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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/libmuscle">Debian Med / libmuscle</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/libmuscle/commit/3085e8ba45c3b97fb8a6fb9ce127ead5971d71cd">3085e8ba</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-07-10T21:03:25+02:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Create symbols file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libmuscle/commit/d943c351b5c109b2c5b80a489ab7415aea930dc4">d943c351</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-07-10T21:05:19+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#595fc624683d65d22ee18e066600e5bf5c175636">
<span class="new-file">
+
debian/libmuscle1.symbols
</span>
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/libmuscle/compare/767ef10e74d4a6ceb35424779c2eb2b64a07e05d...d943c351b5c109b2c5b80a489ab7415aea930dc4#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">libmuscle (3.7+4565-3) <span class="idiff left right">UNRELEASED</span>; urgency=medium</span>
</pre>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">libmuscle (3.7+4565-3) <span class="idiff left right">unstable</span>; urgency=medium</span>
</pre>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> * Drop version number from package name</span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> * Fake watch file</span>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> * debhelper 11</span>
</pre>
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> * Point Vcs fields to salsa.debian.org</span>
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<td class="diff-line-num old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> * Standards-Version: 4.1.5</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> * Create symbols file</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Tue, 10 Jul 2018 <span class="idiff left right">15:33:34</span> +0200</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Tue, 10 Jul 2018 <span class="idiff left right">21:03:57</span> +0200</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">libmuscle (3.7+4565-2) unstable; urgency=medium</span>
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<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<li id="595fc624683d65d22ee18e066600e5bf5c175636">
<a href="https://salsa.debian.org/med-team/libmuscle/compare/767ef10e74d4a6ceb35424779c2eb2b64a07e05d...d943c351b5c109b2c5b80a489ab7415aea930dc4#595fc624683d65d22ee18e066600e5bf5c175636"><strong>debian/libmuscle1.symbols</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">libMUSCLE.so.1 libmuscle1 #MINVER#</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"> _ZN6muscle10ALPHAToStrENS_5ALPHAE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> _ZN6muscle10ALPHA_OptsE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> _ZN6muscle10ClustSetDF11ComputeDistERKNS_5ClustEjj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> _ZN6muscle10ClustSetDF11GetLeafNameEj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> _ZN6muscle10ClustSetDF12GetLeafCountEv@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> _ZN6muscle10ClustSetDF9GetLeafIdEj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> _ZN6muscle10ClustSetDF9JoinNodesERKNS_5ClustEjjjPdS4_@Base 3.7+4565</span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> _ZN6muscle10CountKmersEPKhjPh@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> _ZN6muscle10DiffTreesEERKNS_4TreeES2_Pj@Base 3.7+4565</span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> _ZN6muscle10DistCalcDF4InitERKNS_8DistFuncE@Base 3.7+4565</span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> _ZN6muscle10DoMakeTreeEv@Base 3.7+4565</span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> _ZN6muscle10GetCmdLineEv@Base 3.7+4565</span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> _ZN6muscle10KimuraDistEd@Base 3.7+4565</span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> _ZN6muscle10ListParamsEv@Base 3.7+4565</span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> _ZN6muscle10LogEstringEPKs@Base 3.7+4565</span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> _ZN6muscle10MHackStartERNS_7SeqVectE@Base 3.7+4565</span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> _ZN6muscle10MergeDiagsERNS_8DiagListE@Base 3.7+4565</span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> _ZN6muscle10ObjScoreDPERKNS_3MSAES2_Pf@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> _ZN6muscle10ObjScorePSERKNS_3MSAEPf@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> _ZN6muscle10ObjScoreSPERKNS_3MSAEPf@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> _ZN6muscle10ObjScoreXPERKNS_3MSAES2_@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> _ZN6muscle10OutWeightsEPKcRKNS_3MSAE@Base 3.7+4565</span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> _ZN6muscle10RefineTreeERNS_3MSAERNS_4TreeE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> _ZN6muscle10RefineVertERNS_3MSAERKNS_4TreeEj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> _ZN6muscle10ScoreToStrEf@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> _ZN6muscle10SetLogFileEv@Base 3.7+4565</span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> _ZN6muscle10SetPPScoreENS_7PPSCOREE@Base 3.7+4565</span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> _ZN6muscle10SetPPScoreEb@Base 3.7+4565</span>
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30
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> _ZN6muscle10SortCountsEPKfPj@Base 3.7+4565</span>
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31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"> _ZN6muscle10StrToALPHAEPKc@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> _ZN6muscle10StrToScoreEPKc@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext"> _ZN6muscle10SumLogFastEff@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"> _ZN6muscle10SumLogFastEfff@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"> _ZN6muscle10SumLogFastEffff@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"> _ZN6muscle10TrimBlanksEPc@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext"> _ZN6muscle10g_Cluster1E@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"> _ZN6muscle10g_Cluster2E@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"> _ZN6muscle10g_ObjScoreE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"> _ZN6muscle10g_TermGapsE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext"> _ZN6muscle10g_bAnchorsE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext"> _ZN6muscle10g_bBrennerE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"> _ZN6muscle10g_bPPScoreE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext"> _ZN6muscle10g_bProfileE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"> _ZN6muscle10g_bRefineWE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext"> _ZN6muscle10g_bVerboseE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext"> _ZN6muscle10g_bVersionE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext"> _ZN6muscle10ptrBestMSAE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext"> _ZN6muscle11AlignSubFamERNS_7SeqVectERKNS_4TreeEjRNS_3MSAE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="plaintext"> _ZN6muscle11AssertMSAEqERKNS_3MSAES2_@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext"> _ZN6muscle11CheckMemUseEv@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext"> _ZN6muscle11ClustSetMSA11ComputeDistERKNS_5ClustEjj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="plaintext"> _ZN6muscle11ClustSetMSA11GetLeafNameEj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="plaintext"> _ZN6muscle11ClustSetMSA12GetLeafCountEv@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext"> _ZN6muscle11ClustSetMSA9GetLeafIdEj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext"> _ZN6muscle11ClustSetMSA9JoinNodesERKNS_5ClustEjjjPdS4_@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="plaintext"> _ZN6muscle11ClusterTree14AddToDisjointsEPNS_11ClusterNodeE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext"> _ZN6muscle11ClusterTree19DeleteFromDisjointsEPNS_11ClusterNodeE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="plaintext"> _ZN6muscle11ClusterTree6CreateERKNS_8DistFuncE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="plaintext"> _ZN6muscle11ClusterTreeC1Ev@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="plaintext"> _ZN6muscle11ClusterTreeC2Ev@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="plaintext"> _ZN6muscle11ClusterTreeD0Ev@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="plaintext"> _ZN6muscle11ClusterTreeD1Ev@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="plaintext"> _ZN6muscle11ClusterTreeD2Ev@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="plaintext"> _ZN6muscle11DiagOverlapERKNS_4DiagES2_@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="plaintext"> _ZN6muscle11DistCalcMSA4InitERKNS_3MSAENS_8DISTANCEE@Base 3.7+4565</span>
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67
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="plaintext"> _ZN6muscle11DistKmer4_6ERKNS_7SeqVectERNS_8DistFuncE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="plaintext"> _ZN6muscle11DistKmer6_6ERKNS_7SeqVectERNS_8DistFuncE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="plaintext"> _ZN6muscle11GetFastaSeqEP8_IO_FILEPjPPcb@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="plaintext"> _ZN6muscle11GetMemUseMBEv@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="plaintext"> _ZN6muscle11GlobalAlignEPKNS_7ProfPosEjS2_jRNS_6PWPathE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="plaintext"> _ZN6muscle11ListProfileEPKNS_7ProfPosEjPKNS_3MSAE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="plaintext"> _ZN6muscle11MakeRootMSAERKNS_7SeqVectERKNS_4TreeEPNS_8ProgNodeERNS_3MSAE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="plaintext"> _ZN6muscle11MulEstringsEPKsS1_Ps@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="plaintext"> _ZN6muscle11ObjScoreIdsERKNS_3MSAEPKjjS4_j@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="plaintext"> _ZN6muscle11OnExceptionEv@Base 3.7+4565</span>
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77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="plaintext"> _ZN6muscle11ProbToScoreEf@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="plaintext"> _ZN6muscle11RefineHorizERNS_3MSAERKNS_4TreeEjbb@Base 3.7+4565</span>
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79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="plaintext"> _ZN6muscle11RefineTreeEERNS_3MSAERKNS_7SeqVectERNS_4TreeEPNS_8ProgNodeE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="plaintext"> _ZN6muscle11SaveCmdLineEiPPc@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="plaintext"> _ZN6muscle11ScoreToProbEf@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="plaintext"> _ZN6muscle11ScoreToStrLEf@Base 3.7+4565</span>
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83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="plaintext"> _ZN6muscle11SetMaxItersEj@Base 3.7+4565</span>
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84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="plaintext"> _ZN6muscle11SetSeqStatsEjjj@Base 3.7+4565</span>
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85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="plaintext"> _ZN6muscle11SetTermGapsEPKNS_7ProfPosEj@Base 3.7+4565</span>
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86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="plaintext"> _ZN6muscle11TraceBackSWEPKNS_7ProfPosEjS2_jPKfS4_S4_jjRNS_6PWPathE@Base 3.7+4565</span>
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87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="plaintext"> _ZN6muscle11TreeFromMSAERKNS_3MSAERNS_4TreeENS_7CLUSTERENS_8DISTANCEENS_4ROOTEPKc@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="plaintext"> _ZN6muscle11WeightToStrEf@Base 3.7+4565</span>
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89
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="plaintext"> _ZN6muscle11g_AlignCharE@Base 3.7+4565</span>
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90
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="plaintext"> _ZN6muscle11g_AlphaSizeE@Base 3.7+4565</span>
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91
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="plaintext"> _ZN6muscle11g_Distance1E@Base 3.7+4565</span>
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92
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="plaintext"> _ZN6muscle11g_Distance2E@Base 3.7+4565</span>
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93
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="plaintext"> _ZN6muscle11g_bMakeTreeE@Base 3.7+4565</span>
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94
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="plaintext"> _ZN6muscle11g_bTomHydroE@Base 3.7+4565</span>
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95
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="plaintext"> _ZN6muscle11g_uMaxItersE@Base 3.7+4565</span>
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96
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="plaintext"> _ZN6muscle11g_uWindowToE@Base 3.7+4565</span>
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97
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="plaintext"> _ZN6muscle11g_ulMaxSecsE@Base 3.7+4565</span>
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98
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="plaintext"> _ZN6muscle12AlignTwoMSAsERKNS_3MSAES2_RS0_RNS_6PWPathEbb@Base 3.7+4565</span>
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99
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="plaintext"> _ZN6muscle12AssignColorsERKNS_3MSAEPPi@Base 3.7+4565</span>
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100
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="plaintext"> _ZN6muscle12BitTraceBackEPPcjjcRNS_6PWPathE@Base 3.7+4565</span>
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101
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="plaintext"> _ZN6muscle12CLUSTERToStrENS_7CLUSTERE@Base 3.7+4565</span>
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102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="plaintext"> _ZN6muscle12CLUSTER_OptsE@Base 3.7+4565</span>
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103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="plaintext"> _ZN6muscle12CheckMaxTimeEv@Base 3.7+4565</span>
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104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="plaintext"> _ZN6muscle12ColsToRangesEPKjjjPNS_5RangeE@Base 3.7+4565</span>
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105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="plaintext"> _ZN6muscle12DPRegionList3AddERKNS_8DPRegionE@Base 3.7+4565</span>
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106
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="plaintext"> _ZN6muscle12DiagOverlapAERKNS_4DiagES2_@Base 3.7+4565</span>
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107
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="plaintext"> _ZN6muscle12DiagOverlapBERKNS_4DiagES2_@Base 3.7+4565</span>
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108
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="plaintext"> _ZN6muscle12DiffObjScoreERKNS_3MSAERKNS_6PWPathEPKjjS2_S5_S7_j@Base 3.7+4565</span>
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109
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="plaintext"> _ZN6muscle12DistKbit20_3ERKNS_7SeqVectERNS_8DistFuncE@Base 3.7+4565</span>
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110
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="plaintext"> _ZN6muscle12DistKmer20_3ERKNS_7SeqVectERNS_8DistFuncE@Base 3.7+4565</span>
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111
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="plaintext"> _ZN6muscle12DistPWKimuraERKNS_7SeqVectERNS_8DistFuncE@Base 3.7+4565</span>
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112
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="plaintext"> _ZN6muscle12FastDistKmerERKNS_7SeqVectERNS_8DistFuncE@Base 3.7+4565</span>
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113
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="plaintext"> _ZN6muscle12FindDiagsNucEPKNS_7ProfPosEjS2_jRNS_8DiagListE@Base 3.7+4565</span>
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114
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="plaintext"> _ZN6muscle12FreeDPMemSPNEv@Base 3.7+4565</span>
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115
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="plaintext"> _ZN6muscle12GetRAMSizeMBEv@Base 3.7+4565</span>
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116
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="plaintext"> _ZN6muscle12GetScoreDistERKNS_3MSAEjj@Base 3.7+4565</span>
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117
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="plaintext"> _ZN6muscle12GetStartTimeEv@Base 3.7+4565</span>
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118
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="plaintext"> _ZN6muscle12GetTimeAsStrEv@Base 3.7+4565</span>
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119
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="plaintext"> _ZN6muscle12LINKAGEToStrENS_7LINKAGEE@Base 3.7+4565</span>
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120
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="plaintext"> _ZN6muscle12LINKAGE_OptsE@Base 3.7+4565</span>
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121
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="plaintext"> _ZN6muscle12ListFlagOptsEv@Base 3.7+4565</span>
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122
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="plaintext"> _ZN6muscle12MaxSecsToStrEv@Base 3.7+4565</span>
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123
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<pre style="margin: 0;">+<span id="LC123" class="line" lang="plaintext"> _ZN6muscle12MuscleOutputERNS_3MSAE@Base 3.7+4565</span>
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124
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="plaintext"> _ZN6muscle12NameFromPathEPKcPcj@Base 3.7+4565</span>
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125
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="plaintext"> _ZN6muscle12PPSCOREToStrENS_7PPSCOREE@Base 3.7+4565</span>
</pre>
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126
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<pre style="margin: 0;">+<span id="LC126" class="line" lang="plaintext"> _ZN6muscle12PPSCORE_OptsE@Base 3.7+4565</span>
</pre>
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127
