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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/fastlink">Debian Med / fastlink</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/fastlink/commit/acbf75fa0fad2adf6eaa83a118c19d94207cc000">acbf75fa</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-07-05T11:07:46+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Secure URI in Homepage
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/fastlink/commit/ac0bef03722cff78138b0c8d0cf92a93cf37398e">ac0bef03</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-07-05T11:13:03+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debian/get-orig-source: use https instead of ftp
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/fastlink/commit/f954ec5ea3dc0cc2d72529734f7092dbf54ce198">f954ec5e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-07-05T11:23:38+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Be more cross-building friendly
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/fastlink/commit/6e1a733358e8484bb4f8976dfad4c434fab65109">6e1a7333</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-07-05T11:27:15+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">hardening=+all
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/fastlink/commit/2fd30d2520abe1ed1ed966e128a6de0cb93a1d26">2fd30d25</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-07-05T11:27:43+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Enable debug symbols
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/fastlink/commit/6e9befecf299d92b664c74e71d9fd32397702be7">6e9befec</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-07-05T11:28:19+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debhelper 11
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/fastlink/commit/6693548f5a70ba5a11b817b26c4a9ad35bb54c2e">6693548f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-07-05T11:28:27+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Point Vcs fields to salsa.debian.org
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/fastlink/commit/5d19ba826bdd1b530db0888e916d048a5c1dce3e">5d19ba82</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-07-05T11:28:27+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.1.4
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/fastlink/commit/aa5879be01176e45ae2fa31b1cf0029d6e90ebca">aa5879be</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-07-05T11:31:31+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adapt doc-base files to new location of docs (caused by debhelper 11)
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/fastlink/commit/8efd91c50b7ef77da6756aa9482cbb359a3a6b76">8efd91c5</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-07-05T11:32:59+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Revert adding -g since it does not help to create debug symbols
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/fastlink/commit/aa13d344c3e7f7c648ee2dc123a7ceff6c0955b9">aa13d344</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-07-05T11:36:02+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>15 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
debian/compat
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#ffaee2b50a43d0b7e195d61e4cfc213a146ebbcd">
debian/fastlink-doc.doc-base.alleles
</a>
</li>
<li class="file-stats">
<a href="#d677a4f4c8b1e77608c9a47d0737763307cfbc05">
debian/fastlink-doc.doc-base.autoselect
</a>
</li>
<li class="file-stats">
<a href="#9b60176dd743fa7bd016c9185bc5ea807ab91935">
debian/fastlink-doc.doc-base.avoid-recomp
</a>
</li>
<li class="file-stats">
<a href="#6336f4287caac9d3e65de7decbfdca4d5930fc7c">
debian/fastlink-doc.doc-base.fastlink
</a>
</li>
<li class="file-stats">
<a href="#45464516683f0d214f29745c5af9c7bf0d9d967a">
debian/fastlink-doc.doc-base.loops
</a>
</li>
<li class="file-stats">
<a href="#cb562a5150b45a6ec41c27768676e02f65df0381">
debian/fastlink-doc.doc-base.parallelization
</a>
</li>
<li class="file-stats">
<a href="#a8ac34f3aaf06ebde78467ef8e4b3edf91c0f302">
debian/fastlink-doc.doc-base.parallelization2
</a>
</li>
<li class="file-stats">
<a href="#f67c67336a2b65601c383627dabc025dc7fe55ed">
debian/fastlink-doc.doc-base.random
</a>
</li>
<li class="file-stats">
<a href="#05caf8e95ed1289487b0f5d18b99d6e08dc53202">
debian/fastlink-doc.doc-base.traverse
</a>
</li>
<li class="file-stats">
<a href="#ee2308943b57f6491b02137df98fed1524525642">
debian/fastlink-doc.doc-base.unknown
</a>
</li>
<li class="file-stats">
<a href="#fc932f0eaa389a4e2b93916f3995aae4019ea823">
debian/get-orig-source
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/fastlink/compare/1a96ca2070c7031c15386de3b73657f671b4e5de...aa13d344c3e7f7c648ee2dc123a7ceff6c0955b9#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<td class="diff-line-num new new_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">fastlink (4.1P-fix100+dfsg-2) unstable; urgency=medium</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Secure URI in Homepage</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * debian/get-orig-source: use https instead of ftp</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * d/rules: Be more cross-building friendly</span>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * hardening=+all</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * debhelper 11</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> * Point Vcs fields to salsa.debian.org</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> * Standards-Version: 4.1.4</span>
