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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/bcbio">Debian Med / bcbio</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcbio/commit/f698b33e637cad4c84be3da203ab22e54641799a">f698b33e</a></strong>
<div>
<span>by Steffen Möller</span>
<i>at 2018-07-07T21:37:38+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Preparing for 1.0.9 import
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcbio/commit/6fe76bb307966c27b636c92106df0df12bce2c49">6fe76bb3</a></strong>
<div>
<span>by Steffen Möller</span>
<i>at 2018-07-07T21:37:57+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.0.9</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcbio/commit/8c77e243a69bf06115fd8987b09688af02885157">8c77e243</a></strong>
<div>
<span>by Steffen Möller</span>
<i>at 2018-07-07T21:38:32+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.0.9'
Update to upstream version '1.0.9'
with Debian dir dd5095e9059df6e9d1c66dfafb2ef37a990bee33</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcbio/commit/f3321ce7cdf4ab9beba40083ffe338143613b4bf">f3321ce7</a></strong>
<div>
<span>by Steffen Möller</span>
<i>at 2018-07-07T23:18:46+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Prepared for new 1.0.9 release.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcbio/commit/419f6294364c6d147dfb2f7483030988b860e278">419f6294</a></strong>
<div>
<span>by Steffen Möller</span>
<i>at 2018-07-07T23:19:30+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge branch 'master' of salsa.debian.org:med-team/bcbio
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
</a>
</li>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
</a>
</li>
<li class="file-stats">
<a href="#6651ddff6eb82c840ced7c1dddee15c6e1913dd4">
Dockerfile
</a>
</li>
<li class="file-stats">
<a href="#d30b04166486087de34ff05cf278d3dd2ddd2360">
HISTORY.md
</a>
</li>
<li class="file-stats">
<a href="#561b88e19de321ca62c7590bbb350765fb110905">
README.rst
</a>
</li>
<li class="file-stats">
<a href="#059a93c69080af2f6054c5324203b7af73cc5b83">
bcbio/bam/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#e2a5482df2cfb77e36bb48de8be98a8a2778fe28">
bcbio/bam/callable.py
</a>
</li>
<li class="file-stats">
<a href="#b72a55f5bad4e4fcff090e6c68bd1d7db6c5a36f">
bcbio/bam/trim.py
</a>
</li>
<li class="file-stats">
<a href="#e518229f249f53b16d0dd891314f18afa565e3cb">
bcbio/broad/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#fb17eef4888c4f7198909ebc1616eb92a3fed380">
bcbio/chipseq/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#4eabad8cbe351e3e3d7466ee25d9d970b164368a">
bcbio/chipseq/macs2.py
</a>
</li>
<li class="file-stats">
<a href="#fbfb96675c481efdacfedf0214b473e7d623d79c">
bcbio/chipseq/peaks.py
</a>
</li>
<li class="file-stats">
<a href="#2d356a30008ed932f27e4ace4ff645a2231fa5de">
bcbio/cwl/create.py
</a>
</li>
<li class="file-stats">
<a href="#9d1b2d9542eb07c5b8d3680169848427c1e5d46d">
bcbio/cwl/cwlutils.py
</a>
</li>
<li class="file-stats">
<a href="#f6af6837df6254f77d2faec43d98066631097b5e">
bcbio/cwl/defs.py
</a>
</li>
<li class="file-stats">
<a href="#3fe38e0e6f6bb2fb451c38b6cd908de9ba5992b2">
bcbio/cwl/tool.py
</a>
</li>
<li class="file-stats">
<a href="#86f5e930c36509ffef1d2e158fda6d89e6b19e5f">
bcbio/cwl/workflow.py
</a>
</li>
<li class="file-stats">
<a href="#09d9e862a036e6807e58c2decc710d701ffc3ece">
bcbio/distributed/multitasks.py
</a>
</li>
<li class="file-stats">
<a href="#91f437d944b4ba73527d2fe657595538eaa0d306">
bcbio/heterogeneity/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#cb1999524a51a97bd40da890cd301d883550f995">
bcbio/install.py
</a>
</li>
<li class="file-stats">
<a href="#f5ccb8a739885f7f0b20c8075bf02a335bbb6d30">
bcbio/ngsalign/alignprep.py
</a>
</li>
<li class="file-stats">
<a href="#5eae78d8d65ceec04aed346c7bfecf92d6f8df0c">
bcbio/ngsalign/postalign.py
</a>
</li>
<li class="file-stats">
<a href="#fb1771124cfd58b2bad95a99b8cf42f0adde9eee">
bcbio/pipeline/alignment.py
</a>
</li>
<li class="file-stats">
<a href="#d5c6189ea5d946ba80889984110129e1dedd9b79">
bcbio/pipeline/cleanbam.py
</a>
</li>
<li class="file-stats">
<a href="#3bc78861325eafbcc6318a5fe975950a26142070">
bcbio/pipeline/datadict.py
</a>
</li>
<li class="file-stats">
<a href="#4e00cae7dfe5de6a3132be3dd463a7dfa5c8f15b">
bcbio/pipeline/genome.py
</a>
</li>
<li class="file-stats">
<a href="#6b0954b64bb7025f3d13cbef18622daa684dbe1a">
bcbio/pipeline/main.py
</a>
</li>
<li class="file-stats">
<a href="#37887cb2aa9aaaab061447bcf9b787795063503d">
bcbio/pipeline/qcsummary.py
</a>
</li>
<li class="file-stats">
<a href="#28669a7ddccdf8ac47c577727840379bba16c871">
bcbio/pipeline/rnaseq.py
</a>
</li>
<li class="file-stats">
<a href="#6a5842dd9e3c5daac8e6d62a34e4d60ab86b78bf">
bcbio/pipeline/run_info.py
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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