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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/libhmsbeagle">Debian Med / libhmsbeagle</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/libhmsbeagle/commit/d4af106d85f005fd3e8a26fa64545e6c1273901c">d4af106d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-06-23T07:13:55+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upstream is now using proper release tags
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libhmsbeagle/commit/16f186540a4bdd39e6a1955e6cfc1e138d467d2f">16f18654</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-06-23T07:14:13+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 3.0.2+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libhmsbeagle/commit/d5eba9679f4ce62c08cd95b31f899f46926baa93">d5eba967</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-06-23T07:14:23+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/3.0.2+dfsg'
Update to upstream version '3.0.2+dfsg'
with Debian dir 0cefe7ada4e37ef227341b8c18800114fb1c18c6</pre>
</li>
</ul>
<h4>7 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#87db583be5c13c1f7b3c958b10e03d67b6a2ca06">
configure.ac
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
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<li class="file-stats">
<a href="#3907b22584680d10ff1d46dd59be9b1e55da1389">
examples/synthetictest/synthetictest.cpp
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<li class="file-stats">
<a href="#8f242e2e9adefbfad7f2404070c9550c2ab20ddd">
libhmsbeagle/CPU/BeagleCPUImpl.hpp
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<li class="file-stats">
<a href="#784dd8672e1e1821c442f8ff691ea204e68a0c33">
libhmsbeagle/GPU/GPUInterfaceCUDA.cpp
</a>
</li>
<li class="file-stats">
<a href="#2a6c9ae0285fdc82f689967a33982e1b7d7de433">
libhmsbeagle/GPU/kernels/Makefile.am
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="87db583be5c13c1f7b3c958b10e03d67b6a2ca06">
<a href="https://salsa.debian.org/med-team/libhmsbeagle/compare/55d219dafcbbfeccde3af7f7f0a4f9803204a7e9...d5eba9679f4ce62c08cd95b31f899f46926baa93#87db583be5c13c1f7b3c958b10e03d67b6a2ca06"><strong>configure.ac</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="264" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -264,31 +264,6 @@ fi</td>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC264" class="line" lang="plaintext">NVCCFLAGS+=" -Wno-deprecated-gpu-targets"</span>
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<pre style="margin: 0;"> <span id="LC265" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC266" class="line" lang="plaintext"># ------------------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC267" class="line" lang="plaintext"># Setup nvcc ccbin</span>
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<pre style="margin: 0;">-<span id="LC268" class="line" lang="plaintext"># ------------------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC269" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC270" class="line" lang="plaintext">AC_ARG_WITH([nvcc-ccbin],</span>
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<pre style="margin: 0;">-<span id="LC271" class="line" lang="plaintext"> [AS_HELP_STRING([--with-nvcc-ccbin=PATH],[path or executable name of host compiler for nvcc @<:@default=auto@:>@])],</span>
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<pre style="margin: 0;">-<span id="LC272" class="line" lang="plaintext"> [],</span>
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<pre style="margin: 0;">-<span id="LC273" class="line" lang="plaintext"> [with_nvcc_ccbin=auto])</span>
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<pre style="margin: 0;">-<span id="LC274" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC275" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC276" class="line" lang="plaintext">if test "x$with_nvcc_ccbin" != "xno"</span>
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<pre style="margin: 0;">-<span id="LC277" class="line" lang="plaintext">then</span>
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<pre style="margin: 0;">-<span id="LC278" class="line" lang="plaintext"> if test "x$with_nvcc_ccbin" != "xauto"</span>
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<pre style="margin: 0;">-<span id="LC279" class="line" lang="plaintext"> then</span>
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<pre style="margin: 0;">-<span id="LC280" class="line" lang="plaintext"> NVCCFLAGS+=" -ccbin $with_nvcc_ccbin"</span>
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<pre style="margin: 0;">-<span id="LC281" class="line" lang="plaintext"> else</span>
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<pre style="margin: 0;">-<span id="LC282" class="line" lang="plaintext"> case $host_os in</span>
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<pre style="margin: 0;">-<span id="LC283" class="line" lang="plaintext"> *darwin*)</span>
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<pre style="margin: 0;">-<span id="LC284" class="line" lang="plaintext"> NVCCFLAGS+=" -ccbin /usr/bin/clang"</span>
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<pre style="margin: 0;">-<span id="LC285" class="line" lang="plaintext"> ;;</span>
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<pre style="margin: 0;">-<span id="LC286" class="line" lang="plaintext"> esac</span>
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<pre style="margin: 0;">-<span id="LC287" class="line" lang="plaintext"> fi</span>
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<pre style="margin: 0;">-<span id="LC288" class="line" lang="plaintext">fi</span>
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<pre style="margin: 0;">-<span id="LC289" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC290" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC291" class="line" lang="plaintext"># ------------------------------------------------------------------------------</span>
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<pre style="margin: 0;"> <span id="LC267" class="line" lang="plaintext"># Setup SSE</span>
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<pre style="margin: 0;"> <span id="LC268" class="line" lang="plaintext"># ------------------------------------------------------------------------------</span>
