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<h3>
Tomasz Buchert pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/mothur">Debian Med / mothur</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/mothur/commit/936db583bafb4f31e6a3084cc88d0bd093b467f8">936db583</a></strong>
<div>
<span>by Tomasz Buchert</span>
<i>at 2018-06-16T15:57:21+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.40.4</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/mothur/commit/4e6744bc595bd77d0eb75905b7f736dc2895ad0b">4e6744bc</a></strong>
<div>
<span>by Tomasz Buchert</span>
<i>at 2018-06-26T18:03:52+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.40.5</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
</a>
</li>
<li class="file-stats">
<a href="#8b67dc09b93b38e95da2a54036fa1db5b207cc5b">
Mothur.xcodeproj/project.pbxproj
</a>
</li>
<li class="file-stats">
<a href="#932f2a74947ebd9a07f43bfc002cddd6cbf2c1ef">
source/calculators/ace.h
</a>
</li>
<li class="file-stats">
<a href="#5dbb6f744154fa9dd45799ec59c8a610ef72afe4">
source/classifier/aligntree.h
</a>
</li>
<li class="file-stats">
<a href="#94a11bb07b0f7c6234f78a8b2fb038084aec6f1e">
source/commands/chimeravsearchcommand.cpp
</a>
</li>
<li class="file-stats">
<a href="#81b6ba39c5e7f3b189237e947075b89c65d7111a">
source/commands/classifyseqscommand.cpp
</a>
</li>
<li class="file-stats">
<a href="#3cff12345b86ea231aa2d98a0e0d16bcd237c155">
source/commands/clustercommand.cpp
</a>
</li>
<li class="file-stats">
<a href="#27cd2812a0146ceaf76a109352c1a55731d5fb67">
source/commands/clustercommand.h
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</li>
<li class="file-stats">
<a href="#0f0be8036b9005124d213c4d198dcd43f4c8d4ae">
source/commands/clusterdoturcommand.cpp
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</li>
<li class="file-stats">
<a href="#55835e1bc5958228f5f7bfddfc7cfd7c4eba0f6b">
source/commands/clusterdoturcommand.h
</a>
</li>
<li class="file-stats">
<a href="#affcff419dd1c7c8f8a6bb508be39fcb4712dd75">
source/commands/clustersplitcommand.cpp
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</li>
<li class="file-stats">
<a href="#2eb679304e74ef8ab32e08ee8d5984c6e1b831bd">
source/commands/getlineagecommand.cpp
</a>
</li>
<li class="file-stats">
<a href="#dfff5cd9f10e088ef191fbef1cc03f6f0a8236c2">
source/commands/getmetacommunitycommand.cpp
</a>
</li>
<li class="file-stats">
<a href="#f179565b0222d729ba14d4ccb444f9b1c1e38dc2">
source/commands/makecontigscommand.cpp
</a>
</li>
<li class="file-stats">
<a href="#69e32ad0eb8b91cbda55255312c2f8d251c6f5be">
source/commands/makecontigscommand.h
</a>
</li>
<li class="file-stats">
<a href="#10318a1d06809dc6f93dc86d95adc419de861d95">
source/commands/mgclustercommand.cpp
</a>
</li>
<li class="file-stats">
<a href="#7328abc13820c1316ccd62a9b5ba721004369c42">
source/commands/mgclustercommand.h
</a>
</li>
<li class="file-stats">
<a href="#c8c1854baac4afbb3a2d471234bcda1d4ec7e32c">
source/commands/nocommands.cpp
</a>
</li>
<li class="file-stats">
<a href="#76577abb23edfca52c586da95321aea2eb915fe3">
source/commands/pcrseqscommand.cpp
</a>
</li>
<li class="file-stats">
<a href="#1d632589c905d230e5dbd0ca35edbeebde670dcc">
source/commands/preclustercommand.cpp
</a>
</li>
<li class="file-stats">
<a href="#e5af795c6cd2a9128814a4ae1628291b46ed4359">
source/commands/screenseqscommand.cpp
</a>
</li>
<li class="file-stats">
<a href="#a9be407b91b7927cbc6562afe5cc398158c3624a">
source/commands/seqerrorcommand.cpp
</a>
</li>
<li class="file-stats">
<a href="#307eb22b393b6e24c84a1f5f781bb1de30adfcfd">
source/commands/trimseqscommand.cpp
</a>
</li>
<li class="file-stats">
<a href="#3f2791a1dd0174d6a4d6f052fb6e4369c1cab934">
<span class="new-file">
+
source/datastructures/compare.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#e5a372960b25c35bb8a89d835e083c418aea26ec">
source/datastructures/listvector.hpp
</a>
</li>
<li class="file-stats">
<a href="#cb78b9bb7be1e9dd9bd998da4f7e4205296ce046">
source/datastructures/qualityscores.cpp
</a>
</li>
<li class="file-stats">
<a href="#e1a5eeebaa1691cb8099ec250c2eb9fb7d8cbe30">
source/datastructures/qualityscores.h
</a>
</li>
<li class="file-stats">
<a href="#cfcc03d9e7b58095641b85b3600a06cb4ba27857">
source/datastructures/sharedrabundvectors.cpp
</a>
</li>
<li class="file-stats">
<a href="#40d5ff05ee10299df40c9c58744d7e300ad5e565">
source/engine.cpp
</a>
</li>
<li class="file-stats">
<a href="#31220a21993ec2d9642c9ffa5b3534e69268cf00">
source/engine.hpp
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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