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<h3>
Alexandre Mestiashvili pushed to branch master
at <a href="https://salsa.debian.org/med-team/gmap">Debian Med / gmap</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/gmap/commit/cdd6771ee19341b2ed886c6663f1954b8cb01a13">cdd6771e</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2018-07-17T10:36:56+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gmap/commit/a4cb5e9649af4eb54246cdba1928eb65e9754ec8">a4cb5e96</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2018-07-17T10:39:54+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update Uploader's email
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gmap/commit/0245e4990ffcf8787675b679e2cfb053f8a7b2e3">0245e499</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2018-07-17T10:40:42+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Drop libgmap1{,-dev} package as there is no use cases so far
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gmap/commit/7c3f35b8530fde6740d31d80bf637f9ba2bae867">7c3f35b8</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2018-07-17T10:44:54+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove --enable-shared from configure options
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gmap/commit/48198582899589634f3dbd6ae5474eb0ea55b36e">48198582</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2018-07-17T10:53:05+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove install files for libgmap1*
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gmap/commit/58f6af00468d2cec106073f8bcb22d223999aade">58f6af00</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2018-07-17T11:00:48+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove d/gmap.install
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gmap/commit/ada0e0cc6178eb659cd5e326ebf19011196a01a0">ada0e0cc</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2018-07-17T11:53:21+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update d/copyright, remove section for src/saca-k*, update email
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gmap/commit/510a474a06717b615d330b54e0f9d2a251c64940">510a474a</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2018-07-17T14:25:16+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update d/rules, fix directory path
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gmap/commit/e7dd7737d7d29f5d7c8fd7dc95eb8300a5b98223">e7dd7737</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2018-07-17T14:41:40+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update lintian-overrides, remove *.nosimd binaries
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gmap/commit/5a7493d4c40f323cce47e31c1acb012d49796864">5a7493d4</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2018-07-17T15:22:42+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update d/filter.pl to fix gmap man page
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gmap/commit/357b3e417556c02dfd597de24620a7b88c5faeaf">357b3e41</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2018-07-17T16:13:24+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add autopkgtest
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gmap/commit/9cbfd02df072bd78519cd8cc391086b8dff66d4b">9cbfd02d</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2018-07-17T16:53:36+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update d/rules to install tests data into examples
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gmap/commit/ca2e2386107089d53603b7d1628a4fc38b19bbd2">ca2e2386</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2018-07-17T17:07:27+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update autopkgtest to use test files from examples
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gmap/commit/ed55e39bc3cb67f63551564df5ca6e4279caac43">ed55e39b</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2018-07-17T17:09:22+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update changelog
Gbp-Dch: Ignore
</pre>
</li>
</ul>
<h4>13 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#a79a25c442bd06dd79c2e917f5637fe81069168b">
debian/filter.pl
</a>
</li>
<li class="file-stats">
<a href="#8674ec0ea655fd47bc9f3716213aebf76cf99877">
<span class="deleted-file">
−
debian/gmap.install
</span>
</a>
</li>
<li class="file-stats">
<a href="#9b1c96f41649b1cf2caca14d85df2a48f1e06d13">
debian/gmap.lintian-overrides
</a>
</li>
<li class="file-stats">
<a href="#a72d564a70bd09112d01f9939dd823d96b91a832">
<span class="deleted-file">
−
debian/libgmap1-dev.install
</span>
</a>
</li>
<li class="file-stats">
<a href="#805ea7859f46c429b524f85e4d24e28974c0aa0b">
<span class="deleted-file">
−
debian/libgmap1.install
</span>
</a>
</li>
<li class="file-stats">
<a href="#cf8e676580f58505defea2a2e5ffb4d106b5d5a4">
<span class="deleted-file">
−
debian/libgmap1.symbols
</span>
</a>
</li>
<li class="file-stats">
<a href="#cdc0f38341bcf0af07662569d0a0088b01f34fd3">
debian/patches/install-data-local
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#83223a554d33ba7e1888274ff8ac43adb8147ba0">
<span class="new-file">
+
debian/tests/control
</span>
</a>
</li>
<li class="file-stats">
<a href="#ef70495ea7387cd7c070ffea5ff5f713ca67043b">
<span class="new-file">
+
debian/tests/gmap-tests
</span>
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/gmap/compare/51b72cd208f276e4c1a93e10e5532f2b562627d9...ed55e39bc3cb67f63551564df5ca6e4279caac43#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
<hr>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="line_content noteable_line old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">gmap (2018-07-04-1) <span class="idiff left right">UNRELEASED</span>; urgency=medium</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">gmap (2018-07-04-1) <span class="idiff left right">unstable</span>; urgency=medium</span>
</pre>
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2
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
3
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> [ Steffen Möller ]</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
4
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Updated bio.tools RRID in d/u/metadata</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
5
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * Update metadata</span>
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<td class="diff-line-num new old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
7
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> [ Andreas Tille ]</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3
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<td class="diff-line-num new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> * Cleanup d/rules</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4
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<td class="diff-line-num new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> * New upstream version</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> * debhelper 11</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
11
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> * Point Vcs fields to salsa.debian.org</span>
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<td class="diff-line-num old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> * Standards-Version: 4.1.5</span>
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<td class="diff-line-num old old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> * libgmap1-dev Depends: gmap, libgmap1 (instead of alternative)</span>
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<td class="diff-line-num old old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> Closes: #903793</span>
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10
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Tue, 17 Jul 2018 07:24:19 +0200</span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> [ Alexandre Mestiashvili ]</span>
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<td class="diff-line-num new new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> * Refresh patches</span>
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<td class="diff-line-num new new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> * d/control:</span>
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<td class="diff-line-num new new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> - update Uploader's email</span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> - drop libgmap1{,-dev} as there is no use cases so far</span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> Closes: #903793</span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> * Update d/rules:</span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> - remove --enable-shared as we dropped libgmap1</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> - add stanza to install tests files to examples</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> * Remove install files for libgmap1*</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> * Update d/copyright, remove section for src/saca-k*, update email</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> * Update lintian-overrides, remove *.nosimd binaries</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> * Update d/filter.pl to fix gmap man page</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> * Add autopkgtest</span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> -- Alexandre Mestiashvili <mestia@debian.org> Tue, 17 Jul 2018 17:07:39 +0200</span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext">gmap (2017-11-15-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"></span>
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<a href="https://salsa.debian.org/med-team/gmap/compare/51b72cd208f276e4c1a93e10e5532f2b562627d9...ed55e39bc3cb67f63551564df5ca6e4279caac43#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,7 +2,7 @@ Source: gmap</td>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Uploaders: Shaun Jackman <sjackman@debian.org>,</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> Andreas Tille <tille@debian.org>,</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> Alexandre Mestiashvili <<span class="idiff left right">alex@biotec.tu-dresden.de</span>></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> Alexandre Mestiashvili <<span class="idiff left right">mestia@debian.org</span>></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Section: non-free/science</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">XS-Autobuild: no</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">Priority: optional</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -32,36 +32,3 @@ Description: spliced and SNP-tolerant alignment for mRNA and short reads</td>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> * known splice sites and identify novel splice sites.</span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> * known single-nucleotide polymorphisms (SNPs).</span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> GSNAP can align bisulfite-treated DNA.</span></pre>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="plaintext">Package: libgmap1</span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="plaintext">Architecture: any</span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="plaintext">Section: non-free/libs</span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="plaintext">Depends: ${misc:Depends},</span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="plaintext"> ${shlibs:Depends}</span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="plaintext">Description: library for gmap tool</span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="plaintext"> This package contains library for gmap tool.</span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="plaintext"> GMAP (Genomic Mapping and Alignment Program) is a tool for aligning</span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="plaintext"> EST, mRNA and cDNA sequences.</span>
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="plaintext"> GSNAP (Genomic Short-read Nucleotide Alignment Program) is a tool for</span>
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="plaintext"> aligning single-end and paired-end transcriptome reads.</span>
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<pre style="margin: 0;">-<span id="LC47" class="line" lang="plaintext"> Both tools can use a database of</span>
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="plaintext"> * known splice sites and identify novel splice sites.</span>
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<pre style="margin: 0;">-<span id="LC49" class="line" lang="plaintext"> * known single-nucleotide polymorphisms (SNPs).</span>
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<pre style="margin: 0;">-<span id="LC50" class="line" lang="plaintext"> GSNAP can align bisulfite-treated DNA.</span>
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="plaintext">Package: libgmap1-dev</span>
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="plaintext">Architecture: any</span>
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="plaintext">Section: non-free/libdevel</span>
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<pre style="margin: 0;">-<span id="LC55" class="line" lang="plaintext">Depends: gmap (= ${binary:Version}),</span>
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56
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<pre style="margin: 0;">-<span id="LC56" class="line" lang="plaintext"> libgmap1 (= ${binary:Version}),</span>
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="plaintext"> ${misc:Depends}</span>
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="plaintext">Description: development files for gmap</span>
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59
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="plaintext"> This package contains header files for gmap.</span>
