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GitLab

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<h3>

Andreas Tille pushed to branch upstream

at <a href="https://salsa.debian.org/med-team/malt">Debian Med / malt</a>

</h3>

<h4>

Commits:

</h4>

<ul>

<li>

<strong><a href="https://salsa.debian.org/med-team/malt/commit/4a3900a3e0ebe06097dd6dc5370b204b4e8c3dd7">4a3900a3</a></strong>

<div>

<span>by Andreas Tille</span>

<i>at 2018-05-27T14:13:41+02:00</i>

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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.0+git20180524.5984e06</pre>

</li>

</ul>

<h4>30 changed files:</h4>

<ul>

<li class="file-stats">

<a href="#557cb9462ec8cf34a2ae73c76311ddcf81ec9888">

antbuild/build.xml

</a>

</li>

<li class="file-stats">

<a href="#109eb8bcea0d171e6aaad87e17bbee0777b1ad2d">

installer/malt.install4j

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</li>

<li class="file-stats">

<a href="#e9481108cd135be622075b130cd736cc756e3fe9">

src/malt/AlignmentEngine.java

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</li>

<li class="file-stats">

<a href="#5f35a45646b57cb10d0c0f8939fe754747a98d25">

src/malt/DataForInnerLoop.java

</a>

</li>

<li class="file-stats">

<a href="#b150eb75a44186a5c6a0e1f981f4e7eb0c9a6684">

src/malt/ITextProducer.java

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</li>

<li class="file-stats">

<a href="#a29adc79a660738b51128c3062d97052109bf7af">

src/malt/MaltBuild.java

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</li>

<li class="file-stats">

<a href="#124b0460a7ff654f9199bbac021155cc764a182c">

src/malt/MaltOptions.java

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</li>

<li class="file-stats">

<a href="#250b9512f0fe1bb4adaea02e87a460e5309a9012">

src/malt/MaltRun.java

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</li>

<li class="file-stats">

<a href="#ca7cddd48327fd072d577e1dbb1062f48e36a21c">

src/malt/TestIO.java

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<li class="file-stats">

<a href="#0316656406991b22ad8f841fa7b38fd167961b61">

src/malt/Version.java

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<li class="file-stats">

<a href="#be0899205e7d40571446a0e95dfaa7cd1ea18d43">

src/malt/align/AlignerOptions.java

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<li class="file-stats">

<a href="#af88242fa2c59f1c769ffb4c2e2787715a1d87ec">

src/malt/align/BandedAligner.java

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</li>

<li class="file-stats">

<a href="#c660940afc1b0727b7da67e1d3f503fc4ca91ad6">

src/malt/align/BlastStatisticsHelper.java

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<li class="file-stats">

<a href="#a8003e6d6ec01f056abad47c9e57f645469b3473">

src/malt/align/DNAScoringMatrix.java

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<li class="file-stats">

<a href="#f8995192fb57f7b5b775f34658e09afc0849e5ac">

src/malt/align/IScoringMatrix.java

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<li class="file-stats">

<a href="#c18580f99728e86576d9d387388e9c00bcfe4293">

src/malt/align/ProteinScoringMatrix.java

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</li>

<li class="file-stats">

<a href="#f0ab0252df6de4f40e842d6f42f927c0b9f30332">

src/malt/align/SimpleAligner4DNA.java

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<li class="file-stats">

<a href="#6139f24bebc5f461d1dd61d365e1d52807799ef9">

<span class="deleted-file">

−

src/malt/analysis/OrganismsProfile.java

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</li>

<li class="file-stats">

<a href="#603318fb44f50f3e830a2ea25b040b481b901dcf">

<span class="deleted-file">

−

src/malt/analysis/OrganismsProfileMerger.java

</span>

</a>

</li>

<li class="file-stats">

<a href="#6238fc45c36de28b579c3e14d6037a85365841a5">

<span class="deleted-file">

−

src/malt/analysis/QueryItem.java

</span>

</a>

</li>

<li class="file-stats">

<a href="#70931faaa7e81b3d0ee6f4ac2a4bdfd0cca049bb">

<span class="deleted-file">

−

src/malt/analysis/ReadMatchItem.java

</span>

</a>

</li>

<li class="file-stats">

<a href="#03b80a9c50cf54bcf129bafc125286e8fdbaa49f">

src/malt/data/BuildRow.java

</a>

</li>

<li class="file-stats">

<a href="#a119e3a1631dc3d56664c83707c0479eba272258">

src/malt/data/DNA5.java

</a>

</li>

<li class="file-stats">

<a href="#7a60d60b7681a02e2a26a112488d36bb12ff7e31">

src/malt/data/IAlphabet.java

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</li>

<li class="file-stats">

<a href="#8018fdcc856bd5cf72c6087afa4942856ffcbde2">

src/malt/data/INormalizer.java

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</li>

<li class="file-stats">

<a href="#ecef89d6356b91d1869ac6d57d263fb9b24f614c">

src/malt/data/ISequenceAccessor.java

</a>

</li>

<li class="file-stats">

<a href="#d8af483744dec150ef4311e307015cb82cd775d1">

src/malt/data/ProteinAlphabet.java

</a>

</li>

<li class="file-stats">

<a href="#287ee1d92970a0174fb9a422e0f5b5adf4ce2be2">

src/malt/data/QuerySequence2MatchesCache.java

</a>

</li>

<li class="file-stats">

<a href="#3436623e0aebfa397d0da27c9df489ab065a4509">

src/malt/data/ReadMatch.java

</a>

</li>

<li class="file-stats">

<a href="#952876a7e04a19e43e8f5add320f61b0f55e55ae">

src/malt/data/ReducedAlphabet.java

</a>

</li>

</ul>

<h5>The diff was not included because it is too large.</h5>

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