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<pre style="margin: 0;">+<span id="LC127" class="line" lang="plaintext"> _ZN6muscle12PhyEnumEdgesERKNS_4TreeERNS_16PhyEnumEdgeStateE@Base 3.7+4565</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="128" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
128
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<pre style="margin: 0;">+<span id="LC128" class="line" lang="plaintext"> _ZN6muscle12RealignDiffsERKNS_3MSAERKNS_4TreeEPKjRS0_@Base 3.7+4565</span>
</pre>
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129
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<pre style="margin: 0;">+<span id="LC129" class="line" lang="plaintext"> _ZN6muscle12ResidueGroupE@Base 3.7+4565</span>
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130
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<pre style="margin: 0;">+<span id="LC130" class="line" lang="plaintext"> _ZN6muscle12SEQTYPEToStrENS_7SEQTYPEE@Base 3.7+4565</span>
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131
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="plaintext"> _ZN6muscle12SEQTYPE_OptsE@Base 3.7+4565</span>
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132
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="plaintext"> _ZN6muscle12ScoreHistory8SetScoreEjjbf@Base 3.7+4565</span>
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133
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="plaintext"> _ZN6muscle12ScoreHistoryC1Ejj@Base 3.7+4565</span>
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134
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<pre style="margin: 0;">+<span id="LC134" class="line" lang="plaintext"> _ZN6muscle12ScoreHistoryC2Ejj@Base 3.7+4565</span>
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135
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="plaintext"> _ZN6muscle12ScoreHistoryD1Ev@Base 3.7+4565</span>
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136
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<pre style="margin: 0;">+<span id="LC136" class="line" lang="plaintext"> _ZN6muscle12ScoreHistoryD2Ev@Base 3.7+4565</span>
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137
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="plaintext"> _ZN6muscle12SetStartTimeEv@Base 3.7+4565</span>
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138
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<pre style="margin: 0;">+<span id="LC138" class="line" lang="plaintext"> _ZN6muscle12ShortestPathERNS_8DistFuncEj@Base 3.7+4565</span>
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139
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<pre style="margin: 0;">+<span id="LC139" class="line" lang="plaintext"> _ZN6muscle12StrToCLUSTEREPKc@Base 3.7+4565</span>
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140
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<pre style="margin: 0;">+<span id="LC140" class="line" lang="plaintext"> _ZN6muscle12StrToLINKAGEEPKc@Base 3.7+4565</span>
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141
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="plaintext"> _ZN6muscle12StrToPPSCOREEPKc@Base 3.7+4565</span>
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142
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="plaintext"> _ZN6muscle12StrToSEQTYPEEPKc@Base 3.7+4565</span>
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143
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="plaintext"> _ZN6muscle12TermGapScoreEb@Base 3.7+4565</span>
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144
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="plaintext"> _ZN6muscle12TestEstringsEv@Base 3.7+4565</span>
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145
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<pre style="margin: 0;">+<span id="LC145" class="line" lang="plaintext"> _ZN6muscle12VectorIsZeroEPKdj@Base 3.7+4565</span>
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146
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<pre style="margin: 0;">+<span id="LC146" class="line" lang="plaintext"> _ZN6muscle12VectorIsZeroEPKfj@Base 3.7+4565</span>
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147
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<pre style="margin: 0;">+<span id="LC147" class="line" lang="plaintext"> _ZN6muscle12WindowSmoothEPKfjjPfd@Base 3.7+4565</span>
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148
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="plaintext"> _ZN6muscle12g_SeqWeight1E@Base 3.7+4565</span>
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149
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<pre style="margin: 0;">+<span id="LC149" class="line" lang="plaintext"> _ZN6muscle12g_SeqWeight2E@Base 3.7+4565</span>
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150
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<pre style="margin: 0;">+<span id="LC150" class="line" lang="plaintext"> _ZN6muscle12g_bClwStrictE@Base 3.7+4565</span>
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151
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<pre style="margin: 0;">+<span id="LC151" class="line" lang="plaintext"> _ZN6muscle13AlignTwoProfsEPKNS_7ProfPosEjfS2_jfRNS_6PWPathEPPS0_Pj@Base 3.7+4565</span>
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152
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="plaintext"> _ZN6muscle13AssertProfsEqEPKNS_7ProfPosEjS2_j@Base 3.7+4565</span>
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153
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<pre style="margin: 0;">+<span id="LC153" class="line" lang="plaintext"> _ZN6muscle13ConsensusCharERKNS_7ProfPosE@Base 3.7+4565</span>
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154
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<pre style="margin: 0;">+<span id="LC154" class="line" lang="plaintext"> _ZN6muscle13DISTANCEToStrENS_8DISTANCEE@Base 3.7+4565</span>
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155
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<pre style="margin: 0;">+<span id="LC155" class="line" lang="plaintext"> _ZN6muscle13DISTANCE_OptsE@Base 3.7+4565</span>
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156
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<pre style="margin: 0;">+<span id="LC156" class="line" lang="plaintext"> _ZN6muscle13DistUnalignedERKNS_7SeqVectENS_8DISTANCEERNS_8DistFuncE@Base 3.7+4565</span>
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157
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<pre style="margin: 0;">+<span id="LC157" class="line" lang="plaintext"> _ZN6muscle13DoubleToScoreEd@Base 3.7+4565</span>
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158
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<pre style="margin: 0;">+<span id="LC158" class="line" lang="plaintext"> _ZN6muscle13GlobalAlignLEEPKNS_7ProfPosEjS2_jRNS_6PWPathE@Base 3.7+4565</span>
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159
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<pre style="margin: 0;">+<span id="LC159" class="line" lang="plaintext"> _ZN6muscle13GlobalAlignSPEPKNS_7ProfPosEjS2_jRNS_6PWPathE@Base 3.7+4565</span>
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160
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<pre style="margin: 0;">+<span id="LC160" class="line" lang="plaintext"> _ZN6muscle13GlobalAlignSSERKNS_3SeqES2_RNS_6PWPathE@Base 3.7+4565</span>
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161
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<pre style="margin: 0;">+<span id="LC161" class="line" lang="plaintext"> _ZN6muscle13IsHydrophilicEPKf@Base 3.7+4565</span>
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162
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<pre style="margin: 0;">+<span id="LC162" class="line" lang="plaintext"> _ZN6muscle13IsHydrophobicEPKf@Base 3.7+4565</span>
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163
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<pre style="margin: 0;">+<span id="LC163" class="line" lang="plaintext"> _ZN6muscle13LengthEstringEPKs@Base 3.7+4565</span>
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164
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<pre style="margin: 0;">+<span id="LC164" class="line" lang="plaintext"> _ZN6muscle13MergeBestColsEPKfPKjjjPjS4_@Base 3.7+4565</span>
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165
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<pre style="margin: 0;">+<span id="LC165" class="line" lang="plaintext"> _ZN6muscle13OBJSCOREToStrENS_8OBJSCOREE@Base 3.7+4565</span>
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166
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<pre style="margin: 0;">+<span id="LC166" class="line" lang="plaintext"> _ZN6muscle13OBJSCORE_OptsE@Base 3.7+4565</span>
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167
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<pre style="margin: 0;">+<span id="LC167" class="line" lang="plaintext"> _ZN6muscle13OnOutOfMemoryEv@Base 3.7+4565</span>
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168
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<pre style="margin: 0;">+<span id="LC168" class="line" lang="plaintext"> _ZN6muscle13PhyEnumEdgesRERKNS_4TreeERNS_16PhyEnumEdgeStateE@Base 3.7+4565</span>
</pre>
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169
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<pre style="margin: 0;">+<span id="LC169" class="line" lang="plaintext"> _ZN6muscle13ProcessArgStrEPKc@Base 3.7+4565</span>
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170
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<pre style="margin: 0;">+<span id="LC170" class="line" lang="plaintext"> _ZN6muscle13RealignDiffsEERKNS_3MSAERKNS_7SeqVectERKNS_4TreeES8_PKjRS0_PNS_8ProgNodeE@Base 3.7+4565</span>
</pre>
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171
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<pre style="margin: 0;">+<span id="LC171" class="line" lang="plaintext"> _ZN6muscle13RefineSubfamsERNS_3MSAERKNS_4TreeEj@Base 3.7+4565</span>
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172
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<pre style="margin: 0;">+<span id="LC172" class="line" lang="plaintext"> _ZN6muscle13ScoreProfPos2ERKNS_7ProfPosES2_@Base 3.7+4565</span>
</pre>
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173
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<pre style="margin: 0;">+<span id="LC173" class="line" lang="plaintext"> _ZN6muscle13SetMuscleTreeERKNS_4TreeE@Base 3.7+4565</span>
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<td class="diff-line-num new new_line" data-linenumber="174" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
174
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<pre style="margin: 0;">+<span id="LC174" class="line" lang="plaintext"> _ZN6muscle13SetNewHandlerEv@Base 3.7+4565</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="175" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
175
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<pre style="margin: 0;">+<span id="LC175" class="line" lang="plaintext"> _ZN6muscle13StrToDISTANCEEPKc@Base 3.7+4565</span>
</pre>
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176
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<pre style="margin: 0;">+<span id="LC176" class="line" lang="plaintext"> _ZN6muscle13StrToOBJSCOREEPKc@Base 3.7+4565</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="177" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
177
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<pre style="margin: 0;">+<span id="LC177" class="line" lang="plaintext"> _ZN6muscle13StrToTERMGAPSEPKc@Base 3.7+4565</span>
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178
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<pre style="margin: 0;">+<span id="LC178" class="line" lang="plaintext"> _ZN6muscle13TERMGAPSToStrENS_8TERMGAPSE@Base 3.7+4565</span>
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179
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<pre style="margin: 0;">+<span id="LC179" class="line" lang="plaintext"> _ZN6muscle13TERMGAPS_OptsE@Base 3.7+4565</span>
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180
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<pre style="margin: 0;">+<span id="LC180" class="line" lang="plaintext"> _ZN6muscle13TestDiffPathsEv@Base 3.7+4565</span>
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181
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<pre style="margin: 0;">+<span id="LC181" class="line" lang="plaintext"> _ZN6muscle13dPeakMemUseMBE@Base 3.7+4565</span>
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182
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<pre style="margin: 0;">+<span id="LC182" class="line" lang="plaintext"> _ZN6muscle13g_SPScoreGapsE@Base 3.7+4565</span>
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183
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<pre style="margin: 0;">+<span id="LC183" class="line" lang="plaintext"> _ZN6muscle13g_UnalignCharE@Base 3.7+4565</span>
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184
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<pre style="margin: 0;">+<span id="LC184" class="line" lang="plaintext"> _ZN6muscle13g_bAnchoredPPE@Base 3.7+4565</span>
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185
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<pre style="margin: 0;">+<span id="LC185" class="line" lang="plaintext"> _ZN6muscle13g_scoreCenterE@Base 3.7+4565</span>
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186
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<pre style="margin: 0;">+<span id="LC186" class="line" lang="plaintext"> _ZN6muscle13g_uDiagMarginE@Base 3.7+4565</span>
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187
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<pre style="margin: 0;">+<span id="LC187" class="line" lang="plaintext"> _ZN6muscle13g_uSaveWindowE@Base 3.7+4565</span>
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188
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<pre style="margin: 0;">+<span id="LC188" class="line" lang="plaintext"> _ZN6muscle13g_uWindowFromE@Base 3.7+4565</span>
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189
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<pre style="margin: 0;">+<span id="LC189" class="line" lang="plaintext"> _ZN6muscle13ptrStartBreakE@Base 3.7+4565</span>
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190
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<pre style="margin: 0;">+<span id="LC190" class="line" lang="plaintext"> _ZN6muscle14Call_MY_ASSERTEPKcibS1_@Base 3.7+4565</span>
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191
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<pre style="margin: 0;">+<span id="LC191" class="line" lang="plaintext"> _ZN6muscle14DeleteProgNodeERNS_8ProgNodeE@Base 3.7+4565</span>
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192
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<pre style="margin: 0;">+<span id="LC192" class="line" lang="plaintext"> _ZN6muscle14DiagCompatibleERKNS_4DiagES2_@Base 3.7+4565</span>
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193
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<pre style="margin: 0;">+<span id="LC193" class="line" lang="plaintext"> _ZN6muscle14DoubleToWeightEd@Base 3.7+4565</span>
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194
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<pre style="margin: 0;">+<span id="LC194" class="line" lang="plaintext"> _ZN6muscle14EstringNewCopyEPKs@Base 3.7+4565</span>
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195
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<pre style="margin: 0;">+<span id="LC195" class="line" lang="plaintext"> _ZN6muscle14EstringsToPathEPKsS1_RNS_6PWPathE@Base 3.7+4565</span>
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196
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<pre style="margin: 0;">+<span id="LC196" class="line" lang="plaintext"> _ZN6muscle14FastScorePath2EPKNS_7ProfPosEjS2_jRKNS_6PWPathE@Base 3.7+4565</span>
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197
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<pre style="margin: 0;">+<span id="LC197" class="line" lang="plaintext"> _ZN6muscle14FindAnchorColsERKNS_3MSAEPjS3_@Base 3.7+4565</span>
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198
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<pre style="margin: 0;">+<span id="LC198" class="line" lang="plaintext"> _ZN6muscle14GetGotohLengthERKNS_4TreeEjj@Base 3.7+4565</span>
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199
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<pre style="margin: 0;">+<span id="LC199" class="line" lang="plaintext"> _ZN6muscle14GlobalAlignSPNEPKNS_7ProfPosEjS2_jRNS_6PWPathE@Base 3.7+4565</span>
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200
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<pre style="margin: 0;">+<span id="LC200" class="line" lang="plaintext"> _ZN6muscle14IsValidIntegerEPKc@Base 3.7+4565</span>
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201
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<pre style="margin: 0;">+<span id="LC201" class="line" lang="plaintext"> _ZN6muscle14MSASubsetByIdsERKNS_3MSAEPKjjRS0_@Base 3.7+4565</span>
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202
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<pre style="margin: 0;">+<span id="LC202" class="line" lang="plaintext"> _ZN6muscle14MissingCommandEv@Base 3.7+4565</span>
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203
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<pre style="margin: 0;">+<span id="LC203" class="line" lang="plaintext"> _ZN6muscle14PAM200NoCenterE@Base 3.7+4565</span>
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204
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<pre style="margin: 0;">+<span id="LC204" class="line" lang="plaintext"> _ZN6muscle14PathToEstringsERKNS_6PWPathEPPsS4_@Base 3.7+4565</span>
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205
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<pre style="margin: 0;">+<span id="LC205" class="line" lang="plaintext"> _ZN6muscle14PhyEnumBiPartsERKNS_4TreeERNS_16PhyEnumEdgeStateEPjS5_S5_S5_@Base 3.7+4565</span>
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206
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<pre style="margin: 0;">+<span id="LC206" class="line" lang="plaintext"> _ZN6muscle14ProcessArgVectEiPPc@Base 3.7+4565</span>
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207
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<pre style="margin: 0;">+<span id="LC207" class="line" lang="plaintext"> _ZN6muscle14ProfileFromMSAERKNS_3MSAE@Base 3.7+4565</span>
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208
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<pre style="margin: 0;">+<span id="LC208" class="line" lang="plaintext"> _ZN6muscle14ProfileProfileERNS_3MSAES1_S1_@Base 3.7+4565</span>
