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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/pbseqlib">Debian Med / pbseqlib</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbseqlib/commit/dec8ce2ac6f98b4870c0a50e93a0beee31b6e130">dec8ce2a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-06-26T08:40:18+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upstream has tagged a release so use proper watch file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbseqlib/commit/c193ee9e55c7a6f19f724a5c09988de74c370a72">c193ee9e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-06-26T08:45:49+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Exclude binary tools from upstream tarball
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbseqlib/commit/004f0d13f1776a8ff54dfe69c753c1f50bea18d0">004f0d13</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-06-26T08:49:25+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 5.3.1+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbseqlib/commit/eaf5ee0c0768b3026e8f2a16a4ae60fcd514a679">eaf5ee0c</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-06-26T08:49:29+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/5.3.1+dfsg'
Update to upstream version '5.3.1+dfsg'
with Debian dir 2e9efbe8288b40eab7d2a037d26e79001735a889</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbseqlib/commit/c90ce2344cb40b484998fb2120208e4d6086f22d">c90ce234</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-06-26T09:12:56+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbseqlib/commit/c23b113c11c60b92ac6815eed5e1be2bf2ab18ad">c23b113c</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-06-26T09:31:09+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set PREFIX_INC=.. to make sure header files will be found
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbseqlib/commit/51880cf42b13a7c2650f1707becc2765502eabb0">51880cf4</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-06-26T09:38:10+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Re-activate uncommented section of patch
</pre>
</li>
</ul>
<h4>19 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#01a718df87a96135eb956401504e555421dc5a3d">
<span class="new-file">
+
.clang-format
</span>
</a>
</li>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
</a>
</li>
<li class="file-stats">
<a href="#7445606fbf8f3683cd42bdc54b05d7a0bc2dfc44">
<span class="new-file">
+
.gitmodules
</span>
</a>
</li>
<li class="file-stats">
<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
<span class="new-file">
+
CMakeLists.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#8c540ac8bd6984bfde6e7cc27eac36899c3c7fcf">
<span class="new-file">
+
DEVELOPER.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#e1784fc75e2697adcaab1913f0154bc4c6b2f70d">
alignment/MappingMetrics.cpp
</a>
</li>
<li class="file-stats">
<a href="#5d27968b93e9f3a83cd9c45c9c8be7d3b4dad107">
alignment/MappingMetrics.hpp
</a>
</li>
<li class="file-stats">
<a href="#838aa82e9824ff16822210c89589656ea25abe5c">
alignment/algorithms/alignment/AffineGuidedAlign.hpp
</a>
</li>
<li class="file-stats">
<a href="#f1b188ab1b4951161cd536140965ac23b16f6100">
alignment/algorithms/alignment/AffineKBandAlign.hpp
</a>
</li>
<li class="file-stats">
<a href="#d1a7e73a75fb7a9859939d409219b165f8cee25e">
alignment/algorithms/alignment/AlignmentFormats.hpp
</a>
</li>
<li class="file-stats">
<a href="#db18f98fee78e9bcd4016999ea1265de24287cfb">
alignment/algorithms/alignment/AlignmentUtils.cpp
</a>
</li>
<li class="file-stats">
<a href="#32f12bb6311a8877572a904ecc74be9fdb15ab01">
alignment/algorithms/alignment/AlignmentUtils.hpp
</a>
</li>
<li class="file-stats">
<a href="#176ca7a4ab35b484d30a8ccb3a17060e3d12f694">
alignment/algorithms/alignment/AlignmentUtilsImpl.hpp
</a>
</li>
<li class="file-stats">
<a href="#6e3795bff69274fc38ff9ad9fae5ca44a0f8ff3a">
alignment/algorithms/alignment/BaseScoreFunction.cpp
</a>
</li>
<li class="file-stats">
<a href="#d116db2eb189d24c7c0033cc5173a347b1e110a8">
alignment/algorithms/alignment/BaseScoreFunction.hpp
</a>
</li>
<li class="file-stats">
<a href="#a009f7c6cfc8413a8cd3d1a9f07c038aacc6c711">
alignment/algorithms/alignment/DistanceMatrixScoreFunction.hpp
</a>
</li>
<li class="file-stats">
<a href="#08ea844daf7dd6d9441e1b6b0e6cb8bcd42e888b">
alignment/algorithms/alignment/DistanceMatrixScoreFunctionImpl.hpp
</a>
</li>
<li class="file-stats">
<a href="#673b62112b143ded59db8eb813d7df60aec083ed">
alignment/algorithms/alignment/ExtendAlign.cpp
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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