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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/prime-phylo">Debian Med / prime-phylo</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/prime-phylo/commit/7edf3568b8ecf1b084debb0b8f067a61b76a5a44">7edf3568</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-05-22T14:12:35+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">'beep::' is redundant inside 'namespace beep' block
</pre>
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<strong><a href="https://salsa.debian.org/med-team/prime-phylo/commit/4d6a6f0da858de54ff8f3fdb398c5d7e18315b82">4d6a6f0d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-05-22T14:13:27+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
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<h4>4 changed files:</h4>
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#e8e72311e61863945066972d3b287fa087bc170f">
<span class="deleted-file">
−
debian/patches/fix-gcc-6.patch
</span>
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<li class="file-stats">
<a href="#5dd91434d54c3fa68bd18b9d1b43e92d4e34983a">
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+
debian/patches/fix-gcc-8.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/prime-phylo/compare/acdee466e36999f743c4f52a456c71a62dcc482b...4d6a6f0da858de54ff8f3fdb398c5d7e18315b82#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">prime-phylo (1.0.11-6) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> [ Juhani Numminen ]</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * 'beep::' is redundant inside 'namespace beep' block</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> Closes: #897837</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Tue, 22 May 2018 14:12:53 +0200</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">prime-phylo (1.0.11-5) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> [ Andreas Tille ]</span>
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<li id="e8e72311e61863945066972d3b287fa087bc170f">
<a href="https://salsa.debian.org/med-team/prime-phylo/compare/acdee466e36999f743c4f52a456c71a62dcc482b...4d6a6f0da858de54ff8f3fdb398c5d7e18315b82#e8e72311e61863945066972d3b287fa087bc170f"><strong>debian/patches/fix-gcc-6.patch</strong>
deleted
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="diff">Description: fix building with GCC 6</span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="diff"> This patch adds support for GCC 6 by forcing an older C++ standard</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="diff"> other than the one used by default now.</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="diff"> This also bumps CMake version level used to 3.1, which also required some</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="diff"> extra adjustment due to https://cmake.org/cmake/help/v3.0/policy/CMP0026.html.</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="diff">Author: Sascha Steinbiss <satta@debian.org></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/CMakeLists.txt</span></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/CMakeLists.txt</span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -2,7 +2,7 @@</span></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="diff"> # Level: trunk/CMakeLists.txt</span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="diff"> ################################################</span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-cmake_minimum_required(VERSION 2.8)</span></span>
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14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+cmake_minimum_required(VERSION 3.1)</span></span>
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15
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="diff"> project(prime-phylo CXX)</span>
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16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="diff"> </span>
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17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="diff"> SET(CMAKE_BUILD_TYPE Debug)</span>
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18
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -14,6 +14,7 @@</span></span>
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19
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="diff"> set(PACKAGE_VERSION ${CPACK_PACKAGE_VERSION_MAJOR}.${CPACK_PACKAGE_VERSION_MINOR}.${CPACK_PACKAGE_VERSION_PATCH})</span>
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20
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="diff"> set(CPACK_SOURCE_PACKAGE_FILE_NAME ${PROJECT_NAME}-${PACKAGE_VERSION})</span>
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21
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="diff"> set(CPACK_GENERATOR RPM;DEB)</span>
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22
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+set(CMAKE_CXX_STANDARD 98)</span></span>
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23
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="diff"> </span>
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24
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="diff"> set(tmp_man_pages_dir ${CMAKE_BINARY_DIR}/tmp_manpages)</span>
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25
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -132,4 +133,4 @@</span></span>
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27
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="diff"> file(MAKE_DIRECTORY "${vagrantdir}")</span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="diff"> configure_file(excluded_from_release/packaging/debian/Vagrantfile.cmake "${vagrant_dir}/Vagrantfile" @ONLY)</span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="diff"> configure_file(excluded_from_release/packaging/debian/provision.sh.cmake "${vagrant_dir}/provision.sh" @ONLY)</span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-endif()</span></span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="diff">\ No newline at end of file</span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+endif()</span></span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/src/cxx/CMakeLists.txt</span></span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/cxx/CMakeLists.txt</span></span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -363,7 +363,7 @@</span></span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="diff"> #===========================================================================</span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="diff"> macro(prime_add_tests tests_dir)</span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- get_target_property(program_exe ${programname_of_this_subdir} LOCATION)</span></span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ get_target_property(program_exe ${programname_of_this_subdir} $<TARGET_FILE>)</span></span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="diff"> file(GLOB tests RELATIVE ${CMAKE_CURRENT_SOURCE_DIR} ${tests_dir}/test*[^~])</span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="diff"> foreach(i ${tests})</span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="diff"> get_filename_component(test ${i} NAME)</span></pre>
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<li id="5dd91434d54c3fa68bd18b9d1b43e92d4e34983a">
<a href="https://salsa.debian.org/med-team/prime-phylo/compare/acdee466e36999f743c4f52a456c71a62dcc482b...4d6a6f0da858de54ff8f3fdb398c5d7e18315b82#5dd91434d54c3fa68bd18b9d1b43e92d4e34983a"><strong>debian/patches/fix-gcc-8.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff">Description: 'beep::' is redundant inside 'namespace beep' block</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"> Fixes FTBFS with GCC 8: PrimeOptionMap.hh:162:33: error:</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"> 'std::ostream& beep::operator<<(std::ostream&, const beep::PrimeOptionMap&)'</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"> should have been declared inside 'beep'</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff">Author: Juhani Numminen <juhaninumminen0@gmail.com></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff">Bug-Debian: https://bugs.debian.org/897837</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff">Last-Update: 2018-05-22</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/src/cxx/libraries/prime/PrimeOptionMap.hh</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/src/cxx/libraries/prime/PrimeOptionMap.hh</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -158,9 +158,9 @@</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> bool parseOptions(int& argIndex, int argc, char **argv);</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> //! IO</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- friend std::ostream& beep::operator<<(std::ostream& o, </span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ friend std::ostream& operator<<(std::ostream& o,</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> const PrimeOptionMap& pom);</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- friend std::ostream& beep::operator<<(std::ostream& o, </span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ friend std::ostream& operator<<(std::ostream& o,</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> const PrimeOption& po);</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> static std::string formatMessage(std::string opt, std::string usageText);</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"></span></pre>
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<li id="bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<a href="https://salsa.debian.org/med-team/prime-phylo/compare/acdee466e36999f743c4f52a456c71a62dcc482b...4d6a6f0da858de54ff8f3fdb398c5d7e18315b82#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext"># fix-gcc-6.patch</span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">fix-ftbfs-with-Boost160.patch</span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">fix-gcc-8.patch</span></pre>
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