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<pre style="margin: 0;"> <span id="LC269" class="line" lang="plaintext"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="358" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -358,7 +333,7 @@ case $host_os in</td>
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<pre style="margin: 0;"> <span id="LC333" class="line" lang="plaintext"> then</span>
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<pre style="margin: 0;"> <span id="LC334" class="line" lang="plaintext"> NVCCFLAGS+=" -m64"</span>
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<pre style="margin: 0;"> <span id="LC335" class="line" lang="plaintext"> AM_CXXFLAGS="$AM_CXXFLAGS -m64"</span>
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<pre style="margin: 0;">-<span id="LC361" class="line" lang="plaintext"> NVCCFLAGS+=" -D_POSIX_C_SOURCE"</span>
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<pre style="margin: 0;">+<span id="LC336" class="line" lang="plaintext"> NVCCFLAGS+=" -D_POSIX_C_SOURCE<span class="idiff left right"> -ccbin /usr/bin/clang</span>"</span>
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<pre style="margin: 0;"> <span id="LC337" class="line" lang="plaintext"> CUDA_LIBS+=" -F/Library/Frameworks -framework CUDA"</span>
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<pre style="margin: 0;"> <span id="LC338" class="line" lang="plaintext"> fi</span>
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<pre style="margin: 0;"> <span id="LC339" class="line" lang="plaintext"></span>
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<a href="https://salsa.debian.org/med-team/libhmsbeagle/compare/55d219dafcbbfeccde3af7f7f0a4f9803204a7e9...d5eba9679f4ce62c08cd95b31f899f46926baa93#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">libhmsbeagle (<span class="idiff left right">2.1.2+git20180619</span>-1) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">libhmsbeagle (<span class="idiff left right">3.0.2+dfsg</span>-1) UNRELEASED; urgency=medium</span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> * New upstream version</span>
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4
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> * Force LC_ALL=C.UTF-8 encoding</span>
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<a href="https://salsa.debian.org/med-team/libhmsbeagle/compare/55d219dafcbbfeccde3af7f7f0a4f9803204a7e9...d5eba9679f4ce62c08cd95b31f899f46926baa93#68ef9f98c01c7eecd4c605cc26048a06f3304b79"><strong>debian/watch</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">version=4</span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">opts="uversionmangle=s/.*date=(\d{4})-(\d\d)-(\d\d)T.*/2.1.2+git$1$2$3/, \</span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"> filenamemangle=s/.*date=(\d{4})-(\d\d)-(\d\d)T.*/2.1.2+git$1$2$3.tar.gz/, \</span>
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5
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> repack,compression=xz" \</span>
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6
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> https://qa.debian.org/cgi-bin/fakeupstream.cgi?upstream=github_commits_package_json/beagle-dev/beagle-lib \</span>
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7
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> .*/archive/(.*\.tar\.gz?.*)</span>
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8
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"></span>
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9
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"># Issue asking for release tags:</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"># https://github.com/beagle-dev/beagle-lib/issues/115</span></pre>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">opts="uversionmangle=s/_/./g,repacksuffix=+dfsg,dversionmangle=s/\+dfsg//g,repack,compression=xz" \</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> https://github.com/beagle-dev/beagle-lib/releases .*/archive/v@ANY_VERSION@@ARCHIVE_EXT@</span></pre>
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<li id="3907b22584680d10ff1d46dd59be9b1e55da1389">
<a href="https://salsa.debian.org/med-team/libhmsbeagle/compare/55d219dafcbbfeccde3af7f7f0a4f9803204a7e9...d5eba9679f4ce62c08cd95b31f899f46926baa93#3907b22584680d10ff1d46dd59be9b1e55da1389"><strong>examples/synthetictest/synthetictest.cpp</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1247" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1247,26 +1247,6 @@ void runBeagle(int resource,</td>
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1247
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<pre style="margin: 0;"> <span id="LC1247" class="line" lang="cpp"> <span class="n" style="color: #333;">sumLogL</span> <span class="o" style="font-weight: 600;">+=</span> <span class="n" style="color: #333;">siteLogLs</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">patternWeights</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">];</span></span>
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1248
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1248
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<pre style="margin: 0;"> <span id="LC1248" class="line" lang="cpp"> <span class="p">}</span></span>
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1249
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1249
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<pre style="margin: 0;"> <span id="LC1249" class="line" lang="cpp"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stdout</span><span class="p">,</span> <span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">sumLogL = %.5f</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span> <span class="n" style="color: #333;">sumLogL</span><span class="p">);</span></span>
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1250
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<pre style="margin: 0;">-<span id="LC1250" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">calcderivs</span><span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1251" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1251