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209
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<pre style="margin: 0;">+<span id="LC209" class="line" lang="plaintext"> _ZN6muscle14SEQWEIGHTToStrENS_9SEQWEIGHTE@Base 3.7+4565</span>
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210
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<pre style="margin: 0;">+<span id="LC210" class="line" lang="plaintext"> _ZN6muscle14SEQWEIGHT_OptsE@Base 3.7+4565</span>
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211
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<pre style="margin: 0;">+<span id="LC211" class="line" lang="plaintext"> _ZN6muscle14SeqVectFromMSAERKNS_3MSAERNS_7SeqVectE@Base 3.7+4565</span>
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212
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<pre style="margin: 0;">+<span id="LC212" class="line" lang="plaintext"> _ZN6muscle14StrToSEQWEIGHTEPKc@Base 3.7+4565</span>
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213
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<pre style="margin: 0;">+<span id="LC213" class="line" lang="plaintext"> _ZN6muscle14WeightToDoubleEf@Base 3.7+4565</span>
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214
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<pre style="margin: 0;">+<span id="LC214" class="line" lang="plaintext"> _ZN6muscle14WriteScoreFileERKNS_3MSAE@Base 3.7+4565</span>
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215
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<pre style="margin: 0;">+<span id="LC215" class="line" lang="plaintext"> _ZN6muscle14g_CharToLetterE@Base 3.7+4565</span>
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216
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<pre style="margin: 0;">+<span id="LC216" class="line" lang="plaintext"> _ZN6muscle14g_LetterToCharE@Base 3.7+4565</span>
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217
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<pre style="margin: 0;">+<span id="LC217" class="line" lang="plaintext"> _ZN6muscle14g_bClusterOnlyE@Base 3.7+4565</span>
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218
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<pre style="margin: 0;">+<span id="LC218" class="line" lang="plaintext"> _ZN6muscle14g_dHydroFactorE@Base 3.7+4565</span>
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219
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<pre style="margin: 0;">+<span id="LC219" class="line" lang="plaintext"> _ZN6muscle14g_scoreGapOpenE@Base 3.7+4565</span>
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220
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<pre style="margin: 0;">+<span id="LC220" class="line" lang="plaintext"> _ZN6muscle15ClusterByHeightERKNS_4TreeEdPjS3_@Base 3.7+4565</span>
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221
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<pre style="margin: 0;">+<span id="LC221" class="line" lang="plaintext"> _ZN6muscle15CommonKmerCountEPKhjS1_S1_j@Base 3.7+4565</span>
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222
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<pre style="margin: 0;">+<span id="LC222" class="line" lang="plaintext"> _ZN6muscle15DistPWScoreDistERKNS_7SeqVectERNS_8DistFuncE@Base 3.7+4565</span>
</pre>
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223
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<pre style="margin: 0;">+<span id="LC223" class="line" lang="plaintext"> _ZN6muscle15GetGonnetMatrixEj@Base 3.7+4565</span>
</pre>
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224
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<pre style="margin: 0;">+<span id="LC224" class="line" lang="plaintext"> _ZN6muscle15GetLetterScoresERKNS_3MSAEPf@Base 3.7+4565</span>
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225
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<pre style="margin: 0;">+<span id="LC225" class="line" lang="plaintext"> _ZN6muscle15GetPeakMemUseMBEv@Base 3.7+4565</span>
</pre>
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<pre style="margin: 0;">+<span id="LC226" class="line" lang="plaintext"> _ZN6muscle15GetWildcardCharEv@Base 3.7+4565</span>
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227
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<pre style="margin: 0;">+<span id="LC227" class="line" lang="plaintext"> _ZN6muscle15ListDiagSavingsEv@Base 3.7+4565</span>
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228
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<pre style="margin: 0;">+<span id="LC228" class="line" lang="plaintext"> _ZN6muscle15ListVertSavingsEjjPKNS_5RangeEj@Base 3.7+4565</span>
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229
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<pre style="margin: 0;">+<span id="LC229" class="line" lang="plaintext"> _ZN6muscle15MSAFromColRangeERKNS_3MSAEjjRS0_@Base 3.7+4565</span>
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230
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<pre style="margin: 0;">+<span id="LC230" class="line" lang="plaintext"> _ZN6muscle15MSAFromSeqRangeERKNS_3MSAEjjRS0_@Base 3.7+4565</span>
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231
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<pre style="margin: 0;">+<span id="LC231" class="line" lang="plaintext"> _ZN6muscle15ObjScoreSPDimerERKNS_3MSAE@Base 3.7+4565</span>
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232
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<pre style="margin: 0;">+<span id="LC232" class="line" lang="plaintext"> _ZN6muscle15ScoreProfPos2LAERKNS_7ProfPosES2_@Base 3.7+4565</span>
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233
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<pre style="margin: 0;">+<span id="LC233" class="line" lang="plaintext"> _ZN6muscle15ScoreProfPos2NSERKNS_7ProfPosES2_@Base 3.7+4565</span>
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234
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<pre style="margin: 0;">+<span id="LC234" class="line" lang="plaintext"> _ZN6muscle15ScoreProfPos2SPERKNS_7ProfPosES2_@Base 3.7+4565</span>
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235
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<pre style="margin: 0;">+<span id="LC235" class="line" lang="plaintext"> _ZN6muscle15SetListFileNameEPKcb@Base 3.7+4565</span>
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236
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<pre style="margin: 0;">+<span id="LC236" class="line" lang="plaintext"> _ZN6muscle15SetProgressDescEPKc@Base 3.7+4565</span>
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237
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<pre style="margin: 0;">+<span id="LC237" class="line" lang="plaintext"> _ZN6muscle15StripGapColumnsERNS_3MSAE@Base 3.7+4565</span>
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238
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<pre style="margin: 0;">+<span id="LC238" class="line" lang="plaintext"> _ZN6muscle15StripWhitespaceEPc@Base 3.7+4565</span>
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239
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<pre style="margin: 0;">+<span id="LC239" class="line" lang="plaintext"> _ZN6muscle15TraceBackToPathEPPijjRNS_6PWPathE@Base 3.7+4565</span>
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240
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<pre style="margin: 0;">+<span id="LC240" class="line" lang="plaintext"> _ZN6muscle15TreeFromSeqVectERKNS_7SeqVectERNS_4TreeENS_7CLUSTERENS_8DISTANCEENS_4ROOTEPKc@Base 3.7+4565</span>
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241
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<pre style="margin: 0;">+<span id="LC241" class="line" lang="plaintext"> _ZN6muscle15g_IsResidueCharE@Base 3.7+4565</span>
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242
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<pre style="margin: 0;">+<span id="LC242" class="line" lang="plaintext"> _ZN6muscle15g_bKeepSimpleDPE@Base 3.7+4565</span>
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243
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<pre style="margin: 0;">+<span id="LC243" class="line" lang="plaintext"> _ZN6muscle15g_bTracePPScoreE@Base 3.7+4565</span>
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244
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<pre style="margin: 0;">+<span id="LC244" class="line" lang="plaintext"> _ZN6muscle15g_pstrFileName1E@Base 3.7+4565</span>
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245
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<pre style="margin: 0;">+<span id="LC245" class="line" lang="plaintext"> _ZN6muscle15g_pstrFileName2E@Base 3.7+4565</span>
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246
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<pre style="margin: 0;">+<span id="LC246" class="line" lang="plaintext"> _ZN6muscle15g_scoreGapAmbigE@Base 3.7+4565</span>
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247
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<pre style="margin: 0;">+<span id="LC247" class="line" lang="plaintext"> _ZN6muscle15g_scoreGapOpen2E@Base 3.7+4565</span>
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248
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<pre style="margin: 0;">+<span id="LC248" class="line" lang="plaintext"> _ZN6muscle15g_uMaxDiagBreakE@Base 3.7+4565</span>
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249
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<pre style="margin: 0;">+<span id="LC249" class="line" lang="plaintext"> _ZN6muscle15g_uRefineWindowE@Base 3.7+4565</span>
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250
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<pre style="margin: 0;">+<span id="LC250" class="line" lang="plaintext"> _ZN6muscle15g_uWindowOffsetE@Base 3.7+4565</span>
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251
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<pre style="margin: 0;">+<span id="LC251" class="line" lang="plaintext"> _ZN6muscle16DeleteGappedColsERNS_3MSAE@Base 3.7+4565</span>
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252
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<pre style="margin: 0;">+<span id="LC252" class="line" lang="plaintext"> _ZN6muscle16ElapsedTimeAsStrEv@Base 3.7+4565</span>
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253
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<pre style="margin: 0;">+<span id="LC253" class="line" lang="plaintext"> _ZN6muscle16FindAnchorColsPPERKNS_3MSAES2_PjS3_@Base 3.7+4565</span>
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254
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<pre style="margin: 0;">+<span id="LC254" class="line" lang="plaintext"> _ZN6muscle16GetCheckMemUseMBEv@Base 3.7+4565</span>
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255
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<pre style="margin: 0;">+<span id="LC255" class="line" lang="plaintext"> _ZN6muscle16GetGonnetGapOpenEj@Base 3.7+4565</span>
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256
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<pre style="margin: 0;">+<span id="LC256" class="line" lang="plaintext"> _ZN6muscle16GlobalAlignDiagsEPKNS_7ProfPosEjS2_jRNS_6PWPathE@Base 3.7+4565</span>
</pre>
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257
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<pre style="margin: 0;">+<span id="LC257" class="line" lang="plaintext"> _ZN6muscle16GlobalAlignDimerEPKNS_7ProfPosEjS2_jRNS_6PWPathE@Base 3.7+4565</span>
</pre>
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258
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<pre style="margin: 0;">+<span id="LC258" class="line" lang="plaintext"> _ZN6muscle16IsValidFloatCharEc@Base 3.7+4565</span>
</pre>
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259
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<pre style="margin: 0;">+<span id="LC259" class="line" lang="plaintext"> _ZN6muscle16LeafIndexesToIdsERKNS_4TreeEPKjjPj@Base 3.7+4565</span>
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260
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<pre style="margin: 0;">+<span id="LC260" class="line" lang="plaintext"> _ZN6muscle16LetterObjScoreXPERKNS_3MSAES2_Pf@Base 3.7+4565</span>
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261
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<pre style="margin: 0;">+<span id="LC261" class="line" lang="plaintext"> _ZN6muscle16MSAFromSeqSubsetERKNS_3MSAEPKjjRS0_@Base 3.7+4565</span>
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262
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<pre style="margin: 0;">+<span id="LC262" class="line" lang="plaintext"> _ZN6muscle16ObjScoreDP_ProfsEPKNS_7ProfPosES2_jPf@Base 3.7+4565</span>
</pre>
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263
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<pre style="margin: 0;">+<span id="LC263" class="line" lang="plaintext"> _ZN6muscle16PctIdToMAFFTDistEd@Base 3.7+4565</span>
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264
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<pre style="margin: 0;">+<span id="LC264" class="line" lang="plaintext"> _ZN6muscle16ProgAlignSubFamsEv@Base 3.7+4565</span>
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265
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<pre style="margin: 0;">+<span id="LC265" class="line" lang="plaintext"> _ZN6muscle16ProgressiveAlignERKNS_7SeqVectERKNS_4TreeERNS_3MSAE@Base 3.7+4565</span>
</pre>
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266
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<pre style="margin: 0;">+<span id="LC266" class="line" lang="plaintext"> _ZN6muscle16ScoreProfPos2SPNERKNS_7ProfPosES2_@Base 3.7+4565</span>
</pre>
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267
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<pre style="margin: 0;">+<span id="LC267" class="line" lang="plaintext"> _ZN6muscle16ScoreSeqPairGapsERKNS_3MSAEjS2_j@Base 3.7+4565</span>
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268
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<pre style="margin: 0;">+<span id="LC268" class="line" lang="plaintext"> _ZN6muscle16ScoreSeqPairGapsERKNS_3MSAEjS2_jPf@Base 3.7+4565</span>
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269
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<pre style="margin: 0;">+<span id="LC269" class="line" lang="plaintext"> _ZN6muscle16SetInputFileNameEPKc@Base 3.7+4565</span>
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270
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<pre style="margin: 0;">+<span id="LC270" class="line" lang="plaintext"> _ZN6muscle16g_CharToLetterExE@Base 3.7+4565</span>
</pre>
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271
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<pre style="margin: 0;">+<span id="LC271" class="line" lang="plaintext"> _ZN6muscle16g_IsWildcardCharE@Base 3.7+4565</span>
</pre>
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272
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC272" class="line" lang="plaintext"> _ZN6muscle16g_LetterExToCharE@Base 3.7+4565</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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273
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<pre style="margin: 0;">+<span id="LC273" class="line" lang="plaintext"> _ZN6muscle16g_SPScoreLettersE@Base 3.7+4565</span>
</pre>
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274
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<pre style="margin: 0;">+<span id="LC274" class="line" lang="plaintext"> _ZN6muscle16g_bUseTreeNoWarnE@Base 3.7+4565</span>
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275
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<pre style="margin: 0;">+<span id="LC275" class="line" lang="plaintext"> _ZN6muscle16g_pstrInFileNameE@Base 3.7+4565</span>
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276
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<pre style="margin: 0;">+<span id="LC276" class="line" lang="plaintext"> _ZN6muscle16g_pstrSPFileNameE@Base 3.7+4565</span>
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277
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<pre style="margin: 0;">+<span id="LC277" class="line" lang="plaintext"> _ZN6muscle16g_ptrPPScoreMSA1E@Base 3.7+4565</span>
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278
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<pre style="margin: 0;">+<span id="LC278" class="line" lang="plaintext"> _ZN6muscle16g_ptrPPScoreMSA2E@Base 3.7+4565</span>
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279
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<pre style="margin: 0;">+<span id="LC279" class="line" lang="plaintext"> _ZN6muscle16g_ptrScoreMatrixE@Base 3.7+4565</span>
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280
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<pre style="margin: 0;">+<span id="LC280" class="line" lang="plaintext"> _ZN6muscle16g_scoreGapExtendE@Base 3.7+4565</span>
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281
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<pre style="margin: 0;">+<span id="LC281" class="line" lang="plaintext"> _ZN6muscle16g_uAnchorSpacingE@Base 3.7+4565</span>
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282
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<pre style="margin: 0;">+<span id="LC282" class="line" lang="plaintext"> _ZN6muscle16g_uMinDiagLengthE@Base 3.7+4565</span>
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283
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<pre style="margin: 0;">+<span id="LC283" class="line" lang="plaintext"> _ZN6muscle17BLOSUM62_ExpectedE@Base 3.7+4565</span>
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284
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<pre style="margin: 0;">+<span id="LC284" class="line" lang="plaintext"> _ZN6muscle17FindBestColsGradeEPKfjdPjS2_@Base 3.7+4565</span>
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285
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<pre style="margin: 0;">+<span id="LC285" class="line" lang="plaintext"> _ZN6muscle17GlobalAlignSimpleEPKNS_7ProfPosEjS2_jRNS_6PWPathE@Base 3.7+4565</span>
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286
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<pre style="margin: 0;">+<span id="LC286" class="line" lang="plaintext"> _ZN6muscle17IsValidIdentifierEPKc@Base 3.7+4565</span>
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287
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<pre style="margin: 0;">+<span id="LC287" class="line" lang="plaintext"> _ZN6muscle17KimuraDistToPctIdEd@Base 3.7+4565</span>
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288
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<pre style="margin: 0;">+<span id="LC288" class="line" lang="plaintext"> _ZN6muscle17ProgressStepsDoneEv@Base 3.7+4565</span>
