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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/bcbio">Debian Med / bcbio</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcbio/commit/da3f2fee19a3d09d114d1777a0e685ca9a9c261c">da3f2fee</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-07-07T23:30:33+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Debian Med team maintenance
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcbio/commit/4746ee6be5317a098d495e312d3ac7336d2534a7">4746ee6b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-07-07T23:31:01+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Drop ancient X-Python-Version* fields
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcbio/commit/77fd212eba20763fb7116bc1f0b4c9a735f34490">77fd212e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-07-08T00:10:39+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">cme fix dpkg-control
</pre>
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<h4>1 changed file:</h4>
<ul>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
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<h4>Changes:</h4>
<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/bcbio/compare/419f6294364c6d147dfb2f7483030988b860e278...77fd212eba20763fb7116bc1f0b4c9a735f34490#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Source: bcbio</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org></span>
</pre>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Uploaders: Steffen Moeller <moeller@debian.org></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">Testsuite: autopkgtest-pkg-python</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext">Maintainer: Steffen Moeller <moeller@debian.org></span>
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<td class="diff-line-num new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper (>= 10),</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> dh-python, python-all, python-setuptools, python3-all, python3-setuptools,</span>
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<td class="diff-line-num new_line old" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> python3-toolz,</span>
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<td class="diff-line-num old old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> python-logbook, python3-logbook,</span>
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<td class="diff-line-num old old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> python-pysam, python3-pysam,</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> dh-python,</span>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> python-all,</span>
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<td class="diff-line-num new new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> python-setuptools,</span>
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<td class="diff-line-num new new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> python3-all,</span>
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<td class="diff-line-num new new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> python3-setuptools,</span>
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<td class="diff-line-num new new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> python3-toolz,</span>
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<td class="diff-line-num new new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> python-logbook,</span>
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<td class="diff-line-num new new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> python3-logbook,</span>
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<td class="diff-line-num new new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> python-pysam,</span>
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<td class="diff-line-num new new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> python3-pysam,</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"># python3-pybedtools,</span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> <span class="idiff left right"> </span>python3-gffutils,</span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> <span class="idiff left right">python-cyvcf2, python3</span>-cyvcf2,</span>
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13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> <span class="idiff left right">python-pyvcf, python3-pyvcf</span>,</span>
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14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> <span class="idiff left right">python-pandas, python3-pandas</span>,</span>
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15
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> <span class="idiff left right">python-mock, python3-mock</span></span>
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16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"><span class="idiff left right">Standards-Version: 4.1.3</span></span>
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17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"><span class="idiff left right">Homepage: https://github.com/chapmanb/bcbio-nextgen</span></span>
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<td class="diff-line-num old old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
18
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"><span class="idiff left right">X-Python-Version: >= 2.6</span></span>
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19
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"><span class="idiff left right">X-Python3-Version: >= 3.2</span></span>
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20
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"><span class="idiff left right">Vcs-Git: https://salsa.debian.org/med-team/bcbio</span></span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> python3-gffutils,</span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> <span class="idiff left right"> python</span>-cyvcf2,</span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> <span class="idiff left right"> python3-cyvcf2</span>,</span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> <span class="idiff left right"> python-pyvcf</span>,</span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> <span class="idiff left right"> python3-pyvcf,</span></span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"><span class="idiff left right"> python-pandas,</span></span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"><span class="idiff left right"> python3-pandas,</span></span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"><span class="idiff left right"> python-mock,</span></span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"><span class="idiff left right"> python3-mock</span></span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"><span class="idiff left right">Standards-Version: 4.1.5</span></span>
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21
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29
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/bcbio</span>
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22
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext">Testsuite: autopkgtest-pkg-python</span>
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30
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/bcbio.git</span>
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31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext">Homepage: https://github.com/chapmanb/bcbio-nextgen</span>
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23
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext">Package: python-bcbio</span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext">Architecture: all</span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext">Depends: ${python:Depends}, ${misc:Depends}</span>
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35
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext">Depends: ${python:Depends},</span>
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36
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"> ${misc:Depends}</span>
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27
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext">#Suggests: python-bcbio-doc</span>
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28
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext">Description: toolkit for analysing high-throughput sequencing data</span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> This package installs the Python 2 libraries of the bcbio-nextgen</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="39" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="49" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -39,9 +49,10 @@ Description: toolkit for analysing high-throughput sequencing data</td>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext">Package: python3-bcbio</span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext">Architecture: all</span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="plaintext">Depends: ${python3:Depends}, ${misc:Depends}</span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext">Depends: ${python3:Depends},</span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="plaintext"> ${misc:Depends}</span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext">#Suggests: python-bcbio-doc</span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="plaintext">Description: toolkit for analysing high-throughput sequencing data<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext">Description: toolkit for analysing high-throughput sequencing data</span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"> This package installs the Python 3 libraries of the bcbio-nextgen</span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> toolkit implementing best-practice pipelines for fully automated high</span>
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<td class="diff-line-num old_line" data-linenumber="47" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> throughput sequencing analysis.</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="52" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="63" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -52,13 +63,3 @@ Description: toolkit for analysing high-throughput sequencing data</td>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"> contributes a shared community resource that handles the data processing</span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> component of sequencing analysis, providing researchers with more time</span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext"> to focus on the downstream biology.</span></pre>
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<pre style="margin: 0;">-<span id="LC55" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC56" class="line" lang="plaintext"></span>
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57
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="plaintext">#Package: python-bcbio-doc</span>
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58
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="plaintext">#Architecture: all</span>
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59
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="plaintext">#Section: doc</span>
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60
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="plaintext">#Depends: ${sphinxdoc:Depends}, ${misc:Depends}</span>
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<td class="diff-line-num old old_line" data-linenumber="61" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
61
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<pre style="margin: 0;">-<span id="LC61" class="line" lang="plaintext">#Description: <insert up to 60 chars description> (common documentation)</span>
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62
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<pre style="margin: 0;">-<span id="LC62" class="line" lang="plaintext"># <insert long description, indented with spaces></span>
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<td class="diff-line-num old old_line" data-linenumber="63" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
63
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<pre style="margin: 0;">-<span id="LC63" class="line" lang="plaintext"># .</span>
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64
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<pre style="margin: 0;">-<span id="LC64" class="line" lang="plaintext"># This is the common documentation package.</span></pre>
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