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<pre style="margin: 0;">-<span id="LC1251" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">double</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">siteSecondDerivs</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">double</span><span class="o" style="font-weight: 600;">*</span><span class="p">)</span> <span class="n" style="color: #333;">malloc</span><span class="p">(</span><span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">double</span><span class="p">)</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">nsites</span><span class="p">);</span></span>
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1252
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<pre style="margin: 0;">-<span id="LC1252" class="line" lang="cpp"> <span class="n" style="color: #333;">beagleGetSiteDerivatives</span><span class="p">(</span><span class="n" style="color: #333;">instance</span><span class="p">,</span> <span class="n" style="color: #333;">siteLogLs</span><span class="p">,</span> <span class="n" style="color: #333;">siteSecondDerivs</span><span class="p">);</span></span>
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1253
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<pre style="margin: 0;">-<span id="LC1253" class="line" lang="cpp"> <span class="n" style="color: #333;">sumLogL</span> <span class="o" style="font-weight: 600;">=</span> <span class="mf" style="color: #099;">0.0</span><span class="p">;</span></span>
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1254
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<pre style="margin: 0;">-<span id="LC1254" class="line" lang="cpp"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stdout</span><span class="p">,</span> <span class="s" style="color: #d14;">"site first derivs = "</span><span class="p">);</span></span>
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1255
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<pre style="margin: 0;">-<span id="LC1255" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">nsites</span><span class="p">;</span> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span> <span class="p">{</span></span>
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1256
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<pre style="margin: 0;">-<span id="LC1256" class="line" lang="cpp"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stdout</span><span class="p">,</span> <span class="s" style="color: #d14;">"%.5f </span><span class="se" style="color: #d14;">\t</span><span class="s" style="color: #d14;">"</span><span class="p">,</span> <span class="n" style="color: #333;">siteLogLs</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]);</span></span>
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1257
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<pre style="margin: 0;">-<span id="LC1257" class="line" lang="cpp"> <span class="n" style="color: #333;">sumLogL</span> <span class="o" style="font-weight: 600;">+=</span> <span class="n" style="color: #333;">siteLogLs</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">patternWeights</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">];</span></span>
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1258
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<pre style="margin: 0;">-<span id="LC1258" class="line" lang="cpp"> <span class="p">}</span></span>
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1259
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<pre style="margin: 0;">-<span id="LC1259" class="line" lang="cpp"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stdout</span><span class="p">,</span> <span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">sumFirstDerivs = %.5f</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span> <span class="n" style="color: #333;">sumLogL</span><span class="p">);</span></span>
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1260
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<pre style="margin: 0;">-<span id="LC1260" class="line" lang="cpp"></span>
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1261
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<pre style="margin: 0;">-<span id="LC1261" class="line" lang="cpp"> <span class="n" style="color: #333;">sumLogL</span> <span class="o" style="font-weight: 600;">=</span> <span class="mf" style="color: #099;">0.0</span><span class="p">;</span></span>
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1262
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<pre style="margin: 0;">-<span id="LC1262" class="line" lang="cpp"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stdout</span><span class="p">,</span> <span class="s" style="color: #d14;">"site second derivs = "</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1263" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1263
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<pre style="margin: 0;">-<span id="LC1263" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">nsites</span><span class="p">;</span> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span> <span class="p">{</span></span>
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1264
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<pre style="margin: 0;">-<span id="LC1264" class="line" lang="cpp"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stdout</span><span class="p">,</span> <span class="s" style="color: #d14;">"%.5f </span><span class="se" style="color: #d14;">\t</span><span class="s" style="color: #d14;">"</span><span class="p">,</span> <span class="n" style="color: #333;">siteSecondDerivs</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]);</span></span>
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1265
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<pre style="margin: 0;">-<span id="LC1265" class="line" lang="cpp"> <span class="n" style="color: #333;">sumLogL</span> <span class="o" style="font-weight: 600;">+=</span> <span class="n" style="color: #333;">siteSecondDerivs</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">patternWeights</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">];</span></span>
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1266
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<pre style="margin: 0;">-<span id="LC1266" class="line" lang="cpp"> <span class="p">}</span></span>
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1267