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60
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="plaintext"> GMAP (Genomic Mapping and Alignment Program) is a tool for aligning</span>
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61
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<pre style="margin: 0;">-<span id="LC61" class="line" lang="plaintext"> EST, mRNA and cDNA sequences.</span>
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62
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<pre style="margin: 0;">-<span id="LC62" class="line" lang="plaintext"> GSNAP (Genomic Short-read Nucleotide Alignment Program) is a tool for</span>
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63
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<pre style="margin: 0;">-<span id="LC63" class="line" lang="plaintext"> aligning single-end and paired-end transcriptome reads.</span>
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64
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<pre style="margin: 0;">-<span id="LC64" class="line" lang="plaintext"> Both tools can use a database of</span>
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65
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<pre style="margin: 0;">-<span id="LC65" class="line" lang="plaintext"> * known splice sites and identify novel splice sites.</span>
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<td class="diff-line-num old old_line" data-linenumber="66" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
66
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<pre style="margin: 0;">-<span id="LC66" class="line" lang="plaintext"> * known single-nucleotide polymorphisms (SNPs).</span>
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67
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<pre style="margin: 0;">-<span id="LC67" class="line" lang="plaintext"> GSNAP can align bisulfite-treated DNA.</span></pre>
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<a href="https://salsa.debian.org/med-team/gmap/compare/51b72cd208f276e4c1a93e10e5532f2b562627d9...ed55e39bc3cb67f63551564df5ca6e4279caac43#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,6 +2,8 @@ Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/</td>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Upstream-Name: GMAP</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Upstream-Contact: Thomas Wu <twu@gene.com>, Colin K. Watanabe <ckw@gene.com></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Source: http://research-pub.gene.com/gmap/</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">Comment: gmap is in contirb/non-free due to the license,</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> see also https://lists.debian.org/debian-med/2017/09/msg00013.html</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">Files: *</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">Copyright: 2011-2014 Genentech, Inc.</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -105,27 +107,6 @@ License: X11</td>
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="plaintext"> dealings in this Software without prior written authorization from the X</span>
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="plaintext"> Consortium.</span>
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="plaintext"></span>
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108
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<pre style="margin: 0;">-<span id="LC108" class="line" lang="plaintext">Files: src/saca-k*</span>
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109
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<pre style="margin: 0;">-<span id="LC109" class="line" lang="plaintext">Copyright: 2012 Ge Nong <issng@mail.sysu.edu.cn></span>
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110
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<pre style="margin: 0;">-<span id="LC110" class="line" lang="plaintext">License: Expat</span>
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111
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<pre style="margin: 0;">-<span id="LC111" class="line" lang="plaintext"> Permission is hereby granted, free of charge, to any person obtaining a copy</span>
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112
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<pre style="margin: 0;">-<span id="LC112" class="line" lang="plaintext"> of this software and associated documentation files (the "Software"), to deal</span>
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<pre style="margin: 0;">-<span id="LC113" class="line" lang="plaintext"> in the Software without restriction, including without limitation the rights</span>
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<pre style="margin: 0;">-<span id="LC114" class="line" lang="plaintext"> to use, copy, modify, merge, publish, distribute, sublicense, and/or sell</span>
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<pre style="margin: 0;">-<span id="LC115" class="line" lang="plaintext"> copies of the Software, and to permit persons to whom the Software is</span>
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<pre style="margin: 0;">-<span id="LC116" class="line" lang="plaintext"> furnished to do so, subject to the following conditions:</span>
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<pre style="margin: 0;">-<span id="LC117" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">-<span id="LC118" class="line" lang="plaintext"> The above copyright notice and this permission notice shall be included in</span>
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<pre style="margin: 0;">-<span id="LC119" class="line" lang="plaintext"> all copies or substantial portions of the Software.</span>
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<pre style="margin: 0;">-<span id="LC120" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">-<span id="LC121" class="line" lang="plaintext"> THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR</span>
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<pre style="margin: 0;">-<span id="LC122" class="line" lang="plaintext"> IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,</span>
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<pre style="margin: 0;">-<span id="LC123" class="line" lang="plaintext"> FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE</span>
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<pre style="margin: 0;">-<span id="LC124" class="line" lang="plaintext"> AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER</span>
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<pre style="margin: 0;">-<span id="LC125" class="line" lang="plaintext"> LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,</span>
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<pre style="margin: 0;">-<span id="LC126" class="line" lang="plaintext"> OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN</span>
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<pre style="margin: 0;">-<span id="LC127" class="line" lang="plaintext"> THE SOFTWARE.</span>
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<pre style="margin: 0;">-<span id="LC128" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="plaintext">Files: src/fastlog.h</span>
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111
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="plaintext">Copyright: 2012 Paul Mineiro <paul@mineiro.com></span>
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131
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112
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="plaintext">License: BSD-3-clause</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="165" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -165,7 +146,7 @@ License: BSD-3-clause</td>
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165
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146
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="plaintext">Files: debian/*</span>
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166
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147
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<pre style="margin: 0;"> <span id="LC147" class="line" lang="plaintext">Copyright: 2011 Shaun Jackman <sjackman@debian.org></span>
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167
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<pre style="margin: 0;"> <span id="LC148" class="line" lang="plaintext"> 2012-2014 Andreas Tille <tille@debian.org></span>
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<td class="diff-line-num old old_line" data-linenumber="168" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
168
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<pre style="margin: 0;">-<span id="LC168" class="line" lang="plaintext"> 2016 Alex Mestiashvili <<span class="idiff left right">alex@biotec.tu-dresden.de</span>></span>
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149
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<pre style="margin: 0;">+<span id="LC149" class="line" lang="plaintext"> 2016 Alex Mestiashvili <<span class="idiff left right">mestia@debian.org</span>></span>
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169
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150
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<pre style="margin: 0;"> <span id="LC150" class="line" lang="plaintext">License: ISC</span>
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<td class="diff-line-num old_line" data-linenumber="170" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
170
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151
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<pre style="margin: 0;"> <span id="LC151" class="line" lang="plaintext"> Permission to use, copy, modify, and/or distribute this software for any</span>
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171
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<pre style="margin: 0;"> <span id="LC152" class="line" lang="plaintext"> purpose with or without fee is hereby granted, provided that the above</span>
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<br>
</li>
<li id="a79a25c442bd06dd79c2e917f5637fe81069168b">
<a href="https://salsa.debian.org/med-team/gmap/compare/51b72cd208f276e4c1a93e10e5532f2b562627d9...ed55e39bc3cb67f63551564df5ca6e4279caac43#a79a25c442bd06dd79c2e917f5637fe81069168b"><strong>debian/filter.pl</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -30,7 +30,15 @@ while ( <STDIN> ) {</td>
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30
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30
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="perl"> <span class="sr" style="color: #009926;">s/(^5\s{6}see\snote\s.*)/ $1/gmxs</span><span class="p">;</span></span>
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31
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="perl"> <span class="sr" style="color: #009926;">s/(^Examples:\n\.TP)/\.TP\n$1/gmsx</span><span class="p">;</span></span>
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32
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="perl"> <span class="sr" style="color: #009926;">s/(.*be\schanged)\n\.TP\n(by\sproviding.*)/$1 $2/gmsx</span><span class="p">;</span></span>
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33
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="perl"> <span class="c1" style="color: #998; font-style: italic;">#gmap aligning</span></span>
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33
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="perl"> <span class="c1" style="color: #998; font-style: italic;">#fix gmap_build header</span></span>
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35
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="perl"> <span class="c1" style="color: #998; font-style: italic;">#s/(^Batch\smode\s\(default\s=\s2\)\n)(Mode.*)/$1\n $2/gmxs;</span></span>
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36
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="perl"> <span class="sr" style="color: #009926;">s/(^\.TP\n)(0)(\n)(mmap\s.*)/ $2 $4/gmxs</span><span class="p">;</span></span>
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37
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="perl"> <span class="sr" style="color: #009926;">s/(^\.TP\n)(1)(\n)(mmap\s.*)/ $2 $4/gmxs</span><span class="p">;</span></span>
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38
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="perl"> <span class="sr" style="color: #009926;">s/(^\.TP\n)(\(default\))(\n)(2\s{6}mmap.*)/ $2 $4/gmxs</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="perl"> <span class="sr" style="color: #009926;">s/(^3\s{6}allocate.*)/ $1/gmxs</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="perl"> <span class="sr" style="color: #009926;">s/(^4\s{6}allocate.*)/ $1/gmxs</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="perl"> <span class="sr" style="color: #009926;">s/(^5\s{6}allocate.*)/ $1/gmxs</span><span class="p">;</span></span>
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34
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42
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="perl"> <span class="sr" style="color: #009926;">s/(^\.SH\sDESCRIPTION\n)Unknown.*\.PP/$1/gmsx</span><span class="p">;</span></span>
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35
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43
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="perl"> <span class="k" style="font-weight: 600;">print</span><span class="p">;</span></span>
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36
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44
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="perl"><span class="p">}</span></span>