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289
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<pre style="margin: 0;">+<span id="LC289" class="line" lang="plaintext"> _ZN6muscle17ProgressiveAlignEERKNS_7SeqVectERKNS_4TreeERNS_3MSAE@Base 3.7+4565</span>
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290
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<pre style="margin: 0;">+<span id="LC290" class="line" lang="plaintext"> _ZN6muscle17SetOutputFileNameEPKc@Base 3.7+4565</span>
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291
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<pre style="margin: 0;">+<span id="LC291" class="line" lang="plaintext"> _ZN6muscle17TrimLeadingBlanksEPc@Base 3.7+4565</span>
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292
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<pre style="margin: 0;">+<span id="LC292" class="line" lang="plaintext"> _ZN6muscle17g_bProfileOnStdInE@Base 3.7+4565</span>
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293
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<pre style="margin: 0;">+<span id="LC293" class="line" lang="plaintext"> _ZN6muscle17g_dMinSmoothScoreE@Base 3.7+4565</span>
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294
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<pre style="margin: 0;">+<span id="LC294" class="line" lang="plaintext"> _ZN6muscle17g_pstrOutFileNameE@Base 3.7+4565</span>
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295
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<pre style="margin: 0;">+<span id="LC295" class="line" lang="plaintext"> _ZN6muscle17g_scoreGapExtend2E@Base 3.7+4565</span>
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296
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<pre style="margin: 0;">+<span id="LC296" class="line" lang="plaintext"> _ZN6muscle17g_uMaxSubFamCountE@Base 3.7+4565</span>
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297
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<pre style="margin: 0;">+<span id="LC297" class="line" lang="plaintext"> _ZN6muscle17g_uTreeSplitNode1E@Base 3.7+4565</span>
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<td class="diff-line-num new new_line" data-linenumber="298" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
298
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<pre style="margin: 0;">+<span id="LC298" class="line" lang="plaintext"> _ZN6muscle17g_uTreeSplitNode2E@Base 3.7+4565</span>
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<td class="diff-line-num new new_line" data-linenumber="299" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
299
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<pre style="margin: 0;">+<span id="LC299" class="line" lang="plaintext"> _ZN6muscle18ApplyMinEdgeLengthERNS_4TreeEd@Base 3.7+4565</span>
</pre>
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300
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<pre style="margin: 0;">+<span id="LC300" class="line" lang="plaintext"> _ZN6muscle18GetGonnetGapExtendEj@Base 3.7+4565</span>
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301
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<pre style="margin: 0;">+<span id="LC301" class="line" lang="plaintext"> _ZN6muscle18GetLeavesExcludingERKNS_4TreeEjjPjS3_@Base 3.7+4565</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="302" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
302
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<pre style="margin: 0;">+<span id="LC302" class="line" lang="plaintext"> _ZN6muscle18GetSeqWeightMethodEv@Base 3.7+4565</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="303" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
303
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<pre style="margin: 0;">+<span id="LC303" class="line" lang="plaintext"> _ZN6muscle18GlobalAlignNoDiagsEPKNS_7ProfPosEjS2_jRNS_6PWPathE@Base 3.7+4565</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="304" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
304
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<pre style="margin: 0;">+<span id="LC304" class="line" lang="plaintext"> _ZN6muscle18MakeRootMSABrennerERNS_7SeqVectERKNS_4TreeEPNS_8ProgNodeERNS_3MSAE@Base 3.7+4565</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="305" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
305
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<pre style="margin: 0;">+<span id="LC305" class="line" lang="plaintext"> _ZN6muscle18PctIdToHeightMAFFTEd@Base 3.7+4565</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="306" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
306
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<pre style="margin: 0;">+<span id="LC306" class="line" lang="plaintext"> _ZN6muscle18SetSeqWeightMethodENS_9SEQWEIGHTE@Base 3.7+4565</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="307" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
307
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<pre style="margin: 0;">+<span id="LC307" class="line" lang="plaintext"> _ZN6muscle18TrimTrailingBlanksEPc@Base 3.7+4565</span>
</pre>
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308
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<pre style="margin: 0;">+<span id="LC308" class="line" lang="plaintext"> _ZN6muscle18g_bCatchExceptionsE@Base 3.7+4565</span>
</pre>
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309
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<pre style="margin: 0;">+<span id="LC309" class="line" lang="plaintext"> _ZN6muscle18g_bNormalizeCountsE@Base 3.7+4565</span>
</pre>
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310
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<pre style="margin: 0;">+<span id="LC310" class="line" lang="plaintext"> _ZN6muscle18g_dMinBestColScoreE@Base 3.7+4565</span>
</pre>
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311
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<pre style="margin: 0;">+<span id="LC311" class="line" lang="plaintext"> _ZN6muscle18g_dSmoothScoreCeilE@Base 3.7+4565</span>
</pre>
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312
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<pre style="margin: 0;">+<span id="LC312" class="line" lang="plaintext"> _ZN6muscle18g_scoreAmbigFactorE@Base 3.7+4565</span>
</pre>
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313
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<pre style="margin: 0;">+<span id="LC313" class="line" lang="plaintext"> _ZN6muscle19CalcClustalWWeightsERKNS_4TreeEPf@Base 3.7+4565</span>
</pre>
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314
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<pre style="margin: 0;">+<span id="LC314" class="line" lang="plaintext"> _ZN6muscle19CalcThreeWayWeightsERKNS_4TreeEjjPf@Base 3.7+4565</span>
</pre>
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315
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<pre style="margin: 0;">+<span id="LC315" class="line" lang="plaintext"> _ZN6muscle19NormalizeUnlessZeroEPfj@Base 3.7+4565</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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316
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<pre style="margin: 0;">+<span id="LC316" class="line" lang="plaintext"> _ZN6muscle19PctIdToHeightKimuraEd@Base 3.7+4565</span>
</pre>
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317
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<pre style="margin: 0;">+<span id="LC317" class="line" lang="plaintext"> _ZN6muscle19ProfScoresFromFreqsEPNS_7ProfPosEj@Base 3.7+4565</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="318" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
318
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<pre style="margin: 0;">+<span id="LC318" class="line" lang="plaintext"> _ZN6muscle19ScoreSeqPairLettersERKNS_3MSAEjS2_j@Base 3.7+4565</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="319" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
319
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC319" class="line" lang="plaintext"> _ZN6muscle19ScoreSeqPairLettersERKNS_3MSAEjS2_jPf@Base 3.7+4565</span>
</pre>
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320
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC320" class="line" lang="plaintext"> _ZN6muscle19SetCurrentAlignmentERNS_3MSAE@Base 3.7+4565</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="321" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
321
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC321" class="line" lang="plaintext"> _ZN6muscle19SetMSAWeightsMuscleERNS_3MSAE@Base 3.7+4565</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="322" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
322
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<pre style="margin: 0;">+<span id="LC322" class="line" lang="plaintext"> _ZN6muscle19g_pstrProf1FileNameE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC323" class="line" lang="plaintext"> _ZN6muscle19g_pstrProf2FileNameE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC324" class="line" lang="plaintext"> _ZN6muscle19g_pstrScoreFileNameE@Base 3.7+4565</span>
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325
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<pre style="margin: 0;">+<span id="LC325" class="line" lang="plaintext"> _ZN6muscle20ClusterBySubfamCountERKNS_4TreeEjPjS3_@Base 3.7+4565</span>
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326
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<pre style="margin: 0;">+<span id="LC326" class="line" lang="plaintext"> _ZN6muscle20InvalidLetterWarningEcc@Base 3.7+4565</span>
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327
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<pre style="margin: 0;">+<span id="LC327" class="line" lang="plaintext"> _ZN6muscle20IsValidSignedIntegerEPKc@Base 3.7+4565</span>
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328
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<pre style="margin: 0;">+<span id="LC328" class="line" lang="plaintext"> _ZN6muscle20MSAColIsConservativeERKNS_3MSAEj@Base 3.7+4565</span>
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329
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<pre style="margin: 0;">+<span id="LC329" class="line" lang="plaintext"> _ZN6muscle20PrepareMSAforScoringERNS_3MSAE@Base 3.7+4565</span>
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330
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<pre style="margin: 0;">+<span id="LC330" class="line" lang="plaintext"> _ZN6muscle20ReportInvalidLettersEv@Base 3.7+4565</span>
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331
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<pre style="margin: 0;">+<span id="LC331" class="line" lang="plaintext"> _ZN6muscle20SaveCurrentAlignmentEv@Base 3.7+4565</span>
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332
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<pre style="margin: 0;">+<span id="LC332" class="line" lang="plaintext"> _ZN6muscle20g_bPrecompiledCenterE@Base 3.7+4565</span>
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333
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<pre style="margin: 0;">+<span id="LC333" class="line" lang="plaintext"> _ZN6muscle20g_pstrClwOutFileNameE@Base 3.7+4565</span>
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334
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<pre style="margin: 0;">+<span id="LC334" class="line" lang="plaintext"> _ZN6muscle20g_pstrMSFOutFileNameE@Base 3.7+4565</span>
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335
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<pre style="margin: 0;">+<span id="LC335" class="line" lang="plaintext"> _ZN6muscle20g_pstrMatrixFileNameE@Base 3.7+4565</span>
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336
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<pre style="margin: 0;">+<span id="LC336" class="line" lang="plaintext"> _ZN6muscle21AlignTwoMSAsGivenPathERKNS_6PWPathERKNS_3MSAES5_RS3_@Base 3.7+4565</span>
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337
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<pre style="margin: 0;">+<span id="LC337" class="line" lang="plaintext"> _ZN6muscle21g_pstrDistMxFileName1E@Base 3.7+4565</span>
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338
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<pre style="margin: 0;">+<span id="LC338" class="line" lang="plaintext"> _ZN6muscle21g_pstrDistMxFileName2E@Base 3.7+4565</span>
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339
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<pre style="margin: 0;">+<span id="LC339" class="line" lang="plaintext"> _ZN6muscle21g_pstrHTMLOutFileNameE@Base 3.7+4565</span>
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340
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<pre style="margin: 0;">+<span id="LC340" class="line" lang="plaintext"> _ZN6muscle21g_pstrPHYIOutFileNameE@Base 3.7+4565</span>
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341
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<pre style="margin: 0;">+<span id="LC341" class="line" lang="plaintext"> _ZN6muscle21g_pstrPHYSOutFileNameE@Base 3.7+4565</span>
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342
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<pre style="margin: 0;">+<span id="LC342" class="line" lang="plaintext"> _ZN6muscle21g_pstrUseTreeFileNameE@Base 3.7+4565</span>
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343
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<pre style="margin: 0;">+<span id="LC343" class="line" lang="plaintext"> _ZN6muscle21g_uMaxTreeRefineItersE@Base 3.7+4565</span>
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344
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<pre style="margin: 0;">+<span id="LC344" class="line" lang="plaintext"> _ZN6muscle21g_uSmoothWindowLengthE@Base 3.7+4565</span>
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345
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<pre style="margin: 0;">+<span id="LC345" class="line" lang="plaintext"> _ZN6muscle22AlignTwoProfsGivenPathERKNS_6PWPathEPKNS_7ProfPosEjfS5_jfPPS3_Pj@Base 3.7+4565</span>
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346
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<pre style="margin: 0;">+<span id="LC346" class="line" lang="plaintext"> _ZN6muscle22AnchoredProfileProfileERNS_3MSAES1_S1_@Base 3.7+4565</span>
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347
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<pre style="margin: 0;">+<span id="LC347" class="line" lang="plaintext"> _ZN6muscle22DiagListToDPRegionListERKNS_8DiagListERNS_12DPRegionListEjj@Base 3.7+4565</span>
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348
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<pre style="margin: 0;">+<span id="LC348" class="line" lang="plaintext"> _ZN6muscle22GetMuscleSeqWeightByIdEj@Base 3.7+4565</span>
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349
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<pre style="margin: 0;">+<span id="LC349" class="line" lang="plaintext"> _ZN6muscle22TreeNeededForWeightingENS_9SEQWEIGHTE@Base 3.7+4565</span>
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350
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<pre style="margin: 0;">+<span id="LC350" class="line" lang="plaintext"> _ZN6muscle22g_pstrFASTAOutFileNameE@Base 3.7+4565</span>
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351
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<pre style="margin: 0;">+<span id="LC351" class="line" lang="plaintext"> _ZN6muscle22g_uRefineHeightSubtreeE@Base 3.7+4565</span>
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352
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<pre style="margin: 0;">+<span id="LC352" class="line" lang="plaintext"> _ZN6muscle23AlignTwoMSAsGivenPathSWERKNS_6PWPathERKNS_3MSAES5_RS3_@Base 3.7+4565</span>
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353
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<pre style="margin: 0;">+<span id="LC353" class="line" lang="plaintext"> _ZN6muscle23CalcThreeWayEdgeWeightsERKNS_4TreeEPPf@Base 3.7+4565</span>
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354
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<pre style="margin: 0;">+<span id="LC354" class="line" lang="plaintext"> _ZN6muscle23ResidueGroupFromFCountsEPKf@Base 3.7+4565</span>
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355
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<pre style="margin: 0;">+<span id="LC355" class="line" lang="plaintext"> _ZN6muscle23g_uHydrophobicRunLengthE@Base 3.7+4565</span>
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356
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<pre style="margin: 0;">+<span id="LC356" class="line" lang="plaintext"> _ZN6muscle24SetClustalWWeightsMuscleERNS_3MSAE@Base 3.7+4565</span>
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357
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<pre style="margin: 0;">+<span id="LC357" class="line" lang="plaintext"> _ZN6muscle24SetThreeWayWeightsMuscleERNS_3MSAE@Base 3.7+4565</span>
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358
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<pre style="margin: 0;">+<span id="LC358" class="line" lang="plaintext"> _ZN6muscle25ClearInvalidLetterWarningEv@Base 3.7+4565</span>
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359
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<pre style="margin: 0;">+<span id="LC359" class="line" lang="plaintext"> _ZN6muscle25SetProfileProfileAlphabetERNS_3MSAES1_@Base 3.7+4565</span>
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360
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<pre style="margin: 0;">+<span id="LC360" class="line" lang="plaintext"> _ZN6muscle26g_pstrClwStrictOutFileNameE@Base 3.7+4565</span>
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361
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<pre style="margin: 0;">+<span id="LC361" class="line" lang="plaintext"> _ZN6muscle27g_uRefineHeightSubtreeTotalE@Base 3.7+4565</span>
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362
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<pre style="margin: 0;">+<span id="LC362" class="line" lang="plaintext"> _ZN6muscle28AssertMSAEqIgnoreCaseAndGapsERKNS_3MSAES2_@Base 3.7+4565</span>
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363
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<pre style="margin: 0;">+<span id="LC363" class="line" lang="plaintext"> _ZN6muscle28g_pstrComputeWeightsFileNameE@Base 3.7+4565</span>
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364
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<pre style="margin: 0;">+<span id="LC364" class="line" lang="plaintext"> _ZN6muscle29GetInternalNodesInHeightOrderERKNS_4TreeEPj@Base 3.7+4565</span>
