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<h3>
Liubov Chuprikova pushed to branch master
at <a href="https://salsa.debian.org/med-team/primer3">Debian Med / primer3</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/primer3/commit/26d7d5fe8caa561de98e0f59a1dd5ae0ecabd7fa">26d7d5fe</a></strong>
<div>
<span>by Liubov Chuprikova</span>
<i>at 2018-05-29T12:55:22+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Skip one more test, missed earlier
</pre>
</li>
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<h4>1 changed file:</h4>
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
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<h4>Changes:</h4>
<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/primer3/commit/26d7d5fe8caa561de98e0f59a1dd5ae0ecabd7fa#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -8,9 +8,11 @@ sampledir:=$(CURDIR)/debian/$(DEB_SOURCE)-examples/usr/share/doc/$(DEB_SOURCE)/e</td>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">BUILDARCH:=$(shell dpkg-architecture -q DEB_BUILD_ARCH_ENDIAN)</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext">FAILED_TESTS:='primer_masker' \</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"><span class="idiff left right">P3CORE_</span>FAILED_TESTS:='primer_masker' \</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> 'primer_masker_formatted'</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">FAILED_TESTS:=testmasker</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">%:</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> dh $@ --sourcedirectory=src</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -20,14 +22,18 @@ override_dh_auto_build:</td>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext">override_dh_auto_test:</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext">ifneq ($(BUILDARCH),little)</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> cp -a test/p3test.pl test/p3test.pl~</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> cp -a test/Makefile test/Makefile~</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> # exclude tests known to fail on big endian</span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> # See README.source for further explanation.</span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> for tst in $(FAILED_TESTS) ; do sed -i "/$${tst}/d" test/p3test.pl ; done</span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> for tst in $(P3CORE_FAILED_TESTS) ; do sed -i "/$${tst}/d" test/p3test.pl ; done</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> sed -i "0,/$(FAILED_TESTS)/s///" test/Makefile</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> sed -i "/$(FAILED_TESTS)/,/endif/d" test/Makefile</span>
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26
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31
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext">endif</span>
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27
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32
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> dh_auto_test --sourcedirectory=test</span>
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28
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33
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext">ifneq ($(BUILDARCH),little)</span>
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29
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34
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> # restore original test file</span>
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30
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35
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> mv test/p3test.pl~ test/p3test.pl</span>
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36
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"> mv test/Makefile~ test/Makefile</span>
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31
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37
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext">endif</span>
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32
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38
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> dh clean --sourcedirectory=test</span>
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33
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39
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="36" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="42" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -36,9 +42,13 @@ override_dh_installexamples:</td>
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36
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42
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> dh_installexamples</span>
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37
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43
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> mkdir -p $(sampledir)/test;</span>
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38
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44
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> mkdir -p $(sampledir)/src;</span>
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45
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"> mkdir -p $(sampledir)/settings_files;</span>
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46
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext"> mkdir -p $(sampledir)/kmer_lists;</span>
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39
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47
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> cp -aR ./test/* $(sampledir)/test;</span>
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40
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<td class="diff-line-num new_line" data-linenumber="48" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
48
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> cp -aR ./src/humrep_and_simple.txt $(sampledir)/src;</span>
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41
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="plaintext"> cp -a settings_files/primer*.txt $(sampledir)/;</span>
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49
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext"> cp -a settings_files/primer*.txt $(sampledir)/settings_files;</span>
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50
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="plaintext"> cp -aR ./kmer_lists/*.list $(sampledir)/kmer_lists;</span>
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51
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext"></span>
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42
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52
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> chmod -x $(sampledir)/test/thal*;</span>
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<td class="diff-line-num old_line" data-linenumber="43" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
43
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53
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> sed -i 's#/usr/local/bin/perl#/usr/bin/perl#' $(sampledir)/test/long_seq_tm_test.pl ;</span>
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44
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54
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> sed -i 's#/usr/local/bin/perl#/usr/bin/perl#' $(sampledir)/test/vgrep.pl ;</span></pre>
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