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<a href="https://salsa.debian.org/med-team/gmap/compare/51b72cd208f276e4c1a93e10e5532f2b562627d9...ed55e39bc3cb67f63551564df5ca6e4279caac43#8674ec0ea655fd47bc9f3716213aebf76cf99877"><strong>debian/gmap.install</strong>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="php"><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/</span><span class="nx">gmap</span><span class="o" style="font-weight: 600;">/*</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/</span><span class="nx">gmap</span></span></pre>
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<a href="https://salsa.debian.org/med-team/gmap/compare/51b72cd208f276e4c1a93e10e5532f2b562627d9...ed55e39bc3cb67f63551564df5ca6e4279caac43#9b1c96f41649b1cf2caca14d85df2a48f1e06d13"><strong>debian/gmap.lintian-overrides</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">gmap: binary-without-manpage usr/bin/gmap.sse41</span>
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2
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">gmap: binary-without-manpage usr/bin/gmap.nosimd</span>
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3
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">gmap: binary-without-manpage usr/bin/gsnap.sse41</span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext">gmap: binary-without-manpage usr/bin/gsnap.nosimd</span>
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5
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<td class="diff-line-num new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">gmap: binary-without-manpage usr/bin/gmapl</span>
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<td class="diff-line-num old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
6
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">gmap: binary-without-manpage usr/bin/gmapl.sse41</span>
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7
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">gmap: binary-without-manpage usr/bin/gmapl.nosimd</span>
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<td class="diff-line-num old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8
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5
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">gmap: binary-without-manpage usr/bin/gsnapl</span>
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<td class="diff-line-num old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">gmap: binary-without-manpage usr/bin/gsnapl.sse41</span></pre>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext">gmap: binary-without-manpage usr/bin/gsnapl.nosimd</span></pre>
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<a href="https://salsa.debian.org/med-team/gmap/compare/51b72cd208f276e4c1a93e10e5532f2b562627d9...ed55e39bc3cb67f63551564df5ca6e4279caac43#a72d564a70bd09112d01f9939dd823d96b91a832"><strong>debian/libgmap1-dev.install</strong>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="php"><span class="c1" style="color: #998; font-style: italic;">#! /usr/bin/dh-exec</span></span>
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2
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="php"><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="k" style="font-weight: 600;">include</span><span class="o" style="font-weight: 600;">/*</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="k" style="font-weight: 600;">include</span><span class="o" style="font-weight: 600;">/</span><span class="nx">gmap</span></span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="php"><span class="nx">src</span><span class="o" style="font-weight: 600;">/.</span><span class="nx">libs</span><span class="o" style="font-weight: 600;">/</span><span class="nx">libgmap</span><span class="o" style="font-weight: 600;">.</span><span class="nx">a</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">$</span><span class="p">{</span><span class="nx">DEB_HOST_MULTIARCH</span><span class="p">}</span></span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="php"><span class="nx">src</span><span class="o" style="font-weight: 600;">/.</span><span class="nx">libs</span><span class="o" style="font-weight: 600;">/</span><span class="nx">libgmap</span><span class="o" style="font-weight: 600;">.</span><span class="nx">so</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">$</span><span class="p">{</span><span class="nx">DEB_HOST_MULTIARCH</span><span class="p">}</span></span>
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5
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="php"></span></pre>
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<a href="https://salsa.debian.org/med-team/gmap/compare/51b72cd208f276e4c1a93e10e5532f2b562627d9...ed55e39bc3cb67f63551564df5ca6e4279caac43#805ea7859f46c429b524f85e4d24e28974c0aa0b"><strong>debian/libgmap1.install</strong>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="php"><span class="c1" style="color: #998; font-style: italic;">#! /usr/bin/dh-exec</span></span>
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2
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="php"><span class="nx">src</span><span class="o" style="font-weight: 600;">/.</span><span class="nx">libs</span><span class="o" style="font-weight: 600;">/</span><span class="nx">libgmap</span><span class="o" style="font-weight: 600;">.</span><span class="nx">so</span><span class="o" style="font-weight: 600;">.</span><span class="mi" style="color: #099;">1</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">$</span><span class="p">{</span><span class="nx">DEB_HOST_MULTIARCH</span><span class="p">}</span></span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="php"><span class="nx">src</span><span class="o" style="font-weight: 600;">/.</span><span class="nx">libs</span><span class="o" style="font-weight: 600;">/</span><span class="nx">libgmap</span><span class="o" style="font-weight: 600;">.</span><span class="nx">so</span><span class="o" style="font-weight: 600;">.</span><span class="mf" style="color: #099;">1.0</span><span class="o" style="font-weight: 600;">.</span><span class="mi" style="color: #099;">0</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/</span><span class="err" style="color: #a61717; background-color: #e3d2d2;">$</span><span class="p">{</span><span class="nx">DEB_HOST_MULTIARCH</span><span class="p">}</span></span></pre>
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<a href="https://salsa.debian.org/med-team/gmap/compare/51b72cd208f276e4c1a93e10e5532f2b562627d9...ed55e39bc3cb67f63551564df5ca6e4279caac43#cf8e676580f58505defea2a2e5ffb4d106b5d5a4"><strong>debian/libgmap1.symbols</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">libgmap.so.1 libgmap1 #MINVER#</span>
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2
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext"> Access_allocate_private@Base 2017-10-30</span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext"> Access_allocate_shared@Base 2017-10-30</span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"> Access_controlled_cleanup@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> Access_deallocate@Base 2017-10-30</span>
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6
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> Access_emergency_cleanup@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> Access_file_copy@Base 2017-10-30</span>
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8
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> Access_file_equal@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> Access_file_exists_p@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> Access_fileio@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> Access_fileio_rw@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> Access_filesize@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> Access_mmap@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> Access_mmap_and_preload@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> Access_mmap_offset@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> Access_mmap_offset_rw@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> Access_mmap_rw@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> Access_setup@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> Assert_Failed@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> Bigendian_convert_double@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> Bigendian_convert_int@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> Bigendian_convert_uint8@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> Bigendian_convert_uint@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> Bigendian_fileio_read_uint8@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext"> Bigendian_fread_int@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext"> Bigendian_fread_ints@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext"> Bigendian_fread_uint8@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext"> Bigendian_fread_uint8s@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="plaintext"> Bytecoding_lcpchilddc_child_next@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="plaintext"> Bytecoding_lcpchilddc_lcp@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="plaintext"> Bytecoding_lcpchilddc_lcp_next@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="plaintext"> Bytecoding_read@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="plaintext"> Bytecoding_read_wguide@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC55" class="line" lang="plaintext"> Bytecoding_write@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC56" class="line" lang="plaintext"> Bytecoding_write_bytes@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="plaintext"> Bytecoding_write_exceptions_only@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="plaintext"> Bytecoding_write_lcpchilddc@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="plaintext"> Bzip2_free@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="plaintext"> Bzip2_new@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC61" class="line" lang="plaintext"> Chrnum_length@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC62" class="line" lang="plaintext"> Chrnum_offset@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC63" class="line" lang="plaintext"> Chrnum_print_position@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC64" class="line" lang="plaintext"> Chrnum_to_string@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC65" class="line" lang="plaintext"> Chrnum_to_string_signed@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC66" class="line" lang="plaintext"> Chrom_altlocp@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC67" class="line" lang="plaintext"> Chrom_circularp@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC68" class="line" lang="plaintext"> Chrom_cmp_alpha@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC69" class="line" lang="plaintext"> Chrom_cmp_chrom@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC70" class="line" lang="plaintext"> Chrom_cmp_numeric_alpha@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC71" class="line" lang="plaintext"> Chrom_cmp_order@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC72" class="line" lang="plaintext"> Chrom_compare_alpha@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC73" class="line" lang="plaintext"> Chrom_compare_chrom@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC74" class="line" lang="plaintext"> Chrom_compare_numeric_alpha@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC75" class="line" lang="plaintext"> Chrom_compare_order@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC76" class="line" lang="plaintext"> Chrom_compare_table@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC77" class="line" lang="plaintext"> Chrom_free@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC78" class="line" lang="plaintext"> Chrom_from_string@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC79" class="line" lang="plaintext"> Chrom_hash_table@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC80" class="line" lang="plaintext"> Chrom_string@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC81" class="line" lang="plaintext"> Chrpos_compare@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC82" class="line" lang="plaintext"> Compress_free@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC83" class="line" lang="plaintext"> Compress_get_16mer_left@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC84" class="line" lang="plaintext"> Compress_get_16mer_right@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC85" class="line" lang="plaintext"> Compress_nblocks@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC86" class="line" lang="plaintext"> Compress_new_fwd@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC87" class="line" lang="plaintext"> Compress_new_rev@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC88" class="line" lang="plaintext"> Compress_print@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC89" class="line" lang="plaintext"> Compress_print_blocks@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC90" class="line" lang="plaintext"> Compress_shift@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC91" class="line" lang="plaintext"> Datadir_avail_gmap_databases@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC92" class="line" lang="plaintext"> Datadir_avail_maps@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC93" class="line" lang="plaintext"> Datadir_find_genomedir@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC94" class="line" lang="plaintext"> Datadir_find_genomesubdir@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC95" class="line" lang="plaintext"> Datadir_find_mapdir@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC96" class="line" lang="plaintext"> Datadir_list_directory@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC97" class="line" lang="plaintext"> Datadir_list_directory_multicol@Base 2017-10-30</span>
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98
