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<h3>
Liubov Chuprikova pushed to branch master
at <a href="https://salsa.debian.org/med-team/fastdnaml">Debian Med / fastdnaml</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/fastdnaml/commit/33df73ad2291ff9f61844ed079d3977b1d32d603">33df73ad</a></strong>
<div>
<span>by Liubov Chuprikova</span>
<i>at 2018-07-08T14:47:16+03:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add autopkgtest
</pre>
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<h4>5 changed files:</h4>
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<li class="file-stats">
<a href="#f6a99a1e522a0f5ca122fd9818a9d8536ea59942">
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+
debian/README.test
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#3a5a7cdb36d3ebf45777d0bc382dd46aa7a18f32">
debian/docs
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<li class="file-stats">
<a href="#36d9f10c399cace22f9ea6e1cdd8d797af0bcf57">
debian/tests/Makefile
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<li class="file-stats">
<a href="#83223a554d33ba7e1888274ff8ac43adb8147ba0">
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+
debian/tests/control
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<h4>Changes:</h4>
<li id="f6a99a1e522a0f5ca122fd9818a9d8536ea59942">
<a href="https://salsa.debian.org/med-team/fastdnaml/commit/33df73ad2291ff9f61844ed079d3977b1d32d603#f6a99a1e522a0f5ca122fd9818a9d8536ea59942"><strong>debian/README.test</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="php"><span class="nx">You</span> <span class="nx">can</span> <span class="nx">test</span> <span class="k" style="font-weight: 600;">this</span> <span class="nx">package</span> <span class="nx">by</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="php"></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="php"> <span class="nx">cd</span> <span class="sb" style="color: #d14;">`mktemp -d`</span></span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="php"> <span class="nx">cp</span> <span class="o" style="font-weight: 600;">/</span><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">share</span><span class="o" style="font-weight: 600;">/</span><span class="nx">doc</span><span class="o" style="font-weight: 600;">/</span><span class="nx">fastdnaml</span><span class="o" style="font-weight: 600;">/</span><span class="nx">examples</span><span class="o" style="font-weight: 600;">/</span><span class="nx">tests</span><span class="o" style="font-weight: 600;">/</span><span class="nx">Makefile</span> <span class="o" style="font-weight: 600;">.</span></span>
</pre>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="php"> <span class="nx">make</span> <span class="nx">test</span></span>
</pre>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="php"></span></pre>
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<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/fastdnaml/commit/33df73ad2291ff9f61844ed079d3977b1d32d603#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">fastdnaml (1.2.2-13) UNRELEASED; urgency=medium</span>
</pre>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> [ Andreas Tille ]</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> * Add registry entry</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> [ Liubov Chuprikova ]</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * Add autopkgtest</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> Closes: #890787</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Wed, 27 Sep 2017 15:35:27 +0200</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">fastdnaml (1.2.2-12) unstable; urgency=medium</span>
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<a href="https://salsa.debian.org/med-team/fastdnaml/commit/33df73ad2291ff9f61844ed079d3977b1d32d603#3a5a7cdb36d3ebf45777d0bc382dd46aa7a18f32"><strong>debian/docs</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">docs/fastDNAml_scripts.txt</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">debian/README.test</span></pre>
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<li id="36d9f10c399cace22f9ea6e1cdd8d797af0bcf57">