</pre>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Thu, 05 Jul 2018 11:35:01 +0200</span>
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<td class="diff-line-num new new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"></span>
</pre>
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<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">fastlink (4.1P-fix100+dfsg-1) unstable; urgency=low</span>
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<td class="diff-line-num new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> * New upstream patch level</span>
</pre>
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</li>
<li id="78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<a href="https://salsa.debian.org/med-team/fastlink/compare/1a96ca2070c7031c15386de3b73657f671b4e5de...aa13d344c3e7f7c648ee2dc123a7ceff6c0955b9#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4"><strong>debian/compat</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext"><span class="idiff left right">9</span></span></pre>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext"><span class="idiff left right">11</span></span></pre>
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<a href="https://salsa.debian.org/med-team/fastlink/compare/1a96ca2070c7031c15386de3b73657f671b4e5de...aa13d344c3e7f7c648ee2dc123a7ceff6c0955b9#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4,11 +4,11 @@ Uploaders: Andreas Tille <tille@debian.org>,</td>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> Charles Plessy <plessy@debian.org></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper (>= <span class="idiff left right">9</span>)</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">Standards-Version: <span class="idiff left right">3.9.6</span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">Vcs-Browser: https://<span class="idiff left right">anonscm.debian.org/cgit/debian-med/fastlink.git</span></span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext">Vcs-Git: <span class="idiff left right">git://anonscm.debian.org/debian-med</span>/fastlink.git</span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext">Homepage: http://www.ncbi.nlm.nih.gov/CBBResearch/Schaffer/fastlink.html</span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper (>= <span class="idiff left right">11~</span>)</span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">Standards-Version: <span class="idiff left right">4.1.4</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">Vcs-Browser: https://<span class="idiff left right">salsa.debian.org/med-team/fastlink</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">Vcs-Git: <span class="idiff left right">https://salsa.debian.org/med-team</span>/fastlink.git</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">Homepage: http<span class="idiff left right">s</span>://www.ncbi.nlm.nih.gov/CBBResearch/Schaffer/fastlink.html</span>
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12
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"></span>
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13
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">Package: fastlink</span>
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14
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">Architecture: any</span>
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<a href="https://salsa.debian.org/med-team/fastlink/compare/1a96ca2070c7031c15386de3b73657f671b4e5de...aa13d344c3e7f7c648ee2dc123a7ceff6c0955b9#ffaee2b50a43d0b7e195d61e4cfc213a146ebbcd"><strong>debian/fastlink-doc.doc-base.alleles</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7,4 +7,4 @@ Abstract: This document describes the implementation in FASTLINK of some</td>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">Section: Science/Biology</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">Format: postscript</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext">Files: /usr/share/doc/fastlink<span class="idiff left right">-doc</span>/paper5.ps.gz</span></pre>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">Files: /usr/share/doc/fastlink/paper5.ps.gz</span></pre>
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<a href="https://salsa.debian.org/med-team/fastlink/compare/1a96ca2070c7031c15386de3b73657f671b4e5de...aa13d344c3e7f7c648ee2dc123a7ceff6c0955b9#d677a4f4c8b1e77608c9a47d0737763307cfbc05"><strong>debian/fastlink-doc.doc-base.autoselect</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7,4 +7,4 @@ Abstract: This document describes how the LINKAGE program was enhanced</td>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">Section: Science/Biology</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">Format: postscript</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext">Files: /usr/share/doc/fastlink<span class="idiff left right">-doc</span>/paper6.ps.gz</span></pre>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">Files: /usr/share/doc/fastlink/paper6.ps.gz</span></pre>