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<pre style="margin: 0;">-<span id="LC98" class="line" lang="plaintext"> Doublelist_fill_array@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC99" class="line" lang="plaintext"> Doublelist_free@Base 2017-10-30</span>
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100
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<pre style="margin: 0;">-<span id="LC100" class="line" lang="plaintext"> Doublelist_from_array@Base 2017-10-30</span>
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101
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<pre style="margin: 0;">-<span id="LC101" class="line" lang="plaintext"> Doublelist_from_string@Base 2017-10-30</span>
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102
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<pre style="margin: 0;">-<span id="LC102" class="line" lang="plaintext"> Doublelist_head@Base 2017-10-30</span>
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103
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<pre style="margin: 0;">-<span id="LC103" class="line" lang="plaintext"> Doublelist_keep_one@Base 2017-10-30</span>
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104
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<pre style="margin: 0;">-<span id="LC104" class="line" lang="plaintext"> Doublelist_length@Base 2017-10-30</span>
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105
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<pre style="margin: 0;">-<span id="LC105" class="line" lang="plaintext"> Doublelist_max@Base 2017-10-30</span>
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106
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<pre style="margin: 0;">-<span id="LC106" class="line" lang="plaintext"> Doublelist_min@Base 2017-10-30</span>
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107
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<pre style="margin: 0;">-<span id="LC107" class="line" lang="plaintext"> Doublelist_next@Base 2017-10-30</span>
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108
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<pre style="margin: 0;">-<span id="LC108" class="line" lang="plaintext"> Doublelist_pop@Base 2017-10-30</span>
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109
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<pre style="margin: 0;">-<span id="LC109" class="line" lang="plaintext"> Doublelist_print@Base 2017-10-30</span>
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110
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<pre style="margin: 0;">-<span id="LC110" class="line" lang="plaintext"> Doublelist_push@Base 2017-10-30</span>
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111
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<pre style="margin: 0;">-<span id="LC111" class="line" lang="plaintext"> Doublelist_reverse@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC112" class="line" lang="plaintext"> Doublelist_to_array@Base 2017-10-30</span>
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113
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<pre style="margin: 0;">-<span id="LC113" class="line" lang="plaintext"> Doublelist_to_array_out@Base 2017-10-30</span>
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114
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<pre style="margin: 0;">-<span id="LC114" class="line" lang="plaintext"> Except_advance_stack@Base 2017-10-30</span>
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115
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<pre style="margin: 0;">-<span id="LC115" class="line" lang="plaintext"> Except_inactivate@Base 2017-10-30</span>
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116
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<pre style="margin: 0;">-<span id="LC116" class="line" lang="plaintext"> Except_init_pthread@Base 2017-10-30</span>
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117
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<pre style="margin: 0;">-<span id="LC117" class="line" lang="plaintext"> Except_link_stack@Base 2017-10-30</span>
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118
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<pre style="margin: 0;">-<span id="LC118" class="line" lang="plaintext"> Except_raise@Base 2017-10-30</span>
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119
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<pre style="margin: 0;">-<span id="LC119" class="line" lang="plaintext"> Except_stack_create@Base 2017-10-30</span>
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120
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<pre style="margin: 0;">-<span id="LC120" class="line" lang="plaintext"> Except_stack_destroy@Base 2017-10-30</span>
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121
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<pre style="margin: 0;">-<span id="LC121" class="line" lang="plaintext"> Except_term_pthread@Base 2017-10-30</span>
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122
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<pre style="margin: 0;">-<span id="LC122" class="line" lang="plaintext"> Filestring_free@Base 2017-10-30</span>
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123
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<pre style="margin: 0;">-<span id="LC123" class="line" lang="plaintext"> Filestring_id@Base 2017-10-30</span>
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124
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<pre style="margin: 0;">-<span id="LC124" class="line" lang="plaintext"> Filestring_new@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC125" class="line" lang="plaintext"> Filestring_print@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC126" class="line" lang="plaintext"> Filestring_put@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC127" class="line" lang="plaintext"> Filestring_putc@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC128" class="line" lang="plaintext"> Filestring_puts@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC129" class="line" lang="plaintext"> Filestring_set_split_output@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC130" class="line" lang="plaintext"> Filestring_split_output@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC131" class="line" lang="plaintext"> Filestring_stringify@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC132" class="line" lang="plaintext"> Genome_blocks@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC133" class="line" lang="plaintext"> Genome_consecutive_matches_leftward@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC134" class="line" lang="plaintext"> Genome_consecutive_matches_pair@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC135" class="line" lang="plaintext"> Genome_consecutive_matches_rightward@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC136" class="line" lang="plaintext"> Genome_count_mismatches_fragment_left@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC137" class="line" lang="plaintext"> Genome_count_mismatches_fragment_right@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC138" class="line" lang="plaintext"> Genome_count_mismatches_limit@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC139" class="line" lang="plaintext"> Genome_count_mismatches_substring@Base 2017-10-30</span>
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140
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<pre style="margin: 0;">-<span id="LC140" class="line" lang="plaintext"> Genome_count_mismatches_substring_ref@Base 2017-10-30</span>
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141
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<pre style="margin: 0;">-<span id="LC141" class="line" lang="plaintext"> Genome_fill_buffer@Base 2017-10-30</span>
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142
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<pre style="margin: 0;">-<span id="LC142" class="line" lang="plaintext"> Genome_fill_buffer_blocks@Base 2017-10-30</span>
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143
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<pre style="margin: 0;">-<span id="LC143" class="line" lang="plaintext"> Genome_fill_buffer_blocks_noterm@Base 2017-10-30</span>
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144
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<pre style="margin: 0;">-<span id="LC144" class="line" lang="plaintext"> Genome_fill_buffer_convert_fwd@Base 2017-10-30</span>
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145
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<pre style="margin: 0;">-<span id="LC145" class="line" lang="plaintext"> Genome_fill_buffer_convert_rev@Base 2017-10-30</span>
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146
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<pre style="margin: 0;">-<span id="LC146" class="line" lang="plaintext"> Genome_fill_buffer_int_string@Base 2017-10-30</span>
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147
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<pre style="margin: 0;">-<span id="LC147" class="line" lang="plaintext"> Genome_fill_buffer_nucleotides@Base 2017-10-30</span>
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148
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<pre style="margin: 0;">-<span id="LC148" class="line" lang="plaintext"> Genome_fill_buffer_simple@Base 2017-10-30</span>
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149
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<pre style="margin: 0;">-<span id="LC149" class="line" lang="plaintext"> Genome_fill_buffer_simple_alt@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC150" class="line" lang="plaintext"> Genome_free@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC151" class="line" lang="plaintext"> Genome_get_char@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC152" class="line" lang="plaintext"> Genome_get_char_blocks@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC153" class="line" lang="plaintext"> Genome_get_char_lex@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC154" class="line" lang="plaintext"> Genome_get_segment@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC155" class="line" lang="plaintext"> Genome_get_segment_alt@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC156" class="line" lang="plaintext"> Genome_get_segment_blocks_left@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC157" class="line" lang="plaintext"> Genome_get_segment_blocks_right@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC158" class="line" lang="plaintext"> Genome_get_segment_snp@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC159" class="line" lang="plaintext"> Genome_hr_setup@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC160" class="line" lang="plaintext"> Genome_mark_mismatches@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC161" class="line" lang="plaintext"> Genome_mark_mismatches_ref@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC162" class="line" lang="plaintext"> Genome_mismatches_left@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC163" class="line" lang="plaintext"> Genome_mismatches_left_trim@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC164" class="line" lang="plaintext"> Genome_mismatches_right@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC165" class="line" lang="plaintext"> Genome_mismatches_right_trim@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC166" class="line" lang="plaintext"> Genome_new@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC167" class="line" lang="plaintext"> Genome_ntcounts@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC168" class="line" lang="plaintext"> Genome_setup@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC169" class="line" lang="plaintext"> Genome_totallength@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC170" class="line" lang="plaintext"> Genome_trim_left@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC171" class="line" lang="plaintext"> Genome_trim_right@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC172" class="line" lang="plaintext"> Genome_uncompress_memory@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC173" class="line" lang="plaintext"> Genome_uncompress_mmap@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC174" class="line" lang="plaintext"> Genome_user_setup@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC175" class="line" lang="plaintext"> Genomicpos_commafmt@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC176" class="line" lang="plaintext"> IIT_annotation@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC177" class="line" lang="plaintext"> IIT_annotation_firstchar@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC178" class="line" lang="plaintext"> IIT_annotation_strlen@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC179" class="line" lang="plaintext"> IIT_create@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC180" class="line" lang="plaintext"> IIT_debug@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC181" class="line" lang="plaintext"> IIT_divint@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC182" class="line" lang="plaintext"> IIT_divlength@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC183" class="line" lang="plaintext"> IIT_divstring@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC184" class="line" lang="plaintext"> IIT_divstring_from_index@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC185" class="line" lang="plaintext"> IIT_dump@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC186" class="line" lang="plaintext"> IIT_dump_divstrings@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC187" class="line" lang="plaintext"> IIT_dump_fieldstrings@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC188" class="line" lang="plaintext"> IIT_dump_labels@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC189" class="line" lang="plaintext"> IIT_dump_simple@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC190" class="line" lang="plaintext"> IIT_dump_typestrings@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC191" class="line" lang="plaintext"> IIT_exact_p@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC192" class="line" lang="plaintext"> IIT_exists_with_divno@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC193" class="line" lang="plaintext"> IIT_exists_with_divno_signed@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC194" class="line" lang="plaintext"> IIT_exists_with_divno_typed_signed@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC195" class="line" lang="plaintext"> IIT_fieldint@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC196" class="line" lang="plaintext"> IIT_fieldstring@Base 2017-10-30</span>
