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<h3>
Andreas Tille pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/examl">Debian Med / examl</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/examl/commit/e5ccf5f0d0a1b14399dd1cbc7cd5c71d6c78371d">e5ccf5f0</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-06-08T13:10:40+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 3.0.21</pre>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#0d2f7444498190b368213d7d5c1e250b61067390">
parser/parsePartitions.c
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<li class="file-stats">
<a href="#f613dd0083cd06f090ef45b6eb7946d760b2dfcb">
versionHeader/version.h
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<h4>Changes:</h4>
<li id="0d2f7444498190b368213d7d5c1e250b61067390">
<a href="https://salsa.debian.org/med-team/examl/commit/e5ccf5f0d0a1b14399dd1cbc7cd5c71d6c78371d#0d2f7444498190b368213d7d5c1e250b61067390"><strong>parser/parsePartitions.c</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -370,7 +370,15 @@ static int myGetline(char **lineptr, int *n, FILE *stream)</td>
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370
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370
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<pre style="margin: 0;"> <span id="LC370" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">p</span> <span class="o" style="font-weight: 600;">-</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">lineptr</span><span class="p">;</span></span>
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371
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371
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<pre style="margin: 0;"> <span id="LC371" class="line" lang="c"><span class="p">}</span></span>
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372
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372
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<pre style="margin: 0;"> <span id="LC372" class="line" lang="c"></span>
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373
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<pre style="margin: 0;">-<span id="LC373" class="line" lang="c"></span>
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373
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<pre style="margin: 0;">+<span id="LC373" class="line" lang="c"><span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="nf" style="color: #900; font-weight: 600;">nonContiguousError</span><span class="p">(</span><span class="n" style="color: #333;">analdef</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">adef</span><span class="p">)</span></span>
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374
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<pre style="margin: 0;">+<span id="LC374" class="line" lang="c"><span class="p">{</span></span>
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375
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<pre style="margin: 0;">+<span id="LC375" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">adef</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">compressPatterns</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">FALSE</span><span class="p">)</span></span>
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376
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<pre style="margin: 0;">+<span id="LC376" class="line" lang="c"> <span class="p">{</span></span>
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377
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<pre style="margin: 0;">+<span id="LC377" class="line" lang="c"> <span class="n" style="color: #333;">printf</span><span class="p">(</span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">Error: You are not allowed to use interleaved partitions, that is, assign non-contiguous sites</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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378
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<pre style="margin: 0;">+<span id="LC378" class="line" lang="c"> <span class="n" style="color: #333;">printf</span><span class="p">(</span><span class="s" style="color: #d14;">"to the same partition model, when pattern compression is disabled via the -c flag!</span><span class="se" style="color: #d14;">\n\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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379
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<pre style="margin: 0;">+<span id="LC379" class="line" lang="c"> <span class="n" style="color: #333;">exit</span><span class="p">(</span><span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="p">);</span></span>
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380
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<pre style="margin: 0;">+<span id="LC380" class="line" lang="c"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC381" class="line" lang="c"><span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC382" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC383" class="line" lang="c"><span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="nf" style="color: #900; font-weight: 600;">parsePartitions</span><span class="p">(</span><span class="n" style="color: #333;">analdef</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">adef</span><span class="p">,</span> <span class="n" style="color: #333;">rawdata</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">rdta</span><span class="p">,</span> <span class="n" style="color: #333;">tree</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">tr</span><span class="p">)</span></span>
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384
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<pre style="margin: 0;"> <span id="LC384" class="line" lang="c"><span class="p">{</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="499" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="507" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -499,6 +507,7 @@ void parsePartitions(analdef *adef, rawdata *rdta, tree *tr)</td>
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499
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507
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<pre style="margin: 0;"> <span id="LC507" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">ch</span> <span class="o" style="font-weight: 600;">==</span> <span class="sc" style="color: #d14;">','</span><span class="p">)</span></span>
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500
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508
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<pre style="margin: 0;"> <span id="LC508" class="line" lang="c"> <span class="p">{</span> </span>
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501
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509
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<pre style="margin: 0;"> <span id="LC509" class="line" lang="c"> <span class="n" style="color: #333;">upper</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">lower</span><span class="p">;</span></span>
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510
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<pre style="margin: 0;">+<span id="LC510" class="line" lang="c"> <span class="n" style="color: #333;">nonContiguousError</span><span class="p">(</span><span class="n" style="color: #333;">adef</span><span class="p">);</span></span>
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502
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511
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<pre style="margin: 0;"> <span id="LC511" class="line" lang="c"> <span class="k" style="font-weight: 600;">goto</span> <span class="n" style="color: #333;">SINGLE_NUMBER</span><span class="p">;</span></span>
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503
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512
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<pre style="margin: 0;"> <span id="LC512" class="line" lang="c"> <span class="p">}</span></span>
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504
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513
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<pre style="margin: 0;"> <span id="LC513" class="line" lang="c"> </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="542" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="551" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -542,6 +551,7 @@ void parsePartitions(analdef *adef, rawdata *rdta, tree *tr)</td>
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542
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551
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<pre style="margin: 0;"> <span id="LC551" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">ch</span> <span class="o" style="font-weight: 600;">==</span> <span class="sc" style="color: #d14;">','</span><span class="p">)</span></span>
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543
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552
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<pre style="margin: 0;"> <span id="LC552" class="line" lang="c"> <span class="p">{</span> </span>
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544
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553
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<pre style="margin: 0;"> <span id="LC553" class="line" lang="c"> <span class="n" style="color: #333;">ch</span><span class="o" style="font-weight: 600;">++</span><span class="p">;</span></span>
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554