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<a href="https://salsa.debian.org/med-team/fastlink/compare/1a96ca2070c7031c15386de3b73657f671b4e5de...aa13d344c3e7f7c648ee2dc123a7ceff6c0955b9#9b60176dd743fa7bd016c9185bc5ea807ab91935"><strong>debian/fastlink-doc.doc-base.avoid-recomp</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6,4 +6,4 @@ Abstract: This document describes improvements over the original LINKAGE</td>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Section: Science/Biology</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">Format: postscript</span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">Files: /usr/share/doc/fastlink<span class="idiff left right">-doc</span>/paper2.ps.gz</span></pre>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">Files: /usr/share/doc/fastlink/paper2.ps.gz</span></pre>
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<li id="6336f4287caac9d3e65de7decbfdca4d5930fc7c">
<a href="https://salsa.debian.org/med-team/fastlink/compare/1a96ca2070c7031c15386de3b73657f671b4e5de...aa13d344c3e7f7c648ee2dc123a7ceff6c0955b9#6336f4287caac9d3e65de7decbfdca4d5930fc7c"><strong>debian/fastlink-doc.doc-base.fastlink</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7,4 +7,4 @@ Abstract: This document describes the basics of the fastlink allgorithm</td>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">Section: Science/Biology</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">Format: postscript</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext">Files: /usr/share/doc/fastlink<span class="idiff left right">-doc</span>/paper1.ps.gz</span></pre>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">Files: /usr/share/doc/fastlink/paper1.ps.gz</span></pre>
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<li id="45464516683f0d214f29745c5af9c7bf0d9d967a">
<a href="https://salsa.debian.org/med-team/fastlink/compare/1a96ca2070c7031c15386de3b73657f671b4e5de...aa13d344c3e7f7c648ee2dc123a7ceff6c0955b9#45464516683f0d214f29745c5af9c7bf0d9d967a"><strong>debian/fastlink-doc.doc-base.loops</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,4 +5,4 @@ Abstract: This document describes some aspects of pedigree loops in fastlink.</td>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Section: Science/Biology</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">Format: postscript</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">Files: /usr/share/doc/fastlink<span class="idiff left right">-doc</span>/loops.ps.gz</span></pre>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">Files: /usr/share/doc/fastlink/loops.ps.gz</span></pre>
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<a href="https://salsa.debian.org/med-team/fastlink/compare/1a96ca2070c7031c15386de3b73657f671b4e5de...aa13d344c3e7f7c648ee2dc123a7ceff6c0955b9#cb562a5150b45a6ec41c27768676e02f65df0381"><strong>debian/fastlink-doc.doc-base.parallelization</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6,4 +6,4 @@ Abstract: This document describes a parallel implementation of a</td>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Section: Science/Biology</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">Format: postscript</span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">Files: /usr/share/doc/fastlink<span class="idiff left right">-doc</span>/paper3.ps.gz</span></pre>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">Files: /usr/share/doc/fastlink/paper3.ps.gz</span></pre>
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<a href="https://salsa.debian.org/med-team/fastlink/compare/1a96ca2070c7031c15386de3b73657f671b4e5de...aa13d344c3e7f7c648ee2dc123a7ceff6c0955b9#a8ac34f3aaf06ebde78467ef8e4b3edf91c0f302"><strong>debian/fastlink-doc.doc-base.parallelization2</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7,4 +7,4 @@ Abstract: This document describes a second parallel implementation of the</td>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">Section: Science/Biology</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">Format: postscript</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext">Files: /usr/share/doc/fastlink<span class="idiff left right">-doc</span>/paper4.ps.gz</span></pre>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">Files: /usr/share/doc/fastlink/paper4.ps.gz</span></pre>
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<a href="https://salsa.debian.org/med-team/fastlink/compare/1a96ca2070c7031c15386de3b73657f671b4e5de...aa13d344c3e7f7c648ee2dc123a7ceff6c0955b9#f67c67336a2b65601c383627dabc025dc7fe55ed"><strong>debian/fastlink-doc.doc-base.random</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6,4 +6,4 @@ Abstract: This document describes how to find a minimum loop cutset in a</td>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Section: Science/Biology</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">Format: postscript</span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">Files: /usr/share/doc/fastlink<span class="idiff left right">-doc</span>/paper7.ps.gz</span></pre>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">Files: /usr/share/doc/fastlink/paper7.ps.gz</span></pre>
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<a href="https://salsa.debian.org/med-team/fastlink/compare/1a96ca2070c7031c15386de3b73657f671b4e5de...aa13d344c3e7f7c648ee2dc123a7ceff6c0955b9#05caf8e95ed1289487b0f5d18b99d6e08dc53202"><strong>debian/fastlink-doc.doc-base.traverse</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6,4 +6,4 @@ Abstract: This document describes some aspects of pedigree traversal in</td>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Section: Science/Biology</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">Format: postscript</span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">Files: /usr/share/doc/fastlink<span class="idiff left right">-doc</span>/traverse.ps.gz</span></pre>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">Files: /usr/share/doc/fastlink/traverse.ps.gz</span></pre>