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365
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<pre style="margin: 0;">+<span id="LC365" class="line" lang="plaintext"> _ZN6muscle2SWEPKNS_7ProfPosEjS2_jRNS_6PWPathE@Base 3.7+4565</span>
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366
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<pre style="margin: 0;">+<span id="LC366" class="line" lang="plaintext"> _ZN6muscle3LogEPKcz@Base 3.7+4565</span>
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367
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<pre style="margin: 0;">+<span id="LC367" class="line" lang="plaintext"> _ZN6muscle3MSA10SetIdCountEj@Base 3.7+4565</span>
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368
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<pre style="margin: 0;">+<span id="LC368" class="line" lang="plaintext"> _ZN6muscle3MSA10SetSeqNameEjPKc@Base 3.7+4565</span>
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369
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<pre style="margin: 0;">+<span id="LC369" class="line" lang="plaintext"> _ZN6muscle3MSA10m_uIdCountE@Base 3.7+4565</span>
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370
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<pre style="margin: 0;">+<span id="LC370" class="line" lang="plaintext"> _ZN6muscle3MSA11ExpandCacheEjj@Base 3.7+4565</span>
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371
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<pre style="margin: 0;">+<span id="LC371" class="line" lang="plaintext"> _ZN6muscle3MSA11SetSeqCountEj@Base 3.7+4565</span>
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372
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<pre style="margin: 0;">+<span id="LC372" class="line" lang="plaintext"> _ZN6muscle3MSA13DeleteColumnsEjj@Base 3.7+4565</span>
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373
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<pre style="margin: 0;">+<span id="LC373" class="line" lang="plaintext"> _ZN6muscle3MSA13FromFASTAFileERNS_8TextFileE@Base 3.7+4565</span>
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374
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<pre style="margin: 0;">+<span id="LC374" class="line" lang="plaintext"> _ZN6muscle3MSA18SetClustalWWeightsERKNS_4TreeE@Base 3.7+4565</span>
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375
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<pre style="margin: 0;">+<span id="LC375" class="line" lang="plaintext"> _ZN6muscle3MSA4CopyERKS0_@Base 3.7+4565</span>
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376
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<pre style="margin: 0;">+<span id="LC376" class="line" lang="plaintext"> _ZN6muscle3MSA4FreeEv@Base 3.7+4565</span>
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377
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<pre style="margin: 0;">+<span id="LC377" class="line" lang="plaintext"> _ZN6muscle3MSA6SeqsEqERKS0_jS2_j@Base 3.7+4565</span>
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378
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<pre style="margin: 0;">+<span id="LC378" class="line" lang="plaintext"> _ZN6muscle3MSA7CopyColEjj@Base 3.7+4565</span>
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379
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<pre style="margin: 0;">+<span id="LC379" class="line" lang="plaintext"> _ZN6muscle3MSA7CopySeqEjRKS0_j@Base 3.7+4565</span>
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380
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<pre style="margin: 0;">+<span id="LC380" class="line" lang="plaintext"> _ZN6muscle3MSA7FromSeqERKNS_3SeqE@Base 3.7+4565</span>
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381
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<pre style="margin: 0;">+<span id="LC381" class="line" lang="plaintext"> _ZN6muscle3MSA7SetCharEjjc@Base 3.7+4565</span>
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382
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<pre style="margin: 0;">+<span id="LC382" class="line" lang="plaintext"> _ZN6muscle3MSA7SetSizeEjj@Base 3.7+4565</span>
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383
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<pre style="margin: 0;">+<span id="LC383" class="line" lang="plaintext"> _ZN6muscle3MSA8FixAlphaEv@Base 3.7+4565</span>
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384
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<pre style="margin: 0;">+<span id="LC384" class="line" lang="plaintext"> _ZN6muscle3MSA8FromFileERNS_8TextFileE@Base 3.7+4565</span>
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385
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<pre style="margin: 0;">+<span id="LC385" class="line" lang="plaintext"> _ZN6muscle3MSA8SetSeqIdEjj@Base 3.7+4565</span>
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386
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<pre style="margin: 0;">+<span id="LC386" class="line" lang="plaintext"> _ZN6muscle3MSA8UnWeightEv@Base 3.7+4565</span>
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387
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<pre style="margin: 0;">+<span id="LC387" class="line" lang="plaintext"> _ZN6muscle3MSA9AppendSeqEPcjS1_@Base 3.7+4565</span>
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388
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<pre style="margin: 0;">+<span id="LC388" class="line" lang="plaintext"> _ZN6muscle3MSA9DeleteColEj@Base 3.7+4565</span>
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389
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<pre style="margin: 0;">+<span id="LC389" class="line" lang="plaintext"> _ZN6muscle3MSA9DeleteSeqEj@Base 3.7+4565</span>
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390
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<pre style="margin: 0;">+<span id="LC390" class="line" lang="plaintext"> _ZN6muscle3MSAC1Ev@Base 3.7+4565</span>
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391
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<pre style="margin: 0;">+<span id="LC391" class="line" lang="plaintext"> _ZN6muscle3MSAC2Ev@Base 3.7+4565</span>
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392
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<pre style="margin: 0;">+<span id="LC392" class="line" lang="plaintext"> _ZN6muscle3MSAD0Ev@Base 3.7+4565</span>
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393
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<pre style="margin: 0;">+<span id="LC393" class="line" lang="plaintext"> _ZN6muscle3MSAD1Ev@Base 3.7+4565</span>
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394
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<pre style="margin: 0;">+<span id="LC394" class="line" lang="plaintext"> _ZN6muscle3MSAD2Ev@Base 3.7+4565</span>
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395
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<pre style="margin: 0;">+<span id="LC395" class="line" lang="plaintext"> _ZN6muscle3RunEv@Base 3.7+4565</span>
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<td class="diff-line-num new new_line" data-linenumber="396" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
396
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<pre style="margin: 0;">+<span id="LC396" class="line" lang="plaintext"> _ZN6muscle3Seq10FromStringEPKcS2_@Base 3.7+4565</span>
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397
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<pre style="margin: 0;">+<span id="LC397" class="line" lang="plaintext"> _ZN6muscle3Seq12CopyReversedERKS0_@Base 3.7+4565</span>
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398
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<pre style="margin: 0;">+<span id="LC398" class="line" lang="plaintext"> _ZN6muscle3Seq13FromFASTAFileERNS_8TextFileE@Base 3.7+4565</span>
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399
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<pre style="margin: 0;">+<span id="LC399" class="line" lang="plaintext"> _ZN6muscle3Seq22StripGapsAndWhitespaceEv@Base 3.7+4565</span>
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400
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<pre style="margin: 0;">+<span id="LC400" class="line" lang="plaintext"> _ZN6muscle3Seq4CopyERKS0_@Base 3.7+4565</span>
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401
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<pre style="margin: 0;">+<span id="LC401" class="line" lang="plaintext"> _ZN6muscle3Seq7SetNameEPKc@Base 3.7+4565</span>
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402
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<pre style="margin: 0;">+<span id="LC402" class="line" lang="plaintext"> _ZN6muscle3Seq7ToUpperEv@Base 3.7+4565</span>
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403
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<pre style="margin: 0;">+<span id="LC403" class="line" lang="plaintext"> _ZN6muscle3Seq8FixAlphaEv@Base 3.7+4565</span>
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404
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<pre style="margin: 0;">+<span id="LC404" class="line" lang="plaintext"> _ZN6muscle3Seq9StripGapsEv@Base 3.7+4565</span>
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405
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<pre style="margin: 0;">+<span id="LC405" class="line" lang="plaintext"> _ZN6muscle3SeqD0Ev@Base 3.7+4565</span>
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406
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<pre style="margin: 0;">+<span id="LC406" class="line" lang="plaintext"> _ZN6muscle3SeqD1Ev@Base 3.7+4565</span>
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407
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<pre style="margin: 0;">+<span id="LC407" class="line" lang="plaintext"> _ZN6muscle3SeqD2Ev@Base 3.7+4565</span>
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408
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<pre style="margin: 0;">+<span id="LC408" class="line" lang="plaintext"> _ZN6muscle3lp2Ed@Base 3.7+4565</span>
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409
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<pre style="margin: 0;">+<span id="LC409" class="line" lang="plaintext"> _ZN6muscle4BTEqEdd@Base 3.7+4565</span>
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410
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<pre style="margin: 0;">+<span id="LC410" class="line" lang="plaintext"> _ZN6muscle4DoSPEv@Base 3.7+4565</span>
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411
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<pre style="margin: 0;">+<span id="LC411" class="line" lang="plaintext"> _ZN6muscle4QuitEPKcz@Base 3.7+4565</span>
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412
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<pre style="margin: 0;">+<span id="LC412" class="line" lang="plaintext"> _ZN6muscle4RankEPKdPdj@Base 3.7+4565</span>
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413
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<pre style="margin: 0;">+<span id="LC413" class="line" lang="plaintext"> _ZN6muscle4RankEPKfPfj@Base 3.7+4565</span>
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414
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<pre style="margin: 0;">+<span id="LC414" class="line" lang="plaintext"> _ZN6muscle4TestEv@Base 3.7+4565</span>
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415
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<pre style="margin: 0;">+<span id="LC415" class="line" lang="plaintext"> _ZN6muscle4Tree11ExpandCacheEv@Base 3.7+4565</span>
</pre>
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416
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<pre style="margin: 0;">+<span id="LC416" class="line" lang="plaintext"> _ZN6muscle4Tree11SetLeafNameEjPKc@Base 3.7+4565</span>
</pre>
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417
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<pre style="margin: 0;">+<span id="LC417" class="line" lang="plaintext"> _ZN6muscle4Tree12AppendBranchEj@Base 3.7+4565</span>
</pre>
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418
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<pre style="margin: 0;">+<span id="LC418" class="line" lang="plaintext"> _ZN6muscle4Tree12CreateRootedEv@Base 3.7+4565</span>
</pre>
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419
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<pre style="margin: 0;">+<span id="LC419" class="line" lang="plaintext"> _ZN6muscle4Tree12OrientParentEjj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC420" class="line" lang="plaintext"> _ZN6muscle4Tree13SetEdgeLengthEjjd@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC421" class="line" lang="plaintext"> _ZN6muscle4Tree14CreateUnrootedEd@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC422" class="line" lang="plaintext"> _ZN6muscle4Tree14UnrootFromFileEv@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC423" class="line" lang="plaintext"> _ZN6muscle4Tree16GetGroupFromFileERNS_8TextFileEjPd@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC424" class="line" lang="plaintext"> _ZN6muscle4Tree16RootUnrootedTreeENS_4ROOTE@Base 3.7+4565</span>
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425
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<pre style="margin: 0;">+<span id="LC425" class="line" lang="plaintext"> _ZN6muscle4Tree20UnrootByDeletingRootEv@Base 3.7+4565</span>
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426
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<pre style="margin: 0;">+<span id="LC426" class="line" lang="plaintext"> _ZN6muscle4Tree4CopyERKS0_@Base 3.7+4565</span>
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427
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<pre style="margin: 0;">+<span id="LC427" class="line" lang="plaintext"> _ZN6muscle4Tree5ClearEv@Base 3.7+4565</span>
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428
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<pre style="margin: 0;">+<span id="LC428" class="line" lang="plaintext"> _ZN6muscle4Tree6CreateEjjPKjS2_PKfS4_S2_PPc@Base 3.7+4565</span>
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429
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<pre style="margin: 0;">+<span id="LC429" class="line" lang="plaintext"> _ZN6muscle4Tree8FromFileERNS_8TextFileE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC430" class="line" lang="plaintext"> _ZN6muscle4Tree9FromClustERNS_5ClustE@Base 3.7+4565</span>
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431
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<pre style="margin: 0;">+<span id="LC431" class="line" lang="plaintext"> _ZN6muscle4Tree9InitCacheEj@Base 3.7+4565</span>
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432
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<pre style="margin: 0;">+<span id="LC432" class="line" lang="plaintext"> _ZN6muscle4Tree9PruneTreeERKS0_Pjj@Base 3.7+4565</span>
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433
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<pre style="margin: 0;">+<span id="LC433" class="line" lang="plaintext"> _ZN6muscle4Tree9SetLeafIdEjj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC434" class="line" lang="plaintext"> _ZN6muscle4TreeD0Ev@Base 3.7+4565</span>
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435
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<pre style="margin: 0;">+<span id="LC435" class="line" lang="plaintext"> _ZN6muscle4TreeD1Ev@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC436" class="line" lang="plaintext"> _ZN6muscle4TreeD2Ev@Base 3.7+4565</span>
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437
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<pre style="margin: 0;">+<span id="LC437" class="line" lang="plaintext"> _ZN6muscle4log2Ed@Base 3.7+4565</span>
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438
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<pre style="margin: 0;">+<span id="LC438" class="line" lang="plaintext"> _ZN6muscle4pow2Ed@Base 3.7+4565</span>
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439
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<pre style="margin: 0;">+<span id="LC439" class="line" lang="plaintext"> _ZN6muscle5BreakEv@Base 3.7+4565</span>
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440
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<pre style="margin: 0;">+<span id="LC440" class="line" lang="plaintext"> _ZN6muscle5Clust10ChooseJoinEPjS1_PfS2_@Base 3.7+4565</span>
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441
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<pre style="margin: 0;">+<span id="LC441" class="line" lang="plaintext"> _ZN6muscle5Clust11ComputeDistEjj@Base 3.7+4565</span>
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442
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<pre style="margin: 0;">+<span id="LC442" class="line" lang="plaintext"> _ZN6muscle5Clust12SetLeafCountEj@Base 3.7+4565</span>
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443
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<pre style="margin: 0;">+<span id="LC443" class="line" lang="plaintext"> _ZN6muscle5Clust13CreateClusterEv@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC444" class="line" lang="plaintext"> _ZN6muscle5Clust16AddToClusterListEj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC445" class="line" lang="plaintext"> _ZN6muscle5Clust16ComputeDistMAFFTEjj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC446" class="line" lang="plaintext"> _ZN6muscle5Clust21ComputeDistMaxLinkageEjj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC449" class="line" lang="plaintext"> _ZN6muscle5Clust25ChooseJoinNearestNeighborEPjS1_PfS2_@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC489" class="line" lang="plaintext"> _ZN6muscle6PWPath4CopyERKS0_@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC491" class="line" lang="plaintext"> _ZN6muscle6PWPath7FromStrEPKc@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC514" class="line" lang="plaintext"> _ZN6muscle6g_bPASE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC516" class="line" lang="plaintext"> _ZN6muscle7CreditsEv@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC517" class="line" lang="plaintext"> _ZN6muscle7FixRootERNS_4TreeENS_4ROOTE@Base 3.7+4565</span>
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518
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<pre style="margin: 0;">+<span id="LC518" class="line" lang="plaintext"> _ZN6muscle7FlagOptEPKc@Base 3.7+4565</span>
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519
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<pre style="margin: 0;">+<span id="LC519" class="line" lang="plaintext"> _ZN6muscle7IncIterEv@Base 3.7+4565</span>
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520
