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<h3>
Liubov Chuprikova pushed to branch master
at <a href="https://salsa.debian.org/med-team/ncbi-tools6">Debian Med / ncbi-tools6</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-tools6/commit/95a5a137b62ed918021e6ef1c2927a77d09bbb06">95a5a137</a></strong>
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<span>by Liubov Chuprikova</span>
<i>at 2018-05-23T20:15:42+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Added copyright and license for the test data files, except one
</pre>
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<h4>1 changed file:</h4>
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<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
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<h4>Changes:</h4>
<li id="adb7f75f79e3bb85eb62912a2904c5d24af878fb">
<a href="https://salsa.debian.org/med-team/ncbi-tools6/commit/95a5a137b62ed918021e6ef1c2927a77d09bbb06#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4,7 +4,7 @@ Upstream-Name: ncbi</td>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Source: http://ftp.ncbi.nih.gov/toolbox/ncbi_tools/old/</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Files: *</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">Copyright: 1996-201<span class="idiff left right">7</span> NCBI</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">Copyright: 1996-201<span class="idiff left right">8</span> NCBI</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">License: public_domain</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">Files: debian/*</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -13,33 +13,32 @@ Copyright: 1998-1999 Stephane Bortzmeyer <bortzmeyer@pasteur.fr></td>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> 2001-2017 Aaron M. Ucko <ucko@debian.org></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">License: public_domain</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext">Files: debian/tests/test-data/nc0225.aso.gz</span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> debian/tests/test-data/dsRNA_viruses.*</span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext">Comment: </span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> To dowload the files use:</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">Files: debian/tests/test-data/* (except for trnascan-se_sample.output)</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext">Copyright: 1996-2018 NCBI</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext">License: public_domain</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext">Comment:</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> nc0225.aso.gz and dsRNA_viruses.* can be dowloaded by running:</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> wget ftp://ftp.ncbi.nih.gov/ncbi-asn1/daily-nc/nc0225.aso.gz</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> wget ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/ASN_BINARY/Viruses/dsRNA_viruses.ags.gz</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> wget ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/GENE_INFO/Viruses/dsRNA_viruses.gene_info.gz</span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext">Files: debian/tests/test-data/spidey_*</span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext">Comment:</span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext"> The sequences can be downloaded using their accession numbers with help of idfetch, e.g.:</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> spidey_* can be downloaded using their accession numbers with help of idfetch, e.g.:</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> idfetch -dn -t 5 -c 1 -g 1327850419 -o spidey_mRNA.fasta</span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> idfetch -dn -t 5 -c 1 -g 568802167 -o spidey_genome.fasta</span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> Sc_16.sbt was generated by NCBI Submission Portal:</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> https://submit.ncbi.nlm.nih.gov/genbank/template/submission/</span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> The examples for Sc_16.fsa and Sc_16.tbl were taken from here:</span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext"> https://www.ncbi.nlm.nih.gov/genbank/tbl2asn2/</span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext">Files: debian/tests/test-data/trnascan-se_sample.output</span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext">Copyright: ?</span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext">License: ?</span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext">Comment:</span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> The file was generated by tRNAscan-SE 2.0:</span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> tRNAscan-SE -d -y -o trnascan-se_sample.output /usr/share/doc/trnascan-se/examples/Example1.fa</span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext">Files: debian/tests/test-data/Sc_16.*</span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="plaintext">Comment:</span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="plaintext"> The example of a template file was generated by NCBI Submission Portal:</span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="plaintext"> https://submit.ncbi.nlm.nih.gov/genbank/template/submission/</span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="plaintext"> The sequence and feature table examples were taken from here:</span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="plaintext"> https://www.ncbi.nlm.nih.gov/genbank/tbl2asn2/</span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext">License: public_domain</span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> The NCBI toolkit has been put into the public domain, completely unfettered:</span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> .</span>
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