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197
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<pre style="margin: 0;">-<span id="LC197" class="line" lang="plaintext"> IIT_fieldvalue@Base 2017-10-30</span>
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198
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<pre style="margin: 0;">-<span id="LC198" class="line" lang="plaintext"> IIT_find@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC199" class="line" lang="plaintext"> IIT_find_linear@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC200" class="line" lang="plaintext"> IIT_find_one@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC201" class="line" lang="plaintext"> IIT_free@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC202" class="line" lang="plaintext"> IIT_gene_overlap@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC203" class="line" lang="plaintext"> IIT_gene_overlapp@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC204" class="line" lang="plaintext"> IIT_genestruct_chrpos@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC205" class="line" lang="plaintext"> IIT_get@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC206" class="line" lang="plaintext"> IIT_get_exact@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC207" class="line" lang="plaintext"> IIT_get_exact_multiple@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC208" class="line" lang="plaintext"> IIT_get_exact_multiple_with_divno@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC209" class="line" lang="plaintext"> IIT_get_flanking@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC210" class="line" lang="plaintext"> IIT_get_flanking_multiple_typed@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC211" class="line" lang="plaintext"> IIT_get_flanking_typed@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC212" class="line" lang="plaintext"> IIT_get_flanking_with_divno@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC213" class="line" lang="plaintext"> IIT_get_highs_for_low@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC214" class="line" lang="plaintext"> IIT_get_highs_signed@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC215" class="line" lang="plaintext"> IIT_get_lows_for_high@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC216" class="line" lang="plaintext"> IIT_get_lows_signed@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC217" class="line" lang="plaintext"> IIT_get_multiple_typed@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC218" class="line" lang="plaintext"> IIT_get_one@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC219" class="line" lang="plaintext"> IIT_get_signed@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC220" class="line" lang="plaintext"> IIT_get_signed_with_divno@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC221" class="line" lang="plaintext"> IIT_get_typed@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC222" class="line" lang="plaintext"> IIT_get_typed_signed@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC223" class="line" lang="plaintext"> IIT_get_typed_signed_with_divno@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC224" class="line" lang="plaintext"> IIT_get_typed_with_divno@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC225" class="line" lang="plaintext"> IIT_get_values_above@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC226" class="line" lang="plaintext"> IIT_get_values_below@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC227" class="line" lang="plaintext"> IIT_get_values_between@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC228" class="line" lang="plaintext"> IIT_get_with_divno@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC229" class="line" lang="plaintext"> IIT_high_exists_signed_p@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC230" class="line" lang="plaintext"> IIT_index@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC231" class="line" lang="plaintext"> IIT_interval@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC232" class="line" lang="plaintext"> IIT_interval_bounds@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC233" class="line" lang="plaintext"> IIT_interval_high@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC234" class="line" lang="plaintext"> IIT_interval_length@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC235" class="line" lang="plaintext"> IIT_interval_low@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC236" class="line" lang="plaintext"> IIT_interval_sign@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC237" class="line" lang="plaintext"> IIT_interval_type@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC238" class="line" lang="plaintext"> IIT_label@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC239" class="line" lang="plaintext"> IIT_length@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC240" class="line" lang="plaintext"> IIT_load@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC241" class="line" lang="plaintext"> IIT_low_exists_signed_p@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC242" class="line" lang="plaintext"> IIT_name@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC243" class="line" lang="plaintext"> IIT_ndivs@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC244" class="line" lang="plaintext"> IIT_nfields@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC245" class="line" lang="plaintext"> IIT_nintervals@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC246" class="line" lang="plaintext"> IIT_ntypes@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC247" class="line" lang="plaintext"> IIT_print_header@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC248" class="line" lang="plaintext"> IIT_read@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC249" class="line" lang="plaintext"> IIT_read_divint@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC250" class="line" lang="plaintext"> IIT_total_nintervals@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC251" class="line" lang="plaintext"> IIT_totallength@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC252" class="line" lang="plaintext"> IIT_typeint@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC253" class="line" lang="plaintext"> IIT_typelist@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC254" class="line" lang="plaintext"> IIT_typestring@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC255" class="line" lang="plaintext"> IIT_unique_positions@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC256" class="line" lang="plaintext"> IIT_unique_positions_given_others@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC257" class="line" lang="plaintext"> IIT_unique_splicep@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC258" class="line" lang="plaintext"> IIT_unique_splicep_given_others@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC259" class="line" lang="plaintext"> IIT_universalp@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC260" class="line" lang="plaintext"> IIT_valuep@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC261" class="line" lang="plaintext"> IIT_version@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC262" class="line" lang="plaintext"> IIT_write@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC263" class="line" lang="plaintext"> Interval_array_high@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC264" class="line" lang="plaintext"> Interval_array_low@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC265" class="line" lang="plaintext"> Interval_cmp@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC266" class="line" lang="plaintext"> Interval_cmp_high@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC267" class="line" lang="plaintext"> Interval_cmp_low@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC268" class="line" lang="plaintext"> Interval_cmp_low_struct@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC269" class="line" lang="plaintext"> Interval_copy@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC270" class="line" lang="plaintext"> Interval_copy_existing@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC271" class="line" lang="plaintext"> Interval_free@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC272" class="line" lang="plaintext"> Interval_high@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC273" class="line" lang="plaintext"> Interval_is_contained@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC274" class="line" lang="plaintext"> Interval_length@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC275" class="line" lang="plaintext"> Interval_low@Base 2017-10-30</span>
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276
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<pre style="margin: 0;">-<span id="LC276" class="line" lang="plaintext"> Interval_new@Base 2017-10-30</span>
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277
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<pre style="margin: 0;">-<span id="LC277" class="line" lang="plaintext"> Interval_overlap_p@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC278" class="line" lang="plaintext"> Interval_print@Base 2017-10-30</span>
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279
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<pre style="margin: 0;">-<span id="LC279" class="line" lang="plaintext"> Interval_qsort_by_omega@Base 2017-10-30</span>
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280
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<pre style="margin: 0;">-<span id="LC280" class="line" lang="plaintext"> Interval_qsort_by_sigma@Base 2017-10-30</span>
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281
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<pre style="margin: 0;">-<span id="LC281" class="line" lang="plaintext"> Interval_sign@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC282" class="line" lang="plaintext"> Interval_store_length@Base 2017-10-30</span>
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283
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<pre style="margin: 0;">-<span id="LC283" class="line" lang="plaintext"> Interval_type@Base 2017-10-30</span>
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284
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<pre style="margin: 0;">-<span id="LC284" class="line" lang="plaintext"> Interval_windex_cmp@Base 2017-10-30</span>
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285
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<pre style="margin: 0;">-<span id="LC285" class="line" lang="plaintext"> Intlist_append@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC286" class="line" lang="plaintext"> Intlist_array_ascending_by_key@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC287" class="line" lang="plaintext"> Intlist_array_dual_ascending_by_key@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC288" class="line" lang="plaintext"> Intlist_copy@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC289" class="line" lang="plaintext"> Intlist_delete@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC290" class="line" lang="plaintext"> Intlist_equal@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC291" class="line" lang="plaintext"> Intlist_exists_p@Base 2017-10-30</span>
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292
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<pre style="margin: 0;">-<span id="LC292" class="line" lang="plaintext"> Intlist_fill_array@Base 2017-10-30</span>
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293
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<pre style="margin: 0;">-<span id="LC293" class="line" lang="plaintext"> Intlist_fill_array_and_free@Base 2017-10-30</span>
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294
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<pre style="margin: 0;">-<span id="LC294" class="line" lang="plaintext"> Intlist_free@Base 2017-10-30</span>
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295
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<pre style="margin: 0;">-<span id="LC295" class="line" lang="plaintext"> Intlist_free_in@Base 2017-10-30</span>
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296
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<pre style="margin: 0;">-<span id="LC296" class="line" lang="plaintext"> Intlist_from_array@Base 2017-10-30</span>
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297
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<pre style="margin: 0;">-<span id="LC297" class="line" lang="plaintext"> Intlist_from_string@Base 2017-10-30</span>
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298
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<pre style="margin: 0;">-<span id="LC298" class="line" lang="plaintext"> Intlist_head@Base 2017-10-30</span>
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299
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<pre style="margin: 0;">-<span id="LC299" class="line" lang="plaintext"> Intlist_head_set@Base 2017-10-30</span>