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<pre style="margin: 0;">+<span id="LC520" class="line" lang="plaintext"> _ZN6muscle7MemPlusEmPc@Base 3.7+4565</span>
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521
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<pre style="margin: 0;">+<span id="LC521" class="line" lang="plaintext"> _ZN6muscle7NWSmallEPKNS_7ProfPosEjS2_jRNS_6PWPathE@Base 3.7+4565</span>
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522
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<pre style="margin: 0;">+<span id="LC522" class="line" lang="plaintext"> _ZN6muscle7PPScoreEv@Base 3.7+4565</span>
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523
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<pre style="margin: 0;">+<span id="LC523" class="line" lang="plaintext"> _ZN6muscle7ProfileEv@Base 3.7+4565</span>
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524
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<pre style="margin: 0;">+<span id="LC524" class="line" lang="plaintext"> _ZN6muscle7RefineWERKNS_3MSAERS0_@Base 3.7+4565</span>
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525
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<pre style="margin: 0;">+<span id="LC525" class="line" lang="plaintext"> _ZN6muscle7ScoreEqEff@Base 3.7+4565</span>
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526
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<pre style="margin: 0;">+<span id="LC526" class="line" lang="plaintext"> _ZN6muscle7SeqVect10GetSeqByIdEj@Base 3.7+4565</span>
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527
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<pre style="margin: 0;">+<span id="LC527" class="line" lang="plaintext"> _ZN6muscle7SeqVect13FromFASTAFileERNS_8TextFileE@Base 3.7+4565</span>
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528
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<pre style="margin: 0;">+<span id="LC528" class="line" lang="plaintext"> _ZN6muscle7SeqVect22StripGapsAndWhitespaceEv@Base 3.7+4565</span>
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529
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<pre style="margin: 0;">+<span id="LC529" class="line" lang="plaintext"> _ZN6muscle7SeqVect4CopyERKS0_@Base 3.7+4565</span>
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530
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<pre style="margin: 0;">+<span id="LC530" class="line" lang="plaintext"> _ZN6muscle7SeqVect5ClearEv@Base 3.7+4565</span>
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531
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<pre style="margin: 0;">+<span id="LC531" class="line" lang="plaintext"> _ZN6muscle7SeqVect6GetSeqEj@Base 3.7+4565</span>
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532
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<pre style="margin: 0;">+<span id="LC532" class="line" lang="plaintext"> _ZN6muscle7SeqVect7ToUpperEv@Base 3.7+4565</span>
</pre>
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533
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<pre style="margin: 0;">+<span id="LC533" class="line" lang="plaintext"> _ZN6muscle7SeqVect8FixAlphaEv@Base 3.7+4565</span>
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534
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<pre style="margin: 0;">+<span id="LC534" class="line" lang="plaintext"> _ZN6muscle7SeqVect8PadToMSAERNS_3MSAE@Base 3.7+4565</span>
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535
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<pre style="margin: 0;">+<span id="LC535" class="line" lang="plaintext"> _ZN6muscle7SeqVect8SetSeqIdEjj@Base 3.7+4565</span>
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536
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<pre style="margin: 0;">+<span id="LC536" class="line" lang="plaintext"> _ZN6muscle7SeqVect9AppendSeqERKNS_3SeqE@Base 3.7+4565</span>
</pre>
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537
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<pre style="margin: 0;">+<span id="LC537" class="line" lang="plaintext"> _ZN6muscle7SeqVect9StripGapsEv@Base 3.7+4565</span>
</pre>
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538
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<pre style="margin: 0;">+<span id="LC538" class="line" lang="plaintext"> _ZN6muscle7SeqVectD0Ev@Base 3.7+4565</span>
</pre>
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539
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<pre style="margin: 0;">+<span id="LC539" class="line" lang="plaintext"> _ZN6muscle7SeqVectD1Ev@Base 3.7+4565</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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540
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<pre style="margin: 0;">+<span id="LC540" class="line" lang="plaintext"> _ZN6muscle7SeqVectD2Ev@Base 3.7+4565</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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541
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<pre style="margin: 0;">+<span id="LC541" class="line" lang="plaintext"> _ZN6muscle7SetIterEj@Base 3.7+4565</span>
</pre>
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<pre style="margin: 0;">+<span id="LC556" class="line" lang="plaintext"> _ZN6muscle8DiagList18DeleteIncompatibleEv@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC559" class="line" lang="plaintext"> _ZN6muscle8DiagList4CopyERKS0_@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC562" class="line" lang="plaintext"> _ZN6muscle8DistFunc5SetIdEjj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC563" class="line" lang="plaintext"> _ZN6muscle8DistFunc7SetDistEjjf@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC565" class="line" lang="plaintext"> _ZN6muscle8DistFunc8SetCountEj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC566" class="line" lang="plaintext"> _ZN6muscle8DistFuncC1Ev@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC567" class="line" lang="plaintext"> _ZN6muscle8DistFuncC2Ev@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC568" class="line" lang="plaintext"> _ZN6muscle8DistFuncD0Ev@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC569" class="line" lang="plaintext"> _ZN6muscle8DistFuncD1Ev@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC570" class="line" lang="plaintext"> _ZN6muscle8DistFuncD2Ev@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC571" class="line" lang="plaintext"> _ZN6muscle8DoMuscleEv@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC572" class="line" lang="plaintext"> _ZN6muscle8DrawTreeERKNS_4TreeE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC573" class="line" lang="plaintext"> _ZN6muscle8EdgeList3AddEjj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC574" class="line" lang="plaintext"> _ZN6muscle8EdgeList4CopyERKS0_@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC575" class="line" lang="plaintext"> _ZN6muscle8EdgeList5ClearEv@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC576" class="line" lang="plaintext"> _ZN6muscle8EdgeList6ExpandEv@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC577" class="line" lang="plaintext"> _ZN6muscle8EdgeListC1Ev@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC578" class="line" lang="plaintext"> _ZN6muscle8EdgeListC2Ev@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC579" class="line" lang="plaintext"> _ZN6muscle8EdgeListD0Ev@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC580" class="line" lang="plaintext"> _ZN6muscle8EdgeListD1Ev@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC581" class="line" lang="plaintext"> _ZN6muscle8EdgeListD2Ev@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC583" class="line" lang="plaintext"> _ZN6muscle8IsNucleoEc@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC584" class="line" lang="plaintext"> _ZN6muscle8MHackEndERNS_3MSAE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC585" class="line" lang="plaintext"> _ZN6muscle8MemMinusEmPc@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC586" class="line" lang="plaintext"> _ZN6muscle8MemToStrEd@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC587" class="line" lang="plaintext"> _ZN6muscle8ObjScoreERKNS_3MSAEPKjjS4_j@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC588" class="line" lang="plaintext"> _ZN6muscle8ProgressEPKcz@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC589" class="line" lang="plaintext"> _ZN6muscle8ProgressEjj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC590" class="line" lang="plaintext"> _ZN6muscle8SetAlphaENS_5ALPHAE@Base 3.7+4565</span>
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591
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<pre style="margin: 0;">+<span id="LC591" class="line" lang="plaintext"> _ZN6muscle8TextFile10SkipWhiteXEv@Base 3.7+4565</span>
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592
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<pre style="margin: 0;">+<span id="LC592" class="line" lang="plaintext"> _ZN6muscle8TextFile11GetTrimLineEPcj@Base 3.7+4565</span>
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593
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<pre style="margin: 0;">+<span id="LC593" class="line" lang="plaintext"> _ZN6muscle8TextFile15GetNonblankCharERc@Base 3.7+4565</span>
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594
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<pre style="margin: 0;">+<span id="LC594" class="line" lang="plaintext"> _ZN6muscle8TextFile4InitEP8_IO_FILEPKc@Base 3.7+4565</span>
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595
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<pre style="margin: 0;">+<span id="LC595" class="line" lang="plaintext"> _ZN6muscle8TextFile4SkipEv@Base 3.7+4565</span>
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596
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<pre style="margin: 0;">+<span id="LC596" class="line" lang="plaintext"> _ZN6muscle8TextFile6GetPosEv@Base 3.7+4565</span>
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597
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<pre style="margin: 0;">+<span id="LC597" class="line" lang="plaintext"> _ZN6muscle8TextFile6RewindEv@Base 3.7+4565</span>
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598
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<pre style="margin: 0;">+<span id="LC598" class="line" lang="plaintext"> _ZN6muscle8TextFile6SetPosENS_11TEXTFILEPOSE@Base 3.7+4565</span>
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599
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<pre style="margin: 0;">+<span id="LC599" class="line" lang="plaintext"> _ZN6muscle8TextFile7GetCharERc@Base 3.7+4565</span>
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600
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<pre style="margin: 0;">+<span id="LC600" class="line" lang="plaintext"> _ZN6muscle8TextFile7GetLineEPcj@Base 3.7+4565</span>
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601
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<pre style="margin: 0;">+<span id="LC601" class="line" lang="plaintext"> _ZN6muscle8TextFile7PutCharEc@Base 3.7+4565</span>
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602
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<pre style="margin: 0;">+<span id="LC602" class="line" lang="plaintext"> _ZN6muscle8TextFile8GetCharXERc@Base 3.7+4565</span>
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603
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<pre style="margin: 0;">+<span id="LC603" class="line" lang="plaintext"> _ZN6muscle8TextFile8GetLineXEPcj@Base 3.7+4565</span>
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604
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<pre style="margin: 0;">+<span id="LC604" class="line" lang="plaintext"> _ZN6muscle8TextFile8GetTokenEPcjPKc@Base 3.7+4565</span>
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605
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<pre style="margin: 0;">+<span id="LC605" class="line" lang="plaintext"> _ZN6muscle8TextFile8SkipLineEv@Base 3.7+4565</span>
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606
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<pre style="margin: 0;">+<span id="LC606" class="line" lang="plaintext"> _ZN6muscle8TextFile9GetTokenXEPcjPKc@Base 3.7+4565</span>
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607
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<pre style="margin: 0;">+<span id="LC607" class="line" lang="plaintext"> _ZN6muscle8TextFile9PutFormatEPKcz@Base 3.7+4565</span>
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608
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<pre style="margin: 0;">+<span id="LC608" class="line" lang="plaintext"> _ZN6muscle8TextFile9PutStringEPKc@Base 3.7+4565</span>
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609
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<pre style="margin: 0;">+<span id="LC609" class="line" lang="plaintext"> _ZN6muscle8TextFile9SkipWhiteEv@Base 3.7+4565</span>
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610
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<pre style="margin: 0;">+<span id="LC610" class="line" lang="plaintext"> _ZN6muscle8TextFileC1EP8_IO_FILEPKc@Base 3.7+4565</span>
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611
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<pre style="margin: 0;">+<span id="LC611" class="line" lang="plaintext"> _ZN6muscle8TextFileC1EPKcb@Base 3.7+4565</span>
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612
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<pre style="margin: 0;">+<span id="LC612" class="line" lang="plaintext"> _ZN6muscle8TextFileC2EP8_IO_FILEPKc@Base 3.7+4565</span>
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613
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<pre style="margin: 0;">+<span id="LC613" class="line" lang="plaintext"> _ZN6muscle8TextFileC2EPKcb@Base 3.7+4565</span>
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614
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<pre style="margin: 0;">+<span id="LC614" class="line" lang="plaintext"> _ZN6muscle8TextFileD0Ev@Base 3.7+4565</span>
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615
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<pre style="margin: 0;">+<span id="LC615" class="line" lang="plaintext"> _ZN6muscle8TextFileD1Ev@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC616" class="line" lang="plaintext"> _ZN6muscle8TextFileD2Ev@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC617" class="line" lang="plaintext"> _ZN6muscle8TomHydroEPNS_7ProfPosEj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC618" class="line" lang="plaintext"> _ZN6muscle8ValueOptEPKc@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC619" class="line" lang="plaintext"> _ZN6muscle8g_bDiagsE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC620" class="line" lang="plaintext"> _ZN6muscle8g_bDimerE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC621" class="line" lang="plaintext"> _ZN6muscle8g_bFASTAE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC622" class="line" lang="plaintext"> _ZN6muscle8g_bQuietE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC623" class="line" lang="plaintext"> _ZN6muscle8g_dSUEFFE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC624" class="line" lang="plaintext"> _ZN6muscle8g_uMaxMBE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC625" class="line" lang="plaintext"> _ZN6muscle8isidentfEc@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC626" class="line" lang="plaintext"> _ZN6muscle8lnTolog2Ed@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC627" class="line" lang="plaintext"> _ZN6muscle9AppendMSAERNS_3MSAERKS0_@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC628" class="line" lang="plaintext"> _ZN6muscle9BoolToStrEb@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC629" class="line" lang="plaintext"> _ZN6muscle9DiagBreakERKNS_4DiagES2_@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC630" class="line" lang="plaintext"> _ZN6muscle9DiffPathsERKNS_6PWPathES2_PjS3_S3_S3_@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC631" class="line" lang="plaintext"> _ZN6muscle9DiffTreesERKNS_4TreeES2_RS0_Pj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC632" class="line" lang="plaintext"> _ZN6muscle9DoRefineWEv@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC633" class="line" lang="plaintext"> _ZN6muscle9EstringOpEPKsRKNS_3SeqERNS_3MSAE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC634" class="line" lang="plaintext"> _ZN6muscle9EstringOpEPKsRKNS_3SeqERS2_@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC635" class="line" lang="plaintext"> _ZN6muscle9FindDiagsEPKNS_7ProfPosEjS2_jRNS_8DiagListE@Base 3.7+4565</span>
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636
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<pre style="margin: 0;">+<span id="LC636" class="line" lang="plaintext"> _ZN6muscle9GetCPUGHzEv@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC637" class="line" lang="plaintext"> _ZN6muscle9GetLeavesERKNS_4TreeEjPjS3_@Base 3.7+4565</span>
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638
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<pre style="margin: 0;">+<span id="LC638" class="line" lang="plaintext"> _ZN6muscle9JOINToStrENS_4JOINE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC639" class="line" lang="plaintext"> _ZN6muscle9JOIN_OptsE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC640" class="line" lang="plaintext"> _ZN6muscle9KmerToStrEj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC641" class="line" lang="plaintext"> _ZN6muscle9MSAAppendERNS_3MSAERKS0_@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC642" class="line" lang="plaintext"> _ZN6muscle9NormalizeEPfj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC644" class="line" lang="plaintext"> _ZN6muscle9ROOTToStrENS_4ROOTE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC645" class="line" lang="plaintext"> _ZN6muscle9ROOT_OptsE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC646" class="line" lang="plaintext"> _ZN6muscle9ScoreGapsERKNS_3MSAEPKjj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC649" class="line" lang="plaintext"> _ZN6muscle9StabilizeERKNS_3MSAERS0_@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC650" class="line" lang="plaintext"> _ZN6muscle9StrToJOINEPKc@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC651" class="line" lang="plaintext"> _ZN6muscle9StrToROOTEPKc@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC657" class="line" lang="plaintext"> _ZN6muscle9g_PPScoreE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC658" class="line" lang="plaintext"> _ZN6muscle9g_SeqTypeE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC659" class="line" lang="plaintext"> _ZN6muscle9g_bDiags1E@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC660" class="line" lang="plaintext"> _ZN6muscle9g_bDiags2E@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC661" class="line" lang="plaintext"> _ZN6muscle9g_bProfDBE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC662" class="line" lang="plaintext"> _ZN6muscle9g_bRefineE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC663" class="line" lang="plaintext"> _ZN6muscle9g_bStableE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC664" class="line" lang="plaintext"> _ZNK6muscle10DistCalcDF13CalcDistRangeEjPf@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC665" class="line" lang="plaintext"> _ZNK6muscle10DistCalcDF5GetIdEj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC667" class="line" lang="plaintext"> _ZNK6muscle10DistCalcDF8GetCountEv@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC668" class="line" lang="plaintext"> _ZNK6muscle11ClusterNode13GetLeftWeightEv@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC669" class="line" lang="plaintext"> _ZNK6muscle11ClusterNode14GetClusterLeafEj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC670" class="line" lang="plaintext"> _ZNK6muscle11ClusterNode14GetClusterSizeEv@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC671" class="line" lang="plaintext"> _ZNK6muscle11ClusterNode14GetRightWeightEv@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC672" class="line" lang="plaintext"> _ZNK6muscle11ClusterNode16GetClusterWeightEv@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC673" class="line" lang="plaintext"> _ZNK6muscle11ClusterNode19GetLeftBranchWeightEv@Base 3.7+4565</span>
