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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/brig">Debian Med / brig</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/brig/commit/e90aaf0841138a4cab66939afa4358340d91f929">e90aaf08</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-07-05T15:58:08+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Strip useless comments from d/rules
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/brig/commit/db2416cf1cc4419fea22645c465034275d556963">db2416cf</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-07-05T15:58:32+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debhelper 11
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/brig/commit/5785462d0bb941e637b057931480b51932f58263">5785462d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-07-05T15:58:39+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Point Vcs fields to salsa.debian.org
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/brig/commit/e960b94b68fce43e0ca4a92694f951c04024ddba">e960b94b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-07-05T15:58:39+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.1.4
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/brig/commit/48ad1b7e0b8bd4839fd58b9c1583ca5f7ed88b75">48ad1b7e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-07-05T16:07:43+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
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<h4>4 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
debian/compat
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/brig/compare/78a2df56a4218c138b79fc64127f1097888dfaaf...48ad1b7e0b8bd4839fd58b9c1583ca5f7ed88b75#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">brig (0.95+dfsg-2) <span class="idiff left right">UNRELEASED</span>; urgency=low</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">brig (0.95+dfsg-2) <span class="idiff left right">unstable</span>; urgency=low</span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> [ Steffen Moeller ]</span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> * debian/upstream/metadata:</span>
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<td class="diff-line-num old_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> - yamllint cleanliness</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> - add<span class="idiff left right">d</span>ed references to registries</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> - added references to registries</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"></span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> [ Andreas Tille ]</span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> * debian/get-orig-source: Use Files-Excluded to strip upstream archive</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> * debhelper 11</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> * Point Vcs fields to salsa.debian.org</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> * Standards-Version: 4.1.4</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Thu, 05 Jul 2018 15:5<span class="idiff left right">6:00</span> +0200</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Thu, 05 Jul 2018 15:5<span class="idiff left right">8:39</span> +0200</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">brig (0.95+dfsg-1) unstable; urgency=low</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"></span>
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<a href="https://salsa.debian.org/med-team/brig/compare/78a2df56a4218c138b79fc64127f1097888dfaaf...48ad1b7e0b8bd4839fd58b9c1583ca5f7ed88b75#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4"><strong>debian/compat</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext"><span class="idiff left right">9</span></span></pre>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext"><span class="idiff left right">11</span></span></pre>
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<a href="https://salsa.debian.org/med-team/brig/compare/78a2df56a4218c138b79fc64127f1097888dfaaf...48ad1b7e0b8bd4839fd58b9c1583ca5f7ed88b75#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Source: brig</span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">Section: science</span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">Priority: optional</span>
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4
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org></span>
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5
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Uploaders: Andreas Tille <tille@debian.org></span>
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6
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper (>= 9),</span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper (>= 11~),</span>
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7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> default-jdk,</span>
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8
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> javahelper,</span>
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9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> ant,</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -12,9 +12,9 @@ Build-Depends: debhelper (>= 9),</td>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> cgview,</span>
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<td class="diff-line-num old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> blast2 | ncbi-blast+-legacy,</span>
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<td class="diff-line-num old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> ncbi-blast+</span>
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<td class="diff-line-num old old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
15
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<td class="diff-line-num new_line old" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext">Standards-Version: <span class="idiff left right">3.9.6</span></span>
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<td class="diff-line-num old old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext">Vcs-Browser: https://<span class="idiff left right">anonscm.debian.org/cgit/debian-med/brig.git</span></span>
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<td class="diff-line-num old old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext">Vcs-Git: <span class="idiff left right">git://anonscm.debian.org/debian-med</span>/brig.git</span>
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<td class="diff-line-num new old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext">Standards-Version: <span class="idiff left right">4.1.4</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">Vcs-Browser: https://<span class="idiff left right">salsa.debian.org/med-team/brig</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext">Vcs-Git: <span class="idiff left right">https://salsa.debian.org/med-team</span>/brig.git</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">Homepage: http://sourceforge.net/projects/brig/</span>
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<td class="diff-line-num old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext">Package: brig</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -36,4 +36,3 @@ Description: BLAST Ring Image Generator</td>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> * BRIG also accepts SAM-formatted read-mapping files enabling genomic</span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> regions present in unassembled sequence data from multiple samples to</span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> be compared simultaneously</span></pre>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="plaintext"></span></pre>
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<a href="https://salsa.debian.org/med-team/brig/compare/78a2df56a4218c138b79fc64127f1097888dfaaf...48ad1b7e0b8bd4839fd58b9c1583ca5f7ed88b75#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,19 +2,6 @@</td>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"># DH_VERBOSE := 1</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"># some helpful variables - uncomment them if needed</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"># shamelessly stolen from http://jmtd.net/log/awk/</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">#DEBVERS := $(shell dpkg-parsechangelog | awk '/^Version:/ {print $$2}')</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">#VERSION := $(shell echo '$(DEBVERS)' | sed -e 's/^[0-9]*://' -e 's/-.*//')</span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">#DEBFLAVOR := $(shell dpkg-parsechangelog | awk '/^Distribution:/ {print $$2}')</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext">#DEBPKGNAME := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}')</span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext">#DEBIAN_BRANCH := $(shell awk 'BEGIN{FS="[= ]+"} /debian-branch/ {print $$2}' debian/gbp.conf)</span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext">#GIT_TAG := $(subst ~,_,$(VERSION))</span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"># alternatively to manually set those variables, you can</span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"># include /usr/share/dpkg/default.mk</span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"># and use what is set there.</span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">JAVA_HOME=/usr/lib/jvm/default-java</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">%:</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -22,4 +9,3 @@ JAVA_HOME=/usr/lib/jvm/default-java</td>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">get-orig-source:</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> . debian/get-orig-source</span></pre>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> # uscan --verbose --force-download --repack --compression xz</span></pre>
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