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<pre style="margin: 0;">-<span id="LC1267" class="line" lang="cpp"> <span class="n" style="color: #333;">fprintf</span><span class="p">(</span><span class="n" style="color: #333;">stdout</span><span class="p">,</span> <span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">sumSecondDerivs = %.5f</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span> <span class="n" style="color: #333;">sumLogL</span><span class="p">);</span></span>
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1268
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<pre style="margin: 0;">-<span id="LC1268" class="line" lang="cpp"> <span class="n" style="color: #333;">free</span><span class="p">(</span><span class="n" style="color: #333;">siteSecondDerivs</span><span class="p">);</span></span>
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1269
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<pre style="margin: 0;">-<span id="LC1269" class="line" lang="cpp"> <span class="p">}</span></span>
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1270
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1250
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<pre style="margin: 0;"> <span id="LC1250" class="line" lang="cpp"> <span class="n" style="color: #333;">free</span><span class="p">(</span><span class="n" style="color: #333;">siteLogLs</span><span class="p">);</span></span>
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1251
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<pre style="margin: 0;"> <span id="LC1251" class="line" lang="cpp"> <span class="p">}</span></span>
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1272
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1252
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<pre style="margin: 0;"> <span id="LC1252" class="line" lang="cpp"></span>
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<a href="https://salsa.debian.org/med-team/libhmsbeagle/compare/55d219dafcbbfeccde3af7f7f0a4f9803204a7e9...d5eba9679f4ce62c08cd95b31f899f46926baa93#8f242e2e9adefbfad7f2404070c9550c2ab20ddd"><strong>libhmsbeagle/CPU/BeagleCPUImpl.hpp</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2551,9 +2551,8 @@ void BeagleCPUImpl<BEAGLE_CPU_GENERIC>::calcEdgeLogLikelihoodsSecondDerivByParti</td>
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<pre style="margin: 0;"> <span id="LC2551" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC2552" class="line" lang="cpp"> <span class="n" style="color: #333;">w</span> <span class="o" style="font-weight: 600;">+=</span> <span class="n" style="color: #333;">kTransPaddedStateCount</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC2553" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC2554" class="line" lang="cpp"> <span class="n" style="color: #333;">v</span> <span class="o" style="font-weight: 600;">+=</span> <span class="n" style="color: #333;">kPartialsPaddedStateCount</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC2554" class="line" lang="cpp"> <span class="n" style="color: #333;">v</span> <span class="o" style="font-weight: 600;">+=</span> <span class="p"><span class="idiff left">((</span></span><span class="n" style="color: #333;"><span class="idiff">kPatternCount</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">-</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">endPattern</span></span><span class="p"><span class="idiff">)</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">+</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">startPattern</span></span><span class="p"><span class="idiff">)</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">*</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">kPartialsPaddedStateCount</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC2555" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC2556" class="line" lang="cpp"> <span class="n" style="color: #333;">v</span> <span class="o" style="font-weight: 600;">+=</span> <span class="p">((</span><span class="n" style="color: #333;">kPatternCount</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">endPattern</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">startPattern</span><span class="p">)</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">kPartialsPaddedStateCount</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC2556" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC2557" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC2558" class="line" lang="cpp"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span> <span class="c1" style="color: #998; font-style: italic;">// Integrate against a partial at the child</span></span>
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<a href="https://salsa.debian.org/med-team/libhmsbeagle/compare/55d219dafcbbfeccde3af7f7f0a4f9803204a7e9...d5eba9679f4ce62c08cd95b31f899f46926baa93#784dd8672e1e1821c442f8ff691ea204e68a0c33"><strong>libhmsbeagle/GPU/GPUInterfaceCUDA.cpp</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -203,7 +203,7 @@ int GPUInterface::Initialize() {</td>
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<pre style="margin: 0;"> <span id="LC203" class="line" lang="cpp"> <span class="n" style="color: #333;">SAFE_CUDA</span><span class="p">(</span><span class="n" style="color: #333;">cuDeviceGet</span><span class="p">(</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">tmpCudaDevice</span><span class="p">,</span> <span class="n" style="color: #333;">i</span><span class="p">));</span></span>
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<pre style="margin: 0;"> <span id="LC204" class="line" lang="cpp"> <span class="n" style="color: #333;">SAFE_CUDA</span><span class="p">(</span><span class="n" style="color: #333;">cuDeviceGetAttribute</span><span class="p">(</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">capabilityMajor</span><span class="p">,</span> <span class="n" style="color: #333;">CU_DEVICE_ATTRIBUTE_COMPUTE_CAPABILITY_MAJOR</span><span class="p">,</span> <span class="n" style="color: #333;">tmpCudaDevice</span><span class="p">));</span></span>
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<pre style="margin: 0;"> <span id="LC205" class="line" lang="cpp"> <span class="n" style="color: #333;">SAFE_CUDA</span><span class="p">(</span><span class="n" style="color: #333;">cuDeviceGetAttribute</span><span class="p">(</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">capabilityMinor</span><span class="p">,</span> <span class="n" style="color: #333;">CU_DEVICE_ATTRIBUTE_COMPUTE_CAPABILITY_MINOR</span><span class="p">,</span> <span class="n" style="color: #333;">tmpCudaDevice</span><span class="p">));</span></span>