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689
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<pre style="margin: 0;">+<span id="LC689" class="line" lang="plaintext"> _ZNK6muscle12ScoreHistory8GetScoreEjjbb@Base 3.7+4565</span>
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690
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<pre style="margin: 0;">+<span id="LC690" class="line" lang="plaintext"> _ZNK6muscle3MSA10GetAvgConsEv@Base 3.7+4565</span>
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691
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<pre style="margin: 0;">+<span id="LC691" class="line" lang="plaintext"> _ZNK6muscle3MSA10GetSeqNameEj@Base 3.7+4565</span>
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692
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<pre style="margin: 0;">+<span id="LC692" class="line" lang="plaintext"> _ZNK6muscle3MSA10GuessAlphaEv@Base 3.7+4565</span>
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693
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<pre style="margin: 0;">+<span id="LC693" class="line" lang="plaintext"> _ZNK6muscle3MSA10IsEmptyColEj@Base 3.7+4565</span>
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694
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<pre style="margin: 0;">+<span id="LC694" class="line" lang="plaintext"> _ZNK6muscle3MSA10IsWildcardEjj@Base 3.7+4565</span>
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695
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<pre style="margin: 0;">+<span id="LC695" class="line" lang="plaintext"> _ZNK6muscle3MSA10ToHTMLFileERNS_8TextFileE@Base 3.7+4565</span>
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696
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<pre style="margin: 0;">+<span id="LC696" class="line" lang="plaintext"> _ZNK6muscle3MSA10WeightsSetEv@Base 3.7+4565</span>
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697
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<pre style="margin: 0;">+<span id="LC697" class="line" lang="plaintext"> _ZNK6muscle3MSA11CalcWeightsEv@Base 3.7+4565</span>
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698
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<pre style="margin: 0;">+<span id="LC698" class="line" lang="plaintext"> _ZNK6muscle3MSA11GetLetterExEjj@Base 3.7+4565</span>
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699
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<pre style="margin: 0;">+<span id="LC699" class="line" lang="plaintext"> _ZNK6muscle3MSA11GetSeqIndexEPKcPj@Base 3.7+4565</span>
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700
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<pre style="margin: 0;">+<span id="LC700" class="line" lang="plaintext"> _ZNK6muscle3MSA11GetSeqIndexEj@Base 3.7+4565</span>
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701
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<pre style="margin: 0;">+<span id="LC701" class="line" lang="plaintext"> _ZNK6muscle3MSA11GetSeqIndexEjPj@Base 3.7+4565</span>
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702
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<pre style="margin: 0;">+<span id="LC702" class="line" lang="plaintext"> _ZNK6muscle3MSA11IsGapColumnEj@Base 3.7+4565</span>
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703
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<pre style="margin: 0;">+<span id="LC703" class="line" lang="plaintext"> _ZNK6muscle3MSA11ListWeightsEv@Base 3.7+4565</span>
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704
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<pre style="margin: 0;">+<span id="LC704" class="line" lang="plaintext"> _ZNK6muscle3MSA11ToFASTAFileERNS_8TextFileE@Base 3.7+4565</span>
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705
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<pre style="margin: 0;">+<span id="LC705" class="line" lang="plaintext"> _ZNK6muscle3MSA12ColumnHasGapEj@Base 3.7+4565</span>
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706
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<pre style="margin: 0;">+<span id="LC706" class="line" lang="plaintext"> _ZNK6muscle3MSA12GetCharCountEjj@Base 3.7+4565</span>
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707
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<pre style="margin: 0;">+<span id="LC707" class="line" lang="plaintext"> _ZNK6muscle3MSA12GetSeqBufferEj@Base 3.7+4565</span>
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708
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<pre style="margin: 0;">+<span id="LC708" class="line" lang="plaintext"> _ZNK6muscle3MSA12GetSeqLengthEj@Base 3.7+4565</span>
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709
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<pre style="margin: 0;">+<span id="LC709" class="line" lang="plaintext"> _ZNK6muscle3MSA12GetSeqWeightEj@Base 3.7+4565</span>
</pre>
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710
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<pre style="margin: 0;">+<span id="LC710" class="line" lang="plaintext"> _ZNK6muscle3MSA12SetSeqWeightEjf@Base 3.7+4565</span>
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711
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<pre style="margin: 0;">+<span id="LC711" class="line" lang="plaintext"> _ZNK6muscle3MSA13IsLegalLetterEj@Base 3.7+4565</span>
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712
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<pre style="margin: 0;">+<span id="LC712" class="line" lang="plaintext"> _ZNK6muscle3MSA13SetGSCWeightsEv@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC713" class="line" lang="plaintext"> _ZNK6muscle3MSA14GetGCGCheckSumEj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC714" class="line" lang="plaintext"> _ZNK6muscle3MSA16NormalizeWeightsEf@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC715" class="line" lang="plaintext"> _ZNK6muscle3MSA17CalcBLOSUMWeightsERNS_11ClusterTreeE@Base 3.7+4565</span>
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716
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<pre style="margin: 0;">+<span id="LC716" class="line" lang="plaintext"> _ZNK6muscle3MSA17GetTotalSeqWeightEv@Base 3.7+4565</span>
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717
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<pre style="margin: 0;">+<span id="LC717" class="line" lang="plaintext"> _ZNK6muscle3MSA17SetSubtreeWeight2EPKNS_11ClusterNodeE@Base 3.7+4565</span>
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718
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<pre style="margin: 0;">+<span id="LC718" class="line" lang="plaintext"> _ZNK6muscle3MSA17SetUniformWeightsEv@Base 3.7+4565</span>
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719
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<pre style="margin: 0;">+<span id="LC719" class="line" lang="plaintext"> _ZNK6muscle3MSA18GetPctIdentityPairEjj@Base 3.7+4565</span>
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720
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<pre style="margin: 0;">+<span id="LC720" class="line" lang="plaintext"> _ZNK6muscle3MSA18SetHenikoffWeightsEv@Base 3.7+4565</span>
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721
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<pre style="margin: 0;">+<span id="LC721" class="line" lang="plaintext"> _ZNK6muscle3MSA18UniqueResidueTypesEj@Base 3.7+4565</span>
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722
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<pre style="margin: 0;">+<span id="LC722" class="line" lang="plaintext"> _ZNK6muscle3MSA19SetBLOSUMNodeWeightEPKNS_11ClusterNodeEd@Base 3.7+4565</span>
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723
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<pre style="margin: 0;">+<span id="LC723" class="line" lang="plaintext"> _ZNK6muscle3MSA19SetSubtreeGSCWeightEPNS_11ClusterNodeE@Base 3.7+4565</span>
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724
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<pre style="margin: 0;">+<span id="LC724" class="line" lang="plaintext"> _ZNK6muscle3MSA19ToPhySequentialFileERNS_8TextFileE@Base 3.7+4565</span>
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725
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<pre style="margin: 0;">+<span id="LC725" class="line" lang="plaintext"> _ZNK6muscle3MSA20SetHenikoffWeightsPBEv@Base 3.7+4565</span>
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726
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<pre style="margin: 0;">+<span id="LC726" class="line" lang="plaintext"> _ZNK6muscle3MSA20ToPhyInterleavedFileERNS_8TextFileE@Base 3.7+4565</span>
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727
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<pre style="margin: 0;">+<span id="LC727" class="line" lang="plaintext"> _ZNK6muscle3MSA22CalcHenikoffWeightsColEj@Base 3.7+4565</span>
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728
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<pre style="margin: 0;">+<span id="LC728" class="line" lang="plaintext"> _ZNK6muscle3MSA22SetBLOSUMSubtreeWeightEPKNS_11ClusterNodeEd@Base 3.7+4565</span>
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729
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<pre style="margin: 0;">+<span id="LC729" class="line" lang="plaintext"> _ZNK6muscle3MSA23GetPctGroupIdentityPairEjj@Base 3.7+4565</span>
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730
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<pre style="margin: 0;">+<span id="LC730" class="line" lang="plaintext"> _ZNK6muscle3MSA24CalcHenikoffWeightsColPBEj@Base 3.7+4565</span>
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731
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<pre style="margin: 0;">+<span id="LC731" class="line" lang="plaintext"> _ZNK6muscle3MSA25AlignedColIndexToColIndexEj@Base 3.7+4565</span>
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732
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<pre style="margin: 0;">+<span id="LC732" class="line" lang="plaintext"> _ZNK6muscle3MSA27GetFractionalWeightedCountsEjbPfS1_S1_S1_S1_S1_S1_S1_S1_@Base 3.7+4565</span>
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733
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<pre style="margin: 0;">+<span id="LC733" class="line" lang="plaintext"> _ZNK6muscle3MSA5IsGapEjj@Base 3.7+4565</span>
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734
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<pre style="margin: 0;">+<span id="LC734" class="line" lang="plaintext"> _ZNK6muscle3MSA5LogMeEv@Base 3.7+4565</span>
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735
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<pre style="margin: 0;">+<span id="LC735" class="line" lang="plaintext"> _ZNK6muscle3MSA6GetOccEj@Base 3.7+4565</span>
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736
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<pre style="margin: 0;">+<span id="LC736" class="line" lang="plaintext"> _ZNK6muscle3MSA6GetSeqEjRNS_3SeqE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC737" class="line" lang="plaintext"> _ZNK6muscle3MSA6HasGapEv@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC738" class="line" lang="plaintext"> _ZNK6muscle3MSA6ToFileERNS_8TextFileE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC739" class="line" lang="plaintext"> _ZNK6muscle3MSA7GetCharEjj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC740" class="line" lang="plaintext"> _ZNK6muscle3MSA7GetConsEj@Base 3.7+4565</span>
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741
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<pre style="margin: 0;">+<span id="LC741" class="line" lang="plaintext"> _ZNK6muscle3MSA7GetPWIDEjjPdPj@Base 3.7+4565</span>
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742
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<pre style="margin: 0;">+<span id="LC742" class="line" lang="plaintext"> _ZNK6muscle3MSA8GetSeqIdEj@Base 3.7+4565</span>
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743
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<pre style="margin: 0;">+<span id="LC743" class="line" lang="plaintext"> _ZNK6muscle3MSA8IsGapSeqEj@Base 3.7+4565</span>
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744
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<pre style="margin: 0;">+<span id="LC744" class="line" lang="plaintext"> _ZNK6muscle3MSA9GetLetterEjj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC745" class="line" lang="plaintext"> _ZNK6muscle3MSA9ToAlnFileERNS_8TextFileE@Base 3.7+4565</span>
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746
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<pre style="margin: 0;">+<span id="LC746" class="line" lang="plaintext"> _ZNK6muscle3MSA9ToMSFFileERNS_8TextFileEPKc@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC747" class="line" lang="plaintext"> _ZNK6muscle3Seq11ToFASTAFileERNS_8TextFileE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC748" class="line" lang="plaintext"> _ZNK6muscle3Seq12EqIgnoreCaseERKS0_@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC749" class="line" lang="plaintext"> _ZNK6muscle3Seq15ExtractUngappedERNS_3MSAE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC750" class="line" lang="plaintext"> _ZNK6muscle3Seq17GetUngappedLengthEv@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC751" class="line" lang="plaintext"> _ZNK6muscle3Seq19EqIgnoreCaseAndGapsERKS0_@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC752" class="line" lang="plaintext"> _ZNK6muscle3Seq2EqERKS0_@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC753" class="line" lang="plaintext"> _ZNK6muscle3Seq5LogMeEv@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC754" class="line" lang="plaintext"> _ZNK6muscle3Seq6HasGapEv@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC755" class="line" lang="plaintext"> _ZNK6muscle3Seq9GetLetterEj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC756" class="line" lang="plaintext"> _ZNK6muscle4Tree11GetLeafNameEj@Base 3.7+4565</span>
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757
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<pre style="margin: 0;">+<span id="LC757" class="line" lang="plaintext"> _ZNK6muscle4Tree11GetNeighborEjj@Base 3.7+4565</span>
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758
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<pre style="margin: 0;">+<span id="LC758" class="line" lang="plaintext"> _ZNK6muscle4Tree12ValidateNodeEj@Base 3.7+4565</span>
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759
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<pre style="margin: 0;">+<span id="LC759" class="line" lang="plaintext"> _ZNK6muscle4Tree13GetEdgeLengthEjj@Base 3.7+4565</span>
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760
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<pre style="margin: 0;">+<span id="LC760" class="line" lang="plaintext"> _ZNK6muscle4Tree13GetLeafParentEj@Base 3.7+4565</span>
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761
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<pre style="margin: 0;">+<span id="LC761" class="line" lang="plaintext"> _ZNK6muscle4Tree13GetNodeHeightEj@Base 3.7+4565</span>
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762
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<pre style="margin: 0;">+<span id="LC762" class="line" lang="plaintext"> _ZNK6muscle4Tree13HasEdgeLengthEjj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC763" class="line" lang="plaintext"> _ZNK6muscle4Tree16GetFirstNeighborEjj@Base 3.7+4565</span>
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764
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<pre style="margin: 0;">+<span id="LC764" class="line" lang="plaintext"> _ZNK6muscle4Tree16GetLeafNodeIndexEPKc@Base 3.7+4565</span>
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765
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<pre style="margin: 0;">+<span id="LC765" class="line" lang="plaintext"> _ZNK6muscle4Tree16ToFileNodeRootedERNS_8TextFileEj@Base 3.7+4565</span>
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766
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<pre style="margin: 0;">+<span id="LC766" class="line" lang="plaintext"> _ZNK6muscle4Tree17GetAnyNonLeafNodeEv@Base 3.7+4565</span>
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767
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<pre style="margin: 0;">+<span id="LC767" class="line" lang="plaintext"> _ZNK6muscle4Tree17GetSecondNeighborEjj@Base 3.7+4565</span>
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768
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<pre style="margin: 0;">+<span id="LC768" class="line" lang="plaintext"> _ZNK6muscle4Tree18AssertAreNeighborsEjj@Base 3.7+4565</span>
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769
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<pre style="margin: 0;">+<span id="LC769" class="line" lang="plaintext"> _ZNK6muscle4Tree18NextDepthFirstNodeEj@Base 3.7+4565</span>
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770
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<pre style="margin: 0;">+<span id="LC770" class="line" lang="plaintext"> _ZNK6muscle4Tree18ToFileNodeUnrootedERNS_8TextFileEjj@Base 3.7+4565</span>
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771
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<pre style="margin: 0;">+<span id="LC771" class="line" lang="plaintext"> _ZNK6muscle4Tree19FirstDepthFirstNodeEv@Base 3.7+4565</span>
