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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/racon">Debian Med / racon</a>
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<h4>
Commits:
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<strong><a href="https://salsa.debian.org/med-team/racon/commit/48742472ed79fce3a6a416b60c1bd3916023d12c">48742472</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-06-08T13:31:22+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Initial packaging
</pre>
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<h4>8 changed files:</h4>
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<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
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+
debian/changelog
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<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
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debian/compat
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<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
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+
debian/control
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debian/copyright
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debian/rules
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<a href="#53399f7f2dd7535c43cdcfa511a9c06044a9c238">
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debian/source/format
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debian/upstream/metadata
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debian/watch
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/racon/commit/48742472ed79fce3a6a416b60c1bd3916023d12c#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">racon (1.3.1-1) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Initial release (Closes: #890187)</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Fri, 08 Jun 2018 13:20:51 +0200</span></pre>
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<li id="78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<a href="https://salsa.debian.org/med-team/racon/commit/48742472ed79fce3a6a416b60c1bd3916023d12c#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4"><strong>debian/compat</strong></a>
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<td class="diff-line-num new new_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">11</span></pre>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/racon/commit/48742472ed79fce3a6a416b60c1bd3916023d12c#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Source: racon</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">Uploaders: Cédric Lood <cedric.lood@kuleuven.be>,</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> Andreas Tille <tille@debian.org></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper (>= 11~)</span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">Standards-Version: 4.1.4</span>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/racon</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/racon.git</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">Homepage: https://github.com/isovic/racon</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext">Package: racon</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">Architecture: any</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext">Depends: ${shlibs:Depends}, ${misc:Depends}</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">Description: consensus module for raw de novo DNA assembly of long uncorrected reads</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> Racon is intended as a standalone consensus module to correct raw</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> contigs generated by rapid assembly methods which do not include a</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> consensus step, such as Miniasm.</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> The goal of Racon is to generate genomic consensus which is of similar</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> or better quality compared to the output generated by assembly methods</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> which employ both error correction and consensus steps, while</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> providing a speedup of several times compared to those m</span></pre>
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<a href="https://salsa.debian.org/med-team/racon/commit/48742472ed79fce3a6a416b60c1bd3916023d12c#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">Upstream-Name: racon</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Upstream-Contact: Ivan Sovic <ivan.sovic@irb.hr></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> Mile Sikic <mile.sikic@fer.hr></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">Source: https://github.com/isovic/racon/releases</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">Files: *</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">Copyright: 2016-2018 Ivan Sovic <ivan.sovic@irb.hr>, Mile Sikic</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">License: MIT</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">Files: debian/*</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">Copyright: 2018 Andreas Tille <tille@debian.org></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext">License: MIT</span></pre>
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<a href="https://salsa.debian.org/med-team/racon/commit/48742472ed79fce3a6a416b60c1bd3916023d12c#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">#!/usr/bin/make -f</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"># DH_VERBOSE := 1</span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">export LC_ALL=C.UTF-8</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">include /usr/share/dpkg/default.mk</span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"># this provides:</span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"># DEB_SOURCE: the source package name</span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"># DEB_VERSION: the full version of the package (epoch + upstream vers. + revision)</span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"># DEB_VERSION_EPOCH_UPSTREAM: the package's version without the Debian revision</span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"># DEB_VERSION_UPSTREAM_REVISION: the package's version without the Debian epoch</span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"># DEB_VERSION_UPSTREAM: the package's upstream version</span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"># DEB_DISTRIBUTION: the distribution(s) listed in the current entry of debian/changelog</span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"></span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"># for hardening you might like to uncomment this:</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"># export DEB_BUILD_MAINT_OPTIONS=hardening=+all</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext">%:</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> dh $@</span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext">#get-orig-source:</span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"># . debian/get-orig-source</span></pre>
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<li id="53399f7f2dd7535c43cdcfa511a9c06044a9c238">
<a href="https://salsa.debian.org/med-team/racon/commit/48742472ed79fce3a6a416b60c1bd3916023d12c#53399f7f2dd7535c43cdcfa511a9c06044a9c238"><strong>debian/source/format</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">3.0 (quilt)</span></pre>
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<a href="https://salsa.debian.org/med-team/racon/commit/48742472ed79fce3a6a416b60c1bd3916023d12c#f5606a935d95a2f20059a7ac1136f47b2edadbf6"><strong>debian/upstream/metadata</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Reference:</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"> Author: Robert Vaser and Ivan Sovic and Niranjan Nagarajan and Mile Sikic</span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> Title: Fast and accurate de novo genome assembly from long uncorrected reads</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> Journal: Genome Research</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> Year: 2017</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> Volume: 27</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> Number: 5</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> Pages: 737-746</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> DOI: 10.1101/068122</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> PMID: 28100585</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> URL: https://genome.cshlp.org/content/early/2017/01/18/gr.214270.116</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> eprint: https://genome.cshlp.org/content/early/2017/01/18/gr.214270.116.full.pdf+html</span></pre>
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<a href="https://salsa.debian.org/med-team/racon/commit/48742472ed79fce3a6a416b60c1bd3916023d12c#68ef9f98c01c7eecd4c605cc26048a06f3304b79"><strong>debian/watch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">version=4</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">https://github.com/isovic/racon/releases .*/archive/@ANY_VERSION@@ARCHIVE_EXT@</span></pre>
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