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<pre style="margin: 0;">-<span id="LC206" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">capabilityMajor</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">>=</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff">3</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&&</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">capabilityMinor</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">!=</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff right">9999</span></span><span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC206" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(<span class="idiff left">(</span></span><span class="n" style="color: #333;"><span class="idiff">capabilityMajor</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">></span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff">1</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&&</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">capabilityMinor</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">!=</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff">9999</span></span><span class="p"><span class="idiff">)</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">||</span></span><span class="idiff"> </span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">capabilityMajor</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">==</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff">1</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&&</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">capabilityMinor</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">></span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff">0</span></span><span class="p"><span class="idiff right">)</span>)</span> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC207" class="line" lang="cpp"> <span class="n" style="color: #333;">resourceMap</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">insert</span><span class="p">(</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">make_pair</span><span class="p">(</span><span class="n" style="color: #333;">currentDevice</span><span class="o" style="font-weight: 600;">++</span><span class="p">,</span> <span class="n" style="color: #333;">i</span><span class="p">));</span></span>
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<pre style="margin: 0;"> <span id="LC208" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC209" class="line" lang="cpp"> <span class="p">}</span></span>
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<a href="https://salsa.debian.org/med-team/libhmsbeagle/compare/55d219dafcbbfeccde3af7f7f0a4f9803204a7e9...d5eba9679f4ce62c08cd95b31f899f46926baa93#2a6c9ae0285fdc82f689967a33982e1b7d7de433"><strong>libhmsbeagle/GPU/kernels/Makefile.am</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -19,17 +19,17 @@ BeagleCUDA_kernels.h: Makefile kernels4.cu kernelsX.cu kernelsAll.cu ../GPUImplD</td>
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19
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="make"><span class="c" style="color: #998; font-style: italic;">#</span></span>
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20
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="make"><span class="c" style="color: #998; font-style: italic;"># Compile 4-state model</span></span>
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21
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="make"> <span class="err" style="color: #a61717; background-color: #e3d2d2;">$(NVCC)</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">-o</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">BeagleCUDA_kernels.ptx</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">--default-stream</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">per-thread</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">-ptx</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">-DCUDA</span> <span class="nv" style="color: teal;">-DSTATE_COUNT</span><span class="o" style="font-weight: 600;">=</span>4 <span class="se" style="color: #d14;">\</span></span>
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<td class="diff-line-num old old_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
22
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="make"> <span class="nv" style="color: teal;">$(srcdir)</span>/kernels4.cu <span class="nv" style="color: teal;">$(NVCCFLAGS)</span> <span class="nt" style="color: navy;">-DHAVE_CONFIG_H</span> <span class="nv" style="color: teal;">$(INCLUDE_DIRS)</span><span class="idiff left"> </span><span class="o" style="font-weight: 600;"><span class="idiff">||</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">{</span></span><span class="idiff"> </span><span class="se" style="color: #d14;"><span class="idiff">\r</span></span><span class="idiff">m BeagleCUDA_kernels.h</span><span class="p"><span class="idiff">;</span></span><span class="idiff"> </span><span class="nb" style="color: #0086b3;"><span class="idiff">exit</span></span><span class="p"><span class="idiff">;</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">}</span></span><span class="p"><span class="idiff">;</span></span><span class="idiff"> </span><span class="se" style="color: #d14;"><span class="idiff right">\</span></span></span>
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23
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="make"> <span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"#define KERNELS_STRING_SP_4 </span><span class="se" style="color: #d14;">\"</span><span class="s2" style="color: #d14;">"</span> | <span class="nb" style="color: #0086b3;">sed</span> <span class="s1" style="color: #d14;">'s/$$/\\n\\/'</span> <span class="o" style="font-weight: 600;">>></span> BeagleCUDA_kernels.h<span class="p"><span class="idiff left">;</span></span><span class="idiff"> </span><span class="se" style="color: #d14;"><span class="idiff right">\</span></span></span>
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24