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772
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<pre style="margin: 0;">+<span id="LC772" class="line" lang="plaintext"> _ZNK6muscle4Tree19NextDepthFirstNodeREj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC773" class="line" lang="plaintext"> _ZNK6muscle4Tree20FirstDepthFirstNodeREv@Base 3.7+4565</span>
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774
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<pre style="margin: 0;">+<span id="LC774" class="line" lang="plaintext"> _ZNK6muscle4Tree20GetLeafCountUnrootedEjjPd@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC775" class="line" lang="plaintext"> _ZNK6muscle4Tree20GetNeighborSubscriptEjj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC776" class="line" lang="plaintext"> _ZNK6muscle4Tree20LeafIndexToNodeIndexEj@Base 3.7+4565</span>
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777
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<pre style="margin: 0;">+<span id="LC777" class="line" lang="plaintext"> _ZNK6muscle4Tree5LogMeEv@Base 3.7+4565</span>
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778
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<pre style="margin: 0;">+<span id="LC778" class="line" lang="plaintext"> _ZNK6muscle4Tree6IsEdgeEjj@Base 3.7+4565</span>
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779
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<pre style="margin: 0;">+<span id="LC779" class="line" lang="plaintext"> _ZNK6muscle4Tree6NTTStrENS_17NEWICK_TOKEN_TYPEE@Base 3.7+4565</span>
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780
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<pre style="margin: 0;">+<span id="LC780" class="line" lang="plaintext"> _ZNK6muscle4Tree6ToFileERNS_8TextFileE@Base 3.7+4565</span>
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781
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<pre style="margin: 0;">+<span id="LC781" class="line" lang="plaintext"> _ZNK6muscle4Tree8GetTokenERNS_8TextFileEPcj@Base 3.7+4565</span>
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782
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<pre style="margin: 0;">+<span id="LC782" class="line" lang="plaintext"> _ZNK6muscle4Tree8ValidateEv@Base 3.7+4565</span>
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783
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<pre style="margin: 0;">+<span id="LC783" class="line" lang="plaintext"> _ZNK6muscle4Tree9GetLeafIdEj@Base 3.7+4565</span>
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784
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<pre style="margin: 0;">+<span id="LC784" class="line" lang="plaintext"> _ZNK6muscle5Clust11GetNodeNameEj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC785" class="line" lang="plaintext"> _ZNK6muscle5Clust11VectorIndexEjj@Base 3.7+4565</span>
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786
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<pre style="margin: 0;">+<span id="LC786" class="line" lang="plaintext"> _ZNK6muscle5Clust12GetLeafCountEv@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC787" class="line" lang="plaintext"> _ZNK6muscle5Clust12GetLeftIndexEj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC788" class="line" lang="plaintext"> _ZNK6muscle5Clust12GetMinMetricEPjS1_@Base 3.7+4565</span>
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789
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<pre style="margin: 0;">+<span id="LC789" class="line" lang="plaintext"> _ZNK6muscle5Clust13ComputeMetricEjj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC790" class="line" lang="plaintext"> _ZNK6muscle5Clust13GetRightIndexEj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC791" class="line" lang="plaintext"> _ZNK6muscle5Clust14GetClusterSizeEj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC792" class="line" lang="plaintext"> _ZNK6muscle5Clust14GetNextClusterEj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC793" class="line" lang="plaintext"> _ZNK6muscle5Clust15GetClusterCountEv@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC794" class="line" lang="plaintext"> _ZNK6muscle5Clust15GetFirstClusterEv@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC795" class="line" lang="plaintext"> _ZNK6muscle5Clust22GetMinMetricBruteForceEPjS1_@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC796" class="line" lang="plaintext"> _ZNK6muscle5Clust28ComputeMetricNearestNeighborEjj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC797" class="line" lang="plaintext"> _ZNK6muscle5Clust28ComputeMetricNeighborJoiningEjj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC798" class="line" lang="plaintext"> _ZNK6muscle5Clust5LogMeEv@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC799" class="line" lang="plaintext"> _ZNK6muscle5Clust6Calc_rEj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC800" class="line" lang="plaintext"> _ZNK6muscle5Clust6IsLeafEj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC801" class="line" lang="plaintext"> _ZNK6muscle5Clust7GetDistEjj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC802" class="line" lang="plaintext"> _ZNK6muscle5Clust7GetLeafEjj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC803" class="line" lang="plaintext"> _ZNK6muscle5Clust7GetNodeEj@Base 3.7+4565</span>
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804
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<pre style="margin: 0;">+<span id="LC804" class="line" lang="plaintext"> _ZNK6muscle5Clust9GetHeightEj@Base 3.7+4565</span>
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805
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<pre style="margin: 0;">+<span id="LC805" class="line" lang="plaintext"> _ZNK6muscle5Clust9GetLengthEj@Base 3.7+4565</span>
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806
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<pre style="margin: 0;">+<span id="LC806" class="line" lang="plaintext"> _ZNK6muscle5Clust9GetNodeIdEj@Base 3.7+4565</span>
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807
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<pre style="margin: 0;">+<span id="LC807" class="line" lang="plaintext"> _ZNK6muscle6PWPath11AssertEqualERKS0_@Base 3.7+4565</span>
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808
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<pre style="margin: 0;">+<span id="LC808" class="line" lang="plaintext"> _ZNK6muscle6PWPath13GetMatchCountEv@Base 3.7+4565</span>
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809
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<pre style="margin: 0;">+<span id="LC809" class="line" lang="plaintext"> _ZNK6muscle6PWPath14GetDeleteCountEv@Base 3.7+4565</span>
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810
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<pre style="margin: 0;">+<span id="LC810" class="line" lang="plaintext"> _ZNK6muscle6PWPath14GetInsertCountEv@Base 3.7+4565</span>
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811
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<pre style="margin: 0;">+<span id="LC811" class="line" lang="plaintext"> _ZNK6muscle6PWPath5EqualERKS0_@Base 3.7+4565</span>
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812
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<pre style="margin: 0;">+<span id="LC812" class="line" lang="plaintext"> _ZNK6muscle6PWPath5LogMeEv@Base 3.7+4565</span>
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813
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<pre style="margin: 0;">+<span id="LC813" class="line" lang="plaintext"> _ZNK6muscle6PWPath6ToFileERNS_8TextFileE@Base 3.7+4565</span>
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814
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<pre style="margin: 0;">+<span id="LC814" class="line" lang="plaintext"> _ZNK6muscle6PWPath7GetEdgeEj@Base 3.7+4565</span>
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815
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<pre style="margin: 0;">+<span id="LC815" class="line" lang="plaintext"> _ZNK6muscle6PWPath8ValidateEv@Base 3.7+4565</span>
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816
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<pre style="margin: 0;">+<span id="LC816" class="line" lang="plaintext"> _ZNK6muscle7SeqVect10GetSeqNameEj@Base 3.7+4565</span>
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817
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<pre style="margin: 0;">+<span id="LC817" class="line" lang="plaintext"> _ZNK6muscle7SeqVect10GuessAlphaEv@Base 3.7+4565</span>
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818
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<pre style="margin: 0;">+<span id="LC818" class="line" lang="plaintext"> _ZNK6muscle7SeqVect11ToFASTAFileERNS_8TextFileE@Base 3.7+4565</span>
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819
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<pre style="margin: 0;">+<span id="LC819" class="line" lang="plaintext"> _ZNK6muscle7SeqVect12GetSeqLengthEj@Base 3.7+4565</span>
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820
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<pre style="margin: 0;">+<span id="LC820" class="line" lang="plaintext"> _ZNK6muscle7SeqVect16GetSeqIdFromNameEPKc@Base 3.7+4565</span>
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821
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<pre style="margin: 0;">+<span id="LC821" class="line" lang="plaintext"> _ZNK6muscle7SeqVect5LogMeEv@Base 3.7+4565</span>
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822
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<pre style="margin: 0;">+<span id="LC822" class="line" lang="plaintext"> _ZNK6muscle7SeqVect6GetSeqEj@Base 3.7+4565</span>
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823
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<pre style="margin: 0;">+<span id="LC823" class="line" lang="plaintext"> _ZNK6muscle7SeqVect8FindNameEPKcPj@Base 3.7+4565</span>
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824
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<pre style="margin: 0;">+<span id="LC824" class="line" lang="plaintext"> _ZNK6muscle7SeqVect8GetSeqIdEj@Base 3.7+4565</span>
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825
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<pre style="margin: 0;">+<span id="LC825" class="line" lang="plaintext"> _ZNK6muscle8DiagList19NonZeroIntersectionERKNS_4DiagE@Base 3.7+4565</span>
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826
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<pre style="margin: 0;">+<span id="LC826" class="line" lang="plaintext"> _ZNK6muscle8DiagList3GetEj@Base 3.7+4565</span>
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827
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<pre style="margin: 0;">+<span id="LC827" class="line" lang="plaintext"> _ZNK6muscle8DiagList5LogMeEv@Base 3.7+4565</span>
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828
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<pre style="margin: 0;">+<span id="LC828" class="line" lang="plaintext"> _ZNK6muscle8DiagList8IsSortedEv@Base 3.7+4565</span>
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829
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<pre style="margin: 0;">+<span id="LC829" class="line" lang="plaintext"> _ZNK6muscle8DistFunc11VectorIndexEjj@Base 3.7+4565</span>
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830
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<pre style="margin: 0;">+<span id="LC830" class="line" lang="plaintext"> _ZNK6muscle8DistFunc12VectorLengthEv@Base 3.7+4565</span>
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831
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<pre style="margin: 0;">+<span id="LC831" class="line" lang="plaintext"> _ZNK6muscle8DistFunc5GetIdEj@Base 3.7+4565</span>
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832
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<pre style="margin: 0;">+<span id="LC832" class="line" lang="plaintext"> _ZNK6muscle8DistFunc5LogMeEv@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC833" class="line" lang="plaintext"> _ZNK6muscle8DistFunc7GetDistEjj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC834" class="line" lang="plaintext"> _ZNK6muscle8DistFunc7GetNameEj@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC835" class="line" lang="plaintext"> _ZNK6muscle8DistFunc8GetCountEv@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC836" class="line" lang="plaintext"> _ZNK6muscle8EdgeList5LogMeEv@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC837" class="line" lang="plaintext"> _ZNK6muscle8EdgeList7GetEdgeEjPjS1_@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC838" class="line" lang="plaintext"> _ZNK6muscle8EdgeList8GetCountEv@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC839" class="line" lang="plaintext"> _ZNSt6vectorIPN6muscle3SeqESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC840" class="line" lang="plaintext"> _ZNSt6vectorIcSaIcEE17_M_realloc_insertIJRKcEEEvN9__gnu_cxx17__normal_iteratorIPcS1_EEDpOT_@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC843" class="line" lang="plaintext"> _ZTIN6muscle10ClustSetDFE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC844" class="line" lang="plaintext"> _ZTIN6muscle10DistCalcDFE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC847" class="line" lang="plaintext"> _ZTIN6muscle11DistCalcMSAE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC848" class="line" lang="plaintext"> _ZTIN6muscle12DistCalcTestE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC853" class="line" lang="plaintext"> _ZTIN6muscle6PWPathE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC854" class="line" lang="plaintext"> _ZTIN6muscle7SeqVectE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC855" class="line" lang="plaintext"> _ZTIN6muscle8ClustSetE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC856" class="line" lang="plaintext"> _ZTIN6muscle8DistCalcE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC858" class="line" lang="plaintext"> _ZTIN6muscle8EdgeListE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC860" class="line" lang="plaintext"> _ZTISt12_Vector_baseIPN6muscle3SeqESaIS2_EE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC862" class="line" lang="plaintext"> _ZTISt6vectorIPN6muscle3SeqESaIS2_EE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC863" class="line" lang="plaintext"> _ZTISt6vectorIcSaIcEE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC864" class="line" lang="plaintext"> _ZTSN6muscle10ClustSetDFE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC865" class="line" lang="plaintext"> _ZTSN6muscle10DistCalcDFE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC866" class="line" lang="plaintext"> _ZTSN6muscle11ClustSetMSAE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC867" class="line" lang="plaintext"> _ZTSN6muscle11ClusterTreeE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC869" class="line" lang="plaintext"> _ZTSN6muscle12DistCalcTestE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC871" class="line" lang="plaintext"> _ZTSN6muscle3SeqE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC872" class="line" lang="plaintext"> _ZTSN6muscle4TreeE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC873" class="line" lang="plaintext"> _ZTSN6muscle5ClustE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC874" class="line" lang="plaintext"> _ZTSN6muscle6PWPathE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC875" class="line" lang="plaintext"> _ZTSN6muscle7SeqVectE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC876" class="line" lang="plaintext"> _ZTSN6muscle8ClustSetE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC877" class="line" lang="plaintext"> _ZTSN6muscle8DistCalcE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC878" class="line" lang="plaintext"> _ZTSN6muscle8DistFuncE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC879" class="line" lang="plaintext"> _ZTSN6muscle8EdgeListE@Base 3.7+4565</span>
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880
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<pre style="margin: 0;">+<span id="LC880" class="line" lang="plaintext"> _ZTSN6muscle8TextFileE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC881" class="line" lang="plaintext"> _ZTSSt12_Vector_baseIPN6muscle3SeqESaIS2_EE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC882" class="line" lang="plaintext"> _ZTSSt12_Vector_baseIcSaIcEE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC883" class="line" lang="plaintext"> _ZTSSt6vectorIPN6muscle3SeqESaIS2_EE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC884" class="line" lang="plaintext"> _ZTSSt6vectorIcSaIcEE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC885" class="line" lang="plaintext"> _ZTVN6muscle10ClustSetDFE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC886" class="line" lang="plaintext"> _ZTVN6muscle10DistCalcDFE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC887" class="line" lang="plaintext"> _ZTVN6muscle11ClustSetMSAE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC888" class="line" lang="plaintext"> _ZTVN6muscle11ClusterTreeE@Base 3.7+4565</span>
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889
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<pre style="margin: 0;">+<span id="LC889" class="line" lang="plaintext"> _ZTVN6muscle11DistCalcMSAE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC890" class="line" lang="plaintext"> _ZTVN6muscle12DistCalcTestE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC891" class="line" lang="plaintext"> _ZTVN6muscle3MSAE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC892" class="line" lang="plaintext"> _ZTVN6muscle3SeqE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC893" class="line" lang="plaintext"> _ZTVN6muscle4TreeE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC894" class="line" lang="plaintext"> _ZTVN6muscle5ClustE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC895" class="line" lang="plaintext"> _ZTVN6muscle6PWPathE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC896" class="line" lang="plaintext"> _ZTVN6muscle7SeqVectE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC897" class="line" lang="plaintext"> _ZTVN6muscle8DistFuncE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC898" class="line" lang="plaintext"> _ZTVN6muscle8EdgeListE@Base 3.7+4565</span>
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899
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<pre style="margin: 0;">+<span id="LC899" class="line" lang="plaintext"> _ZTVN6muscle8TextFileE@Base 3.7+4565</span>
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<pre style="margin: 0;">+<span id="LC900" class="line" lang="plaintext"> _ZZNK6muscle12DistCalcTest13CalcDistRangeEjPfE8TestDist@Base 3.7+4565</span></pre>
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