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300
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<pre style="margin: 0;">-<span id="LC300" class="line" lang="plaintext"> Intlist_index@Base 2017-10-30</span>
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301
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<pre style="margin: 0;">-<span id="LC301" class="line" lang="plaintext"> Intlist_insert_second@Base 2017-10-30</span>
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<td class="diff-line-num old old_line" data-linenumber="302" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
302
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<pre style="margin: 0;">-<span id="LC302" class="line" lang="plaintext"> Intlist_keep_one@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC303" class="line" lang="plaintext"> Intlist_last_value@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC304" class="line" lang="plaintext"> Intlist_length@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC305" class="line" lang="plaintext"> Intlist_list_ascending_by_key@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC306" class="line" lang="plaintext"> Intlist_list_descending_by_key@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC307" class="line" lang="plaintext"> Intlist_max@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC308" class="line" lang="plaintext"> Intlist_min@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC309" class="line" lang="plaintext"> Intlist_next@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC310" class="line" lang="plaintext"> Intlist_pop@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC311" class="line" lang="plaintext"> Intlist_push@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC312" class="line" lang="plaintext"> Intlist_push_in@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC313" class="line" lang="plaintext"> Intlist_reverse@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC314" class="line" lang="plaintext"> Intlist_sort_ascending@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC315" class="line" lang="plaintext"> Intlist_to_array@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC316" class="line" lang="plaintext"> Intlist_to_array_out@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC317" class="line" lang="plaintext"> Intlist_to_char_array@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC318" class="line" lang="plaintext"> Intlist_to_char_array_in@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC319" class="line" lang="plaintext"> Intlist_to_string@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC320" class="line" lang="plaintext"> Intlist_vary@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC321" class="line" lang="plaintext"> List_append@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC322" class="line" lang="plaintext"> List_copy@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC323" class="line" lang="plaintext"> List_dump@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC324" class="line" lang="plaintext"> List_fill_array@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC325" class="line" lang="plaintext"> List_fill_array_and_free@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC326" class="line" lang="plaintext"> List_fill_array_with_handle@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC327" class="line" lang="plaintext"> List_free@Base 2017-10-30</span>
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328
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<pre style="margin: 0;">-<span id="LC328" class="line" lang="plaintext"> List_free_keep@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC329" class="line" lang="plaintext"> List_free_out@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC330" class="line" lang="plaintext"> List_from_string@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC331" class="line" lang="plaintext"> List_head@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC332" class="line" lang="plaintext"> List_head_set@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC333" class="line" lang="plaintext"> List_index@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC334" class="line" lang="plaintext"> List_insert@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC335" class="line" lang="plaintext"> List_last_item@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC336" class="line" lang="plaintext"> List_last_value@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC337" class="line" lang="plaintext"> List_length@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC338" class="line" lang="plaintext"> List_next@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC339" class="line" lang="plaintext"> List_pop@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC340" class="line" lang="plaintext"> List_pop_out@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC341" class="line" lang="plaintext"> List_push@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC342" class="line" lang="plaintext"> List_push_existing@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC343" class="line" lang="plaintext"> List_push_keep@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC344" class="line" lang="plaintext"> List_push_out@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC345" class="line" lang="plaintext"> List_reinsert@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC346" class="line" lang="plaintext"> List_reverse@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC347" class="line" lang="plaintext"> List_tail_set@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC348" class="line" lang="plaintext"> List_to_array@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC349" class="line" lang="plaintext"> List_to_array_n@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC350" class="line" lang="plaintext"> List_to_array_out@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC351" class="line" lang="plaintext"> List_to_array_out_n@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC352" class="line" lang="plaintext"> List_transfer_one@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC353" class="line" lang="plaintext"> List_truncate@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC358" class="line" lang="plaintext"> MD5_compute@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC359" class="line" lang="plaintext"> MD5_print@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC360" class="line" lang="plaintext"> Maxent_hr_acceptor_prob@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC361" class="line" lang="plaintext"> Maxent_hr_antiacceptor_prob@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC362" class="line" lang="plaintext"> Maxent_hr_antidonor_prob@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC363" class="line" lang="plaintext"> Maxent_hr_donor_prob@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC364" class="line" lang="plaintext"> Maxent_hr_setup@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC365" class="line" lang="plaintext"> Mem_Failed@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC366" class="line" lang="plaintext"> Mem_Leak@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC367" class="line" lang="plaintext"> Mem_alloc@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC368" class="line" lang="plaintext"> Mem_alloc_in@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC369" class="line" lang="plaintext"> Mem_alloc_keep@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC370" class="line" lang="plaintext"> Mem_alloc_no_exception@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC371" class="line" lang="plaintext"> Mem_alloc_out@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC372" class="line" lang="plaintext"> Mem_calloc@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC373" class="line" lang="plaintext"> Mem_calloc_in@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC374" class="line" lang="plaintext"> Mem_calloc_keep@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC375" class="line" lang="plaintext"> Mem_calloc_no_exception@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC376" class="line" lang="plaintext"> Mem_calloc_out@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC377" class="line" lang="plaintext"> Mem_free@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC378" class="line" lang="plaintext"> Mem_free_in@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC379" class="line" lang="plaintext"> Mem_free_keep@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC380" class="line" lang="plaintext"> Mem_free_out@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC381" class="line" lang="plaintext"> Mem_resize@Base 2017-10-30</span>
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382
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<pre style="margin: 0;">-<span id="LC382" class="line" lang="plaintext"> Parserange_iscoordp@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC383" class="line" lang="plaintext"> Parserange_islengthp@Base 2017-10-30</span>
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384
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<pre style="margin: 0;">-<span id="LC384" class="line" lang="plaintext"> Parserange_israngep@Base 2017-10-30</span>
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385
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<pre style="margin: 0;">-<span id="LC385" class="line" lang="plaintext"> Parserange_query@Base 2017-10-30</span>
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386
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<pre style="margin: 0;">-<span id="LC386" class="line" lang="plaintext"> Parserange_simple@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC387" class="line" lang="plaintext"> Parserange_universal@Base 2017-10-30</span>
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388
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<pre style="margin: 0;">-<span id="LC388" class="line" lang="plaintext"> Parserange_universal_iit@Base 2017-10-30</span>
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389
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<pre style="margin: 0;">-<span id="LC389" class="line" lang="plaintext"> Sarray_array@Base 2017-10-30</span>
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390
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<pre style="margin: 0;">-<span id="LC390" class="line" lang="plaintext"> Sarray_free@Base 2017-10-30</span>
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391
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<pre style="margin: 0;">-<span id="LC391" class="line" lang="plaintext"> Sarray_lookup@Base 2017-10-30</span>
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392
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<pre style="margin: 0;">-<span id="LC392" class="line" lang="plaintext"> Sarray_new@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC393" class="line" lang="plaintext"> Sarray_position@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC394" class="line" lang="plaintext"> Sarray_read@Base 2017-10-30</span>
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395
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<pre style="margin: 0;">-<span id="LC395" class="line" lang="plaintext"> Sarray_size@Base 2017-10-30</span>
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396
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<pre style="margin: 0;">-<span id="LC396" class="line" lang="plaintext"> Semaphore_create@Base 2017-10-30</span>
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397
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<pre style="margin: 0;">-<span id="LC397" class="line" lang="plaintext"> Semaphore_delete@Base 2017-10-30</span>
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398
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<pre style="margin: 0;">-<span id="LC398" class="line" lang="plaintext"> Semaphore_find@Base 2017-10-30</span>
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399
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<pre style="margin: 0;">-<span id="LC399" class="line" lang="plaintext"> Semaphore_get_value@Base 2017-10-30</span>
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400
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<pre style="margin: 0;">-<span id="LC400" class="line" lang="plaintext"> Semaphore_lock@Base 2017-10-30</span>
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401
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<pre style="margin: 0;">-<span id="LC401" class="line" lang="plaintext"> Semaphore_nwaiting@Base 2017-10-30</span>
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402
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<pre style="margin: 0;">-<span id="LC402" class="line" lang="plaintext"> Semaphore_set_value@Base 2017-10-30</span>
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403
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<pre style="margin: 0;">-<span id="LC403" class="line" lang="plaintext"> Semaphore_unlock@Base 2017-10-30</span>
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404
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<pre style="margin: 0;">-<span id="LC404" class="line" lang="plaintext"> Sequence_accession@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC405" class="line" lang="plaintext"> Sequence_alias@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC406" class="line" lang="plaintext"> Sequence_firstp@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC407" class="line" lang="plaintext"> Sequence_free@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC408" class="line" lang="plaintext"> Sequence_fulllength@Base 2017-10-30</span>
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409
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<pre style="margin: 0;">-<span id="LC409" class="line" lang="plaintext"> Sequence_fulllength_given@Base 2017-10-30</span>