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="make"> <span class="nb" style="color: #0086b3;">cat </span>BeagleCUDA_kernels.ptx | <span class="nb" style="color: #0086b3;">sed</span> <span class="s1" style="color: #d14;">'s/\"/\\"/g'</span> | <span class="nb" style="color: #0086b3;">sed</span> <span class="s1" style="color: #d14;">'s/$$/\\n\\/'</span> <span class="o" style="font-weight: 600;">>></span> BeagleCUDA_kernels.h<span class="p"><span class="idiff left">;</span></span><span class="idiff"> </span><span class="se" style="color: #d14;"><span class="idiff right">\</span></span></span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="make"> <span class="nv" style="color: teal;">$(srcdir)</span>/kernels4.cu <span class="nv" style="color: teal;">$(NVCCFLAGS)</span> <span class="nt" style="color: navy;">-DHAVE_CONFIG_H</span> <span class="nv" style="color: teal;">$(INCLUDE_DIRS)</span></span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="make"> <span class="err" style="color: #a61717; background-color: #e3d2d2;">echo</span> <span class="s2" style="color: #d14;">"#define KERNELS_STRING_SP_4 \""</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">|</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">sed</span> <span class="s1" style="color: #d14;">'s/$$/\\n\\/'</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">>></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">BeagleCUDA_kernels.h</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="make"> <span class="err" style="color: #a61717; background-color: #e3d2d2;">cat</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">BeagleCUDA_kernels.ptx</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">|</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">sed</span> <span class="s1" style="color: #d14;">'s/\"/\\"/g'</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">|</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">sed</span> <span class="s1" style="color: #d14;">'s/$$/\\n\\/'</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">>></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">BeagleCUDA_kernels.h</span></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="make"> <span class="err" style="color: #a61717; background-color: #e3d2d2;">echo</span> <span class="s2" style="color: #d14;">"\""</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">>></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">BeagleCUDA_kernels.h</span></span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="make"><span class="c" style="color: #998; font-style: italic;">#</span></span>
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27
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="make"><span class="c" style="color: #998; font-style: italic;"># HERE IS THE LOOP FOR GENERIC KERNELS</span></span>
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28
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="make"><span class="c" style="color: #998; font-style: italic;">#</span></span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="make"> <span class="err" style="color: #a61717; background-color: #e3d2d2;">for</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">s</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">in</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">$(STATE_COUNT_LIST);</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">do</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span></span>
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30
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="make"> <span class="err" style="color: #a61717; background-color: #e3d2d2;">echo</span> <span class="s2" style="color: #d14;">"Making state count = $$s"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">;</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span></span>
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31
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="make"> <span class="err" style="color: #a61717; background-color: #e3d2d2;">$(NVCC)</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">-o</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">BeagleCUDA_kernels.ptx</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">--default-stream</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">per-thread</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">-ptx</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">-DCUDA</span> <span class="nv" style="color: teal;">-DSTATE_COUNT</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: teal;">$$</span>s <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="make"> <span class="nv" style="color: teal;">$(srcdir)</span>/kernelsX.cu <span class="nv" style="color: teal;">$(NVCCFLAGS)</span> <span class="nt" style="color: navy;">-DHAVE_CONFIG_H</span> <span class="nv" style="color: teal;">$(INCLUDE_DIRS)</span><span class="idiff left"> </span><span class="o" style="font-weight: 600;"><span class="idiff">||</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">{</span></span><span class="idiff"> </span><span class="se" style="color: #d14;"><span class="idiff">\r</span></span><span class="idiff">m BeagleCUDA_kernels.h</span><span class="p"><span class="idiff">;</span></span><span class="idiff"> </span><span class="nb" style="color: #0086b3;"><span class="idiff">exit</span></span><span class="p"><span class="idiff">;</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff right">}</span></span><span class="p">;</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="make"> <span class="err" style="color: #a61717; background-color: #e3d2d2;"><span class="idiff left right">(</span>$(NVCC)</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">-o</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">BeagleCUDA_kernels.ptx</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">--default-stream</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">per-thread</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">-ptx</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">-DCUDA</span> <span class="nv" style="color: teal;">-DSTATE_COUNT</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: teal;">$$</span>s <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="make"> <span class="nv" style="color: teal;">$(srcdir)</span>/kernelsX.cu <span class="nv" style="color: teal;">$(NVCCFLAGS)</span> <span class="nt" style="color: navy;">-DHAVE_CONFIG_H</span> <span class="nv" style="color: teal;">$(INCLUDE_DIRS)</span><span class="o" style="font-weight: 600;"><span class="idiff left">)</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">||</span></span><span class="idiff"> </span><span class="nb" style="color: #0086b3;"><span class="idiff right">exit</span></span><span class="p">;</span> <span class="se" style="color: #d14;">\</span></span>