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<pre style="margin: 0;">+<span id="LC554" class="line" lang="c"> <span class="n" style="color: #333;">nonContiguousError</span><span class="p">(</span><span class="n" style="color: #333;">adef</span><span class="p">);</span></span>
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545
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555
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<pre style="margin: 0;"> <span id="LC555" class="line" lang="c"> <span class="k" style="font-weight: 600;">goto</span> <span class="n" style="color: #333;">numberPairs</span><span class="p">;</span></span>
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546
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556
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<pre style="margin: 0;"> <span id="LC556" class="line" lang="c"> <span class="p">}</span></span>
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547
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557
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<pre style="margin: 0;"> <span id="LC557" class="line" lang="c"> </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="556" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="566" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -556,13 +566,8 @@ void parsePartitions(analdef *adef, rawdata *rdta, tree *tr)</td>
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556
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566
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<pre style="margin: 0;"> <span id="LC566" class="line" lang="c"> <span class="n" style="color: #333;">exit</span><span class="p">(</span><span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="p">);</span></span>
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557
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567
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<pre style="margin: 0;"> <span id="LC567" class="line" lang="c"> <span class="p">}</span> </span>
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558
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568
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<pre style="margin: 0;"> <span id="LC568" class="line" lang="c"></span>
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559
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<pre style="margin: 0;">-<span id="LC559" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="n" style="color: #333;">adef</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">compressPatterns</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">FALSE</span><span class="p">)</span></span>
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560
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<pre style="margin: 0;">-<span id="LC560" class="line" lang="c"> <span class="p">{</span></span>
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561
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<pre style="margin: 0;">-<span id="LC561" class="line" lang="c"> <span class="n" style="color: #333;">printf</span><span class="p">(</span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">Error: You are not allowed to use interleaved partitions, that is, assign non-contiguous sites</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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562
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<pre style="margin: 0;">-<span id="LC562" class="line" lang="c"> <span class="n" style="color: #333;">printf</span><span class="p">(</span><span class="s" style="color: #d14;">"to the same partition model, when pattern compression is disabled via the -c flag!</span><span class="se" style="color: #d14;">\n\n</span><span class="s" style="color: #d14;">"</span><span class="p">);</span></span>
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563
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<pre style="margin: 0;">-<span id="LC563" class="line" lang="c"> <span class="n" style="color: #333;">exit</span><span class="p">(</span><span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="p">);</span></span>
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564
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<pre style="margin: 0;">-<span id="LC564" class="line" lang="c"> <span class="p">}</span></span>
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565
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<pre style="margin: 0;">-<span id="LC565" class="line" lang="c"> </span>
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<pre style="margin: 0;">+<span id="LC569" class="line" lang="c"> <span class="n" style="color: #333;">nonContiguousError</span><span class="p">(</span><span class="n" style="color: #333;">adef</span><span class="p">);</span></span>
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570
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<pre style="margin: 0;">+<span id="LC570" class="line" lang="c"></span>
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566
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571
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<pre style="margin: 0;"> <span id="LC571" class="line" lang="c"> <span class="n" style="color: #333;">l</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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567
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572
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<pre style="margin: 0;"> <span id="LC572" class="line" lang="c"> <span class="k" style="font-weight: 600;">while</span><span class="p">(</span><span class="n" style="color: #333;">isNum</span><span class="p">(</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">ch</span><span class="p">))</span></span>
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568
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573
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<pre style="margin: 0;"> <span id="LC573" class="line" lang="c"> <span class="p">{</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="582" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="587" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -582,6 +587,7 @@ void parsePartitions(analdef *adef, rawdata *rdta, tree *tr)</td>
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582
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587
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<pre style="margin: 0;"> <span id="LC587" class="line" lang="c"> <span class="k" style="font-weight: 600;">if</span><span class="p">(</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">ch</span> <span class="o" style="font-weight: 600;">==</span> <span class="sc" style="color: #d14;">','</span><span class="p">)</span></span>
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583
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588
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<pre style="margin: 0;"> <span id="LC588" class="line" lang="c"> <span class="p">{</span> </span>
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584
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589
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<pre style="margin: 0;"> <span id="LC589" class="line" lang="c"> <span class="n" style="color: #333;">ch</span><span class="o" style="font-weight: 600;">++</span><span class="p">;</span></span>
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590
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<pre style="margin: 0;">+<span id="LC590" class="line" lang="c"> <span class="n" style="color: #333;">nonContiguousError</span><span class="p">(</span><span class="n" style="color: #333;">adef</span><span class="p">);</span></span>
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585
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591
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<pre style="margin: 0;"> <span id="LC591" class="line" lang="c"> <span class="k" style="font-weight: 600;">goto</span> <span class="n" style="color: #333;">numberPairs</span><span class="p">;</span></span>
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586
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592
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<pre style="margin: 0;"> <span id="LC592" class="line" lang="c"> <span class="p">}</span></span>
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587
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593
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<pre style="margin: 0;"> <span id="LC593" class="line" lang="c"> <span class="p">}</span> </span>
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<a href="https://salsa.debian.org/med-team/examl/commit/e5ccf5f0d0a1b14399dd1cbc7cd5c71d6c78371d#f613dd0083cd06f090ef45b6eb7946d760b2dfcb"><strong>versionHeader/version.h</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define programName "ExaML"</span></span>
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2
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define programVersion "3.0.2<span class="idiff left right">0</span>"</span></span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define programVersionInt 302<span class="idiff left right">0</span></span></span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define programDate "<span class="idiff left right">January 26</span> 2018"</span></span></pre>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define programVersion "3.0.2<span class="idiff left right">1</span>"</span></span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define programVersionInt 302<span class="idiff left right">1</span></span></span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#define programDate "<span class="idiff left right">May 29</span> 2018"</span></span></pre>
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