<a href="https://salsa.debian.org/med-team/fastdnaml/commit/33df73ad2291ff9f61844ed079d3977b1d32d603#36d9f10c399cace22f9ea6e1cdd8d797af0bcf57"><strong>debian/tests/Makefile</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="make"><span class="c" style="color: #998; font-style: italic;">#!/usr/bin/make -f</span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="make"><span class="c" style="color: #998; font-style: italic;"># Samples and tests by Catherine Letondal <letondal@pasteur.fr></span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="make"></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="make"><span class="nv" style="color: teal;">TEST_DATA</span> <span class="o" style="font-weight: 600;">=</span> /usr/share/doc/fastdnaml/examples/tests/fastdnaml.data</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="make"></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="make"><span class="nl">test</span><span class="o" style="font-weight: 600;">:</span> <span class="nf" style="color: #900; font-weight: 600;">fastDNAml fastDNAml_boot</span></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="make"></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="make"><span class="nl">oldfastDNAml</span><span class="o" style="font-weight: 600;">:</span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="make"> <span class="nb" style="color: #0086b3;">cat </span><span class="idiff left right">fastdnaml.data</span> | fastDNAml-util frequencies | fastDNAml-util printdata | fastDNAml-util treefile | fastDNAml <span class="o" style="font-weight: 600;">></span> fastdnaml.out <span class="p">;</span> fastDNAml-util clean_checkpoints</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="make"> <span class="nb" style="color: #0086b3;">cat</span> <span class="nv" style="color: teal;"><span class="idiff left right">$(TEST_DATA)</span></span> | fastDNAml-util frequencies | fastDNAml-util printdata | fastDNAml-util treefile | fastDNAml <span class="o" style="font-weight: 600;">></span> fastdnaml.out <span class="p">;</span> fastDNAml-util clean_checkpoints</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="make"></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="make"><span class="nl">fastDNAml</span><span class="o" style="font-weight: 600;">:</span></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="make"> <span class="nb" style="color: #0086b3;">cat </span><span class="idiff left right">fastdnaml.data</span> | fastDNAml-util printdata | fastDNAml <span class="o" style="font-weight: 600;">></span> fastdnaml.out <span class="p">;</span> fastDNAml-util clean_checkpoints</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="make"> <span class="nb" style="color: #0086b3;">cat</span> <span class="nv" style="color: teal;"><span class="idiff left right">$(TEST_DATA)</span></span> | fastDNAml-util printdata | fastDNAml <span class="o" style="font-weight: 600;">></span> fastdnaml.out <span class="p">;</span> fastDNAml-util clean_checkpoints</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="make"></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="make"><span class="nl">fastDNAml_boot</span><span class="o" style="font-weight: 600;">:</span></span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="make"> <span class="nb" style="color: #0086b3;">cat </span><span class="idiff left right">fastdnaml.data</span> | fastDNAml-util printdata <span class="o" style="font-weight: 600;">></span> fastdnaml.data.tmp<span class="p">;</span> fastDNAml-util fastDNAml_boot <span class="nt" style="color: navy;">-out</span> <span class="nt" style="color: navy;">-boots</span> 2 <span class="nt" style="color: navy;">-max</span> 2 fastdnaml.data.tmp 2</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="make"> <span class="nb" style="color: #0086b3;">cat</span> <span class="nv" style="color: teal;"><span class="idiff left right">$(TEST_DATA)</span></span> | fastDNAml-util printdata <span class="o" style="font-weight: 600;">></span> fastdnaml.data.tmp<span class="p">;</span> fastDNAml-util fastDNAml_boot <span class="nt" style="color: navy;">-out</span> <span class="nt" style="color: navy;">-boots</span> 2 <span class="nt" style="color: navy;">-max</span> 2 fastdnaml.data.tmp 2</span>
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14
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="make"></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="make"><span class="nl">clean</span><span class="o" style="font-weight: 600;">:</span></span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="make"> <span class="nb" style="color: #0086b3;">rm</span> <span class="nt" style="color: navy;">-f</span> <span class="k" style="font-weight: 600;">*</span>.tmp<span class="k" style="font-weight: 600;">*</span> </span>
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<li id="83223a554d33ba7e1888274ff8ac43adb8147ba0">
<a href="https://salsa.debian.org/med-team/fastdnaml/commit/33df73ad2291ff9f61844ed079d3977b1d32d603#83223a554d33ba7e1888274ff8ac43adb8147ba0"><strong>debian/tests/control</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Tests: Makefile</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">Depends: @</span></pre>
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