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33
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="make"> <span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"#define KERNELS_STRING_SP_</span><span class="nv" style="color: teal;">$$</span><span class="s2" style="color: #d14;">s </span><span class="se" style="color: #d14;">\"</span><span class="s2" style="color: #d14;">"</span> | <span class="nb" style="color: #0086b3;">sed</span> <span class="s1" style="color: #d14;">'s/$$/\\n\\/'</span> <span class="o" style="font-weight: 600;">>></span> BeagleCUDA_kernels.h<span class="p">;</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="make"> <span class="nb" style="color: #0086b3;">cat </span>BeagleCUDA_kernels.ptx | <span class="nb" style="color: #0086b3;">sed</span> <span class="s1" style="color: #d14;">'s/\"/\\"/g'</span> | <span class="nb" style="color: #0086b3;">sed</span> <span class="s1" style="color: #d14;">'s/$$/\\n\\/'</span> <span class="o" style="font-weight: 600;">>></span> BeagleCUDA_kernels.h<span class="p">;</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="make"> <span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"</span><span class="se" style="color: #d14;">\"</span><span class="s2" style="color: #d14;">"</span> <span class="o" style="font-weight: 600;">>></span> BeagleCUDA_kernels.h<span class="p">;</span> <span class="se" style="color: #d14;">\</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="40" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="40" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -40,17 +40,17 @@ BeagleCUDA_kernels.h: Makefile kernels4.cu kernelsX.cu kernelsAll.cu ../GPUImplD</td>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="make"><span class="c" style="color: #998; font-style: italic;">#</span></span>
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41
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41
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="make"><span class="c" style="color: #998; font-style: italic;"># Compile 4-state model</span></span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="make"> <span class="err" style="color: #a61717; background-color: #e3d2d2;">$(NVCC)</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">-o</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">BeagleCUDA_kernels.ptx</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">--default-stream</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">per-thread</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">-ptx</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">-DCUDA</span> <span class="nv" style="color: teal;">-DSTATE_COUNT</span><span class="o" style="font-weight: 600;">=</span>4 <span class="nt" style="color: navy;">-DDOUBLE_PRECISION</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="make"> <span class="nv" style="color: teal;">$(srcdir)</span>/kernels4.cu <span class="nv" style="color: teal;">$(NVCCFLAGS)</span> <span class="nt" style="color: navy;">-DHAVE_CONFIG_H</span> <span class="nv" style="color: teal;">$(INCLUDE_DIRS)</span><span class="idiff left"> </span><span class="o" style="font-weight: 600;"><span class="idiff">||</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">{</span></span><span class="idiff"> </span><span class="se" style="color: #d14;"><span class="idiff">\r</span></span><span class="idiff">m BeagleCUDA_kernels.h</span><span class="p"><span class="idiff">;</span></span><span class="idiff"> </span><span class="nb" style="color: #0086b3;"><span class="idiff">exit</span></span><span class="p"><span class="idiff">;</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">}</span></span><span class="p"><span class="idiff">;</span></span><span class="idiff"> </span><span class="se" style="color: #d14;"><span class="idiff right">\</span></span></span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="make"> <span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"#define KERNELS_STRING_DP_4 </span><span class="se" style="color: #d14;">\"</span><span class="s2" style="color: #d14;">"</span> | <span class="nb" style="color: #0086b3;">sed</span> <span class="s1" style="color: #d14;">'s/$$/\\n\\/'</span> <span class="o" style="font-weight: 600;">>></span> BeagleCUDA_kernels.h<span class="p"><span class="idiff left">;</span></span><span class="idiff"> </span><span class="se" style="color: #d14;"><span class="idiff right">\</span></span></span>
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="make"> <span class="nb" style="color: #0086b3;">cat </span>BeagleCUDA_kernels.ptx | <span class="nb" style="color: #0086b3;">sed</span> <span class="s1" style="color: #d14;">'s/\"/\\"/g'</span> | <span class="nb" style="color: #0086b3;">sed</span> <span class="s1" style="color: #d14;">'s/$$/\\n\\/'</span> <span class="o" style="font-weight: 600;">>></span> BeagleCUDA_kernels.h<span class="p"><span class="idiff left">;</span></span><span class="idiff"> </span><span class="se" style="color: #d14;"><span class="idiff right">\</span></span></span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="make"> <span class="nv" style="color: teal;">$(srcdir)</span>/kernels4.cu <span class="nv" style="color: teal;">$(NVCCFLAGS)</span> <span class="nt" style="color: navy;">-DHAVE_CONFIG_H</span> <span class="nv" style="color: teal;">$(INCLUDE_DIRS)</span></span>
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44
