1.s.bam
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<li class="file-stats">
<a href="#a99efd6f138795c47fd7fad16013da897fb345f5">
auxprogs/auxBamFilters/eg2.bam
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<li class="file-stats">
<a href="#5a5220063e8abc868c40cb99b65678eab0c467cf">
auxprogs/auxBamFilters/operation_H_filter.txt
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<li class="file-stats">
<a href="#aba5274bb037059b5004bd2cffa96e6f97cb5462">
auxprogs/auxBamFilters/operation_N_filter.txt
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<li class="file-stats">
<a href="#52d38dca1b9509f2369cdae677855c47047aab0e">
auxprogs/auxBamFilters/toyAlignments.bam
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<li class="file-stats">
<a href="#ce64319b90f1192ec3897ebb0ef99b9c5a2caa7e">
auxprogs/bam2wig/Makefile
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<li class="file-stats">
<a href="#0de9c2470f48eb27ef3ee615e630d7190bba7bd2">
auxprogs/bam2wig/README.txt
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<li class="file-stats">
<a href="#032d438b2adb9ead01a1d28c77410b66231802b6">
auxprogs/checkTargetSortedness/Makefile
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<li class="file-stats">
<a href="#88a704b00e9010bcf958d8341f9a13ebff4eec4f">
auxprogs/checkTargetSortedness/checkTargetSortedness.c
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<li class="file-stats">
<a href="#a7deae548a096fca3a44383f85d8784f0d3e99eb">
auxprogs/compileSpliceCands/Makefile
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<li class="file-stats">
<a href="#d5c4e129e6c4d0321e7bf6ed681672adb67799b5">
auxprogs/compileSpliceCands/chr21.fa
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<li class="file-stats">
<a href="#546c2ad233a361c2a67199262cbafa4194f6c7f5">
auxprogs/compileSpliceCands/compileSpliceCands.c
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<li class="file-stats">
<a href="#f748f0e9852bd2d6a8e97af3e3fb966819f41ac1">
auxprogs/compileSpliceCands/list.c
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<li class="file-stats">
<a href="#47d540f084e1e44ba2836f8bfb762ee8057fd798">
auxprogs/compileSpliceCands/list.h
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<li class="file-stats">
<a href="#82162156e83d3775aae02612795c6da760acdec0">
auxprogs/compileSpliceCands/out.gff
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<li class="file-stats">
<a href="#41b51d4e4c6431bc24265fc1148e9ae9c5fd0694">
auxprogs/filterBam/Makefile
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<li class="file-stats">
<a href="#48bfa381b4079d467ecc6ea70ca594270e246e5c">
auxprogs/filterBam/README
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<li class="file-stats">
<a href="#d479517b527d0ed7b140f5a069b1885e3fdaa702">
auxprogs/filterBam/src/Makefile
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<li class="file-stats">
<a href="#8a05581aa695b739b8d2baac6d1d9fe2bdef5057">
auxprogs/filterBam/src/bamtools/LICENSE
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<li class="file-stats">
<a href="#898f2aaedd9f1084a787cba642e4074f1b9cdf5f">
auxprogs/filterBam/src/bamtools/bamtools_sort.h
</a>
</li>
<li class="file-stats">
<a href="#784d4bd9c30af60bed349bbb9f5a3e9f57feb102">
auxprogs/filterBam/src/bamtools/bamtools_tool.h
</a>
</li>
<li class="file-stats">
<a href="#e43e3d8381d425f410ceab30708e6aeba9c029e8">
auxprogs/filterBam/src/filterBam.cc
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</li>
<li class="file-stats">
<a href="#863cac5f4adf6d7eae3f5fdf9fa1d17398992643">
auxprogs/filterBam/src/functions/MatePairs.cc
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</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
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