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410
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<pre style="margin: 0;">-<span id="LC410" class="line" lang="plaintext"> Sequence_fullpointer@Base 2017-10-30</span>
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411
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<pre style="margin: 0;">-<span id="LC411" class="line" lang="plaintext"> Sequence_genomic_new@Base 2017-10-30</span>
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412
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<pre style="margin: 0;">-<span id="LC412" class="line" lang="plaintext"> Sequence_input_init@Base 2017-10-30</span>
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413
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<pre style="margin: 0;">-<span id="LC413" class="line" lang="plaintext"> Sequence_input_init_bzip2@Base 2017-10-30</span>
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414
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<pre style="margin: 0;">-<span id="LC414" class="line" lang="plaintext"> Sequence_input_init_gzip@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC415" class="line" lang="plaintext"> Sequence_ntlength@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC416" class="line" lang="plaintext"> Sequence_print@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC417" class="line" lang="plaintext"> Sequence_print_digest@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC418" class="line" lang="plaintext"> Sequence_print_header@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC419" class="line" lang="plaintext"> Sequence_quality_string@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC420" class="line" lang="plaintext"> Sequence_read@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC421" class="line" lang="plaintext"> Sequence_read_multifile@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC422" class="line" lang="plaintext"> Sequence_read_unlimited@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC423" class="line" lang="plaintext"> Sequence_revcomp@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC424" class="line" lang="plaintext"> Sequence_skiplength@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC425" class="line" lang="plaintext"> Sequence_stdout@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC426" class="line" lang="plaintext"> Sequence_stdout_alt@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC427" class="line" lang="plaintext"> Sequence_stdout_header@Base 2017-10-30</span>
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428
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<pre style="margin: 0;">-<span id="LC428" class="line" lang="plaintext"> Sequence_stdout_raw@Base 2017-10-30</span>
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429
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<pre style="margin: 0;">-<span id="LC429" class="line" lang="plaintext"> Sequence_stdout_stream_chars@Base 2017-10-30</span>
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430
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<pre style="margin: 0;">-<span id="LC430" class="line" lang="plaintext"> Sequence_stdout_stream_ints@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC431" class="line" lang="plaintext"> Sequence_stdout_two@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC432" class="line" lang="plaintext"> Sequence_subseq_length@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC433" class="line" lang="plaintext"> Sequence_subseq_offset@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC434" class="line" lang="plaintext"> Sequence_subseq_pointer@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC435" class="line" lang="plaintext"> Sequence_subsequence@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC436" class="line" lang="plaintext"> Sequence_substring@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC437" class="line" lang="plaintext"> Sequence_trim@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC438" class="line" lang="plaintext"> Sequence_trim_end@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC439" class="line" lang="plaintext"> Sequence_trim_start@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC440" class="line" lang="plaintext"> Sequence_trimlength@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC441" class="line" lang="plaintext"> Sequence_trimpointer@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC442" class="line" lang="plaintext"> Sequence_uppercase@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC443" class="line" lang="plaintext"> Stopwatch_free@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC444" class="line" lang="plaintext"> Stopwatch_new@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC445" class="line" lang="plaintext"> Stopwatch_start@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC446" class="line" lang="plaintext"> Stopwatch_stop@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC447" class="line" lang="plaintext"> Table_free@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC448" class="line" lang="plaintext"> Table_gc@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC449" class="line" lang="plaintext"> Table_get@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC450" class="line" lang="plaintext"> Table_keys@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC451" class="line" lang="plaintext"> Table_keys_by_timeindex@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC452" class="line" lang="plaintext"> Table_length@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC453" class="line" lang="plaintext"> Table_map@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC454" class="line" lang="plaintext"> Table_new@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC455" class="line" lang="plaintext"> Table_put@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC456" class="line" lang="plaintext"> Table_remove@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC457" class="line" lang="plaintext"> Table_remove_old_key@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC458" class="line" lang="plaintext"> Table_string_compare@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC459" class="line" lang="plaintext"> Table_string_hash@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC460" class="line" lang="plaintext"> Table_values@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC461" class="line" lang="plaintext"> Tableuint_free@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC462" class="line" lang="plaintext"> Tableuint_get@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC463" class="line" lang="plaintext"> Tableuint_keys@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC464" class="line" lang="plaintext"> Tableuint_keys_by_timeindex@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC465" class="line" lang="plaintext"> Tableuint_length@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC466" class="line" lang="plaintext"> Tableuint_map@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC467" class="line" lang="plaintext"> Tableuint_new@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC468" class="line" lang="plaintext"> Tableuint_put@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC469" class="line" lang="plaintext"> Tableuint_remove@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC470" class="line" lang="plaintext"> Tableuint_values@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC471" class="line" lang="plaintext"> UINT4_compare@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC472" class="line" lang="plaintext"> UINT8_compare@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC473" class="line" lang="plaintext"> Uint8list_append@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC474" class="line" lang="plaintext"> Uint8list_copy@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC475" class="line" lang="plaintext"> Uint8list_fill_array@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC476" class="line" lang="plaintext"> Uint8list_fill_array_and_free@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC477" class="line" lang="plaintext"> Uint8list_find@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC478" class="line" lang="plaintext"> Uint8list_free@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC479" class="line" lang="plaintext"> Uint8list_from_array@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC480" class="line" lang="plaintext"> Uint8list_head@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC481" class="line" lang="plaintext"> Uint8list_head_set@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC482" class="line" lang="plaintext"> Uint8list_index@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC483" class="line" lang="plaintext"> Uint8list_last_value@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC484" class="line" lang="plaintext"> Uint8list_length@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC485" class="line" lang="plaintext"> Uint8list_max@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC486" class="line" lang="plaintext"> Uint8list_min@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC487" class="line" lang="plaintext"> Uint8list_next@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC488" class="line" lang="plaintext"> Uint8list_pop@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC489" class="line" lang="plaintext"> Uint8list_push@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC490" class="line" lang="plaintext"> Uint8list_reverse@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC491" class="line" lang="plaintext"> Uint8list_to_array@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC492" class="line" lang="plaintext"> Uint8list_to_array_out@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC493" class="line" lang="plaintext"> Uint8list_to_string@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC494" class="line" lang="plaintext"> Uintlist_append@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC495" class="line" lang="plaintext"> Uintlist_copy@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC496" class="line" lang="plaintext"> Uintlist_fill_array@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC497" class="line" lang="plaintext"> Uintlist_fill_array_and_free@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC498" class="line" lang="plaintext"> Uintlist_find@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC499" class="line" lang="plaintext"> Uintlist_free@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC500" class="line" lang="plaintext"> Uintlist_from_array@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC501" class="line" lang="plaintext"> Uintlist_head@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC502" class="line" lang="plaintext"> Uintlist_head_set@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC503" class="line" lang="plaintext"> Uintlist_index@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC504" class="line" lang="plaintext"> Uintlist_keep_one@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC505" class="line" lang="plaintext"> Uintlist_last_value@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC506" class="line" lang="plaintext"> Uintlist_length@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC507" class="line" lang="plaintext"> Uintlist_max@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC508" class="line" lang="plaintext"> Uintlist_min@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC509" class="line" lang="plaintext"> Uintlist_next@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC510" class="line" lang="plaintext"> Uintlist_pop@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC511" class="line" lang="plaintext"> Uintlist_push@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC512" class="line" lang="plaintext"> Uintlist_reverse@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC513" class="line" lang="plaintext"> Uintlist_to_array@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC514" class="line" lang="plaintext"> Uintlist_to_array_out@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC515" class="line" lang="plaintext"> Uintlist_to_string@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC516" class="line" lang="plaintext"> Uinttable_fill_keys@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC517" class="line" lang="plaintext"> Uinttable_free@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC518" class="line" lang="plaintext"> Uinttable_get@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC519" class="line" lang="plaintext"> Uinttable_keys@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC520" class="line" lang="plaintext"> Uinttable_keys_by_timeindex@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC521" class="line" lang="plaintext"> Uinttable_length@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC522" class="line" lang="plaintext"> Uinttable_map@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC523" class="line" lang="plaintext"> Uinttable_new@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC524" class="line" lang="plaintext"> Uinttable_put@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC525" class="line" lang="plaintext"> Uinttable_remove@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC526" class="line" lang="plaintext"> Uinttable_values@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC527" class="line" lang="plaintext"> Uinttableuint_free@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC528" class="line" lang="plaintext"> Uinttableuint_get@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC529" class="line" lang="plaintext"> Uinttableuint_keys@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC530" class="line" lang="plaintext"> Uinttableuint_keys_by_timeindex@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC531" class="line" lang="plaintext"> Uinttableuint_length@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC532" class="line" lang="plaintext"> Uinttableuint_map@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC533" class="line" lang="plaintext"> Uinttableuint_new@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC534" class="line" lang="plaintext"> Uinttableuint_put@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC535" class="line" lang="plaintext"> Uinttableuint_remove@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC536" class="line" lang="plaintext"> Uinttableuint_values@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC598" class="line" lang="plaintext"> bzeof@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC599" class="line" lang="plaintext"> bzgetc@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC600" class="line" lang="plaintext"> bzgets@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC601" class="line" lang="plaintext"> clz_table@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC602" class="line" lang="plaintext"> count_bits@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC603" class="line" lang="plaintext"> global_except_stack@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC604" class="line" lang="plaintext"> mod_37_bit_position@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC605" class="line" lang="plaintext"> nt_oligo@Base 2017-10-30</span>