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="make"> <span class="err" style="color: #a61717; background-color: #e3d2d2;">echo</span> <span class="s2" style="color: #d14;">"#define KERNELS_STRING_DP_4 \""</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">|</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">sed</span> <span class="s1" style="color: #d14;">'s/$$/\\n\\/'</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">>></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">BeagleCUDA_kernels.h</span></span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="make"> <span class="err" style="color: #a61717; background-color: #e3d2d2;">cat</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">BeagleCUDA_kernels.ptx</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">|</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">sed</span> <span class="s1" style="color: #d14;">'s/\"/\\"/g'</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">|</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">sed</span> <span class="s1" style="color: #d14;">'s/$$/\\n\\/'</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">>></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">BeagleCUDA_kernels.h</span></span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="make"> <span class="err" style="color: #a61717; background-color: #e3d2d2;">echo</span> <span class="s2" style="color: #d14;">"\""</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">>></span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">BeagleCUDA_kernels.h</span></span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="make"><span class="c" style="color: #998; font-style: italic;">#</span></span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="make"><span class="c" style="color: #998; font-style: italic;"># HERE IS THE LOOP FOR GENERIC KERNELS</span></span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="make"><span class="c" style="color: #998; font-style: italic;">#</span></span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="make"> <span class="err" style="color: #a61717; background-color: #e3d2d2;">for</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">s</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">in</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">$(STATE_COUNT_LIST);</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">do</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span></span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="make"> <span class="err" style="color: #a61717; background-color: #e3d2d2;">echo</span> <span class="s2" style="color: #d14;">"Making state count = $$s"</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">;</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span></span>
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="make"> <span class="err" style="color: #a61717; background-color: #e3d2d2;">$(NVCC)</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">-o</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">BeagleCUDA_kernels.ptx</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">--default-stream</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">per-thread</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">-ptx</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">-DCUDA</span> <span class="nv" style="color: teal;">-DSTATE_COUNT</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: teal;">$$</span>s <span class="nt" style="color: navy;">-DDOUBLE_PRECISION</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="make"> <span class="nv" style="color: teal;">$(srcdir)</span>/kernelsX.cu <span class="nv" style="color: teal;">$(NVCCFLAGS)</span> <span class="nt" style="color: navy;">-DHAVE_CONFIG_H</span> <span class="nv" style="color: teal;">$(INCLUDE_DIRS)</span><span class="idiff left"> </span><span class="o" style="font-weight: 600;"><span class="idiff">||</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">{</span></span><span class="idiff"> </span><span class="se" style="color: #d14;"><span class="idiff">\r</span></span><span class="idiff">m BeagleCUDA_kernels.h</span><span class="p"><span class="idiff">;</span></span><span class="idiff"> </span><span class="nb" style="color: #0086b3;"><span class="idiff">exit</span></span><span class="p"><span class="idiff">;</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff right">}</span></span><span class="p">;</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="make"> <span class="err" style="color: #a61717; background-color: #e3d2d2;"><span class="idiff left right">(</span>$(NVCC)</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">-o</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">BeagleCUDA_kernels.ptx</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">--default-stream</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">per-thread</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">-ptx</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">-DCUDA</span> <span class="nv" style="color: teal;">-DSTATE_COUNT</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: teal;">$$</span>s <span class="nt" style="color: navy;">-DDOUBLE_PRECISION</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="make"> <span class="nv" style="color: teal;">$(srcdir)</span>/kernelsX.cu <span class="nv" style="color: teal;">$(NVCCFLAGS)</span> <span class="nt" style="color: navy;">-DHAVE_CONFIG_H</span> <span class="nv" style="color: teal;">$(INCLUDE_DIRS)</span><span class="o" style="font-weight: 600;"><span class="idiff left">)</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">||</span></span><span class="idiff"> </span><span class="nb" style="color: #0086b3;"><span class="idiff right">exit</span></span><span class="p">;</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="make"> <span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"#define KERNELS_STRING_DP_</span><span class="nv" style="color: teal;">$$</span><span class="s2" style="color: #d14;">s </span><span class="se" style="color: #d14;">\"</span><span class="s2" style="color: #d14;">"</span> | <span class="nb" style="color: #0086b3;">sed</span> <span class="s1" style="color: #d14;">'s/$$/\\n\\/'</span> <span class="o" style="font-weight: 600;">>></span> BeagleCUDA_kernels.h<span class="p">;</span> <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="make"> <span class="nb" style="color: #0086b3;">cat </span>BeagleCUDA_kernels.ptx | <span class="nb" style="color: #0086b3;">sed</span> <span class="s1" style="color: #d14;">'s/\"/\\"/g'</span> | <span class="nb" style="color: #0086b3;">sed</span> <span class="s1" style="color: #d14;">'s/$$/\\n\\/'</span> <span class="o" style="font-weight: 600;">>></span> BeagleCUDA_kernels.h<span class="p">;</span> <span class="se" style="color: #d14;">\</span></span>
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56
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="make"> <span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"</span><span class="se" style="color: #d14;">\"</span><span class="s2" style="color: #d14;">"</span> <span class="o" style="font-weight: 600;">>></span> BeagleCUDA_kernels.h<span class="p">;</span> <span class="se" style="color: #d14;">\</span></span>
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