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<a href="https://salsa.debian.org/med-team/fastlink/compare/1a96ca2070c7031c15386de3b73657f671b4e5de...aa13d344c3e7f7c648ee2dc123a7ceff6c0955b9#ee2308943b57f6491b02137df98fed1524525642"><strong>debian/fastlink-doc.doc-base.unknown</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6,4 +6,4 @@ Abstract: This document describes some aspects of the UNKNOWN auxiliary</td>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Section: Science/Biology</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">Format: postscript</span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">Files: /usr/share/doc/fastlink<span class="idiff left right">-doc</span>/unknown.ps.gz</span></pre>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">Files: /usr/share/doc/fastlink/unknown.ps.gz</span></pre>
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<a href="https://salsa.debian.org/med-team/fastlink/compare/1a96ca2070c7031c15386de3b73657f671b4e5de...aa13d344c3e7f7c648ee2dc123a7ceff6c0955b9#fc932f0eaa389a4e2b93916f3995aae4019ea823"><strong>debian/get-orig-source</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -12,7 +12,7 @@ mkdir -p ../tarballs</td>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd</span> ../tarballs</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="shell"><span class="nb" style="color: #0086b3;">rm</span> <span class="nt" style="color: navy;">-f</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: teal;">$UPSTREAMTAR</span><span class="s2" style="color: #d14;">"</span></span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="shell">wget <span class="idiff left right">ftp</span>://ftp.ncbi.nih.gov/pub/fastlink/<span class="nv" style="color: teal;">$UPSTREAMTAR</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="shell">wget <span class="idiff left right">https</span>://ftp.ncbi.nih.gov/pub/fastlink/<span class="nv" style="color: teal;">$UPSTREAMTAR</span></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="shell"><span class="nb" style="color: #0086b3;">tar</span> <span class="nt" style="color: navy;">-xzf</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: teal;">$UPSTREAMTAR</span><span class="s2" style="color: #d14;">"</span></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="shell"><span class="nv" style="color: teal;">PATCHVERSION</span><span class="o" style="font-weight: 600;">=</span><span class="sb" style="color: #d14;">`</span><span class="nb" style="color: #0086b3;">grep</span> <span class="nt" style="color: navy;">-v</span> <span class="s2" style="color: #d14;">"^ "</span> fastlink/README.updates | <span class="nb" style="color: #0086b3;">tail</span> <span class="nt" style="color: navy;">-n</span> 1 | <span class="nb" style="color: #0086b3;">sed</span> <span class="s1" style="color: #d14;">'s/^\([0-9a-z]\+\)\..*/\1/'</span><span class="sb" style="color: #d14;">`</span></span>
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<a href="https://salsa.debian.org/med-team/fastlink/compare/1a96ca2070c7031c15386de3b73657f671b4e5de...aa13d344c3e7f7c648ee2dc123a7ceff6c0955b9#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">#!/usr/bin/make -f</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">export DEB_BUILD_MAINT_OPTIONS=hardening=+all</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">%:</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"> dh $@</span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> dh $@<span class="idiff left right"> --sourcedirectory=4.1P/src</span></span>
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5
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7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"></span>
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6
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">override_dh_clean:</span>
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7
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> <span class="idiff left right">cd 4.1P/src; make</span> allclean</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> <span class="idiff left right">dh_clean --</span> allclean</span>
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8
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"></span>
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9
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">override_dh_auto_build:</span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> cd 4.1P/src && make CFLAGS="$(CFLAGS)" DEBIANLDFLAGS="$(LDFLAGS)"</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> dh_auto_build -- CFLAGS="$(CFLAGS)" DEBIANLDFLAGS="$(LDFLAGS)"</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">override_dh_auto_test:</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> echo "There is no test suite provided but automatism is grabbing check.c for the check which fails."</span>
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11
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"></span>
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12
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">get-orig-source:</span>
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13
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> sh debian/get-orig-source</span></pre>
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