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<pre style="margin: 0;">-<span id="LC606" class="line" lang="plaintext"> nt_oligo_truncate@Base 2017-10-30</span>
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<a href="https://salsa.debian.org/med-team/gmap/compare/51b72cd208f276e4c1a93e10e5532f2b562627d9...ed55e39bc3cb67f63551564df5ca6e4279caac43#cdc0f38341bcf0af07662569d0a0088b01f34fd3"><strong>debian/patches/install-data-local</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,7 +2,7 @@ Description: Install data local</td>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- gmap.orig/Makefile.in</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ gmap/Makefile.in</span></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -84<span class="idiff left right">6,7 +846</span>,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -84<span class="idiff left right">7,7 +847</span>,7 @@</span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="diff"> install-data-local:</span>
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<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/gmap/compare/51b72cd208f276e4c1a93e10e5532f2b562627d9...ed55e39bc3cb67f63551564df5ca6e4279caac43#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -18,7 +18,7 @@ HELP2MAN = /usr/bin/help2man --no-info --version-string=${DEB_VERSION}</td>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> dh $@</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext">override_dh_auto_configure:</span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> dh_auto_configure -- --<span class="idiff left right">enable-shared --</span>with-gmapdb=/var/cache/gmap \</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> dh_auto_configure -- --with-gmapdb=/var/cache/gmap \</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> --bindir=/usr/lib/gmap $(EXTRA_CONFIGURE_ARGS)</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext">override_dh_auto_install:</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -32,13 +32,22 @@ override_dh_auto_install:</td>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> dh_auto_install</span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext">override_dh_install:</span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext"> dh_install</span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> mkdir -p debian/$(DEB_SOURCE)/usr/bin</span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"> dh_install</span>
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37
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> for bin in `echo gmap gsnap gmap_build gmapl gsnapl; \</span>
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38
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="plaintext"> cd $(CURDIR)/debian/<span class="idiff left right">tmp</span>/usr/lib/$(DEB_SOURCE)/; \</span>
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38
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"> cd $(CURDIR)/debian/<span class="idiff left right">$(DEB_SOURCE)</span>/usr/lib/$(DEB_SOURCE)/; \</span>
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39
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39
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> ls -1 gmap*.* gsnap*.* `; do \</span>
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40
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40
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> ln -s /usr/lib/gmap/$$bin debian/$(DEB_SOURCE)/usr/bin/$$bin; \</span>
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41
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41
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> done</span>
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42
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42
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"></span>
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43
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43
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext">override_dh_auto_test:</span>
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44
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44
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> dh_auto_test --no-parallel</span>
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45
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"></span>
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46
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext">override_dh_installexamples:</span>
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47
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext"> mkdir $(CURDIR)/debian/$(DEB_SOURCE)/usr/share/doc/$(DEB_SOURCE)/examples</span>
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48
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext"> tar --sort=name \</span>
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49
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext"> --mtime="@${SOURCE_DATE_EPOCH}" \</span>
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50
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="plaintext"> --owner=root --group=root --numeric-owner \</span>
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51
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext"> --mode=go=rX,u+rw,a-s \</span>
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52
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext"> -cJf $(CURDIR)/debian/$(DEB_SOURCE)/usr/share/doc/$(DEB_SOURCE)/examples/tests.tar.xz tests</span>
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53
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="plaintext"> find . -print</span></pre>
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<a href="https://salsa.debian.org/med-team/gmap/compare/51b72cd208f276e4c1a93e10e5532f2b562627d9...ed55e39bc3cb67f63551564df5ca6e4279caac43#83223a554d33ba7e1888274ff8ac43adb8147ba0"><strong>debian/tests/control</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Tests: gmap-tests</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">Restrictions: allow-stderr</span></pre>
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<a href="https://salsa.debian.org/med-team/gmap/compare/51b72cd208f276e4c1a93e10e5532f2b562627d9...ed55e39bc3cb67f63551564df5ca6e4279caac43#ef70495ea7387cd7c070ffea5ff5f713ca67043b"><strong>debian/tests/gmap-tests</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#! /bin/bash</span></span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="shell"><span class="nb" style="color: #0086b3;">set</span> <span class="nt" style="color: navy;">-e</span></span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="shell"></span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="shell"><span class="nb" style="color: #0086b3;">readonly </span><span class="nv" style="color: teal;">tmpdir</span><span class="o" style="font-weight: 600;">=</span><span class="k" style="font-weight: 600;">$(</span><span class="nb" style="color: #0086b3;">mktemp</span> <span class="nt" style="color: navy;">-d</span><span class="k" style="font-weight: 600;">)</span></span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="shell"><span class="nb" style="color: #0086b3;">tar</span> <span class="nt" style="color: navy;">-xf</span> /usr/share/doc/gmap/examples/tests.tar.xz <span class="nt" style="color: navy;">-C</span> <span class="nv" style="color: teal;">$tmpdir</span></span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="shell"><span class="nb" style="color: #0086b3;">readonly </span><span class="nv" style="color: teal;">srcdir</span><span class="o" style="font-weight: 600;">=</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: teal;">tmpdir</span><span class="k" style="font-weight: 600;">}</span>/tests</span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="shell"></span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"align.test"</span></span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="shell">gmap <span class="nt" style="color: navy;">-A</span> <span class="nt" style="color: navy;">-g</span> <span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: teal;">srcdir</span><span class="k" style="font-weight: 600;">}</span>/ss.chr17test <span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: teal;">srcdir</span><span class="k" style="font-weight: 600;">}</span>/ss.her2 <span class="o" style="font-weight: 600;">></span> align.test.out</span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="shell">diff align.test.out <span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: teal;">srcdir</span><span class="k" style="font-weight: 600;">}</span>/align.test.ok</span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="shell"><span class="nb" style="color: #0086b3;">rm</span> <span class="nt" style="color: navy;">-f</span> align.test.out</span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="shell"></span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="shell"></span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"coords1.test"</span></span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="shell">/usr/lib/gmap/fa_coords <span class="nt" style="color: navy;">-o</span> coords.chr17test <span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: teal;">srcdir</span><span class="k" style="font-weight: 600;">}</span>/ss.chr17test</span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="shell">diff coords.chr17test <span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: teal;">srcdir</span><span class="k" style="font-weight: 600;">}</span>/coords1.test.ok</span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="shell"><span class="nb" style="color: #0086b3;">rm</span> <span class="nt" style="color: navy;">-f</span> coords.chr17test</span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="shell"></span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"iit.test"</span></span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="shell">/usr/lib/gmap/iit_store <span class="nt" style="color: navy;">-o</span> iittest <span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: teal;">srcdir</span><span class="k" style="font-weight: 600;">}</span>/fa.iittest</span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="shell">diff iittest.iit <span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: teal;">srcdir</span><span class="k" style="font-weight: 600;">}</span>/iittest.iit.ok</span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="shell"></span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="shell">/usr/lib/gmap/iit_get iittest.iit 20000 <span class="o" style="font-weight: 600;">></span> iit_get.out</span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="shell">diff iit_get.out <span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: teal;">srcdir</span><span class="k" style="font-weight: 600;">}</span>/iit_get.out.ok</span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="shell"></span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="shell">/usr/lib/gmap/iit_dump iittest.iit <span class="o" style="font-weight: 600;">></span> iit_dump.out</span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="shell">diff iit_dump.out <span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: teal;">srcdir</span><span class="k" style="font-weight: 600;">}</span>/fa.iittest</span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="shell"><span class="nb" style="color: #0086b3;">rm</span> <span class="nt" style="color: navy;">-f</span> iit_get.out</span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="shell"><span class="nb" style="color: #0086b3;">rm</span> <span class="nt" style="color: navy;">-f</span> iittest.iit</span>
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30
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="shell"><span class="nb" style="color: #0086b3;">rm</span> <span class="nt" style="color: navy;">-f</span> iit_dump.out</span>
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31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="shell"></span>
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32
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"setup1.test"</span></span>
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33
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="shell">gmap_build <span class="nt" style="color: navy;">-k</span> 15 <span class="nt" style="color: navy;">-B</span> /usr/lib/gmap <span class="nt" style="color: navy;">-D</span> <span class="nb" style="color: #0086b3;">.</span> <span class="nt" style="color: navy;">-d</span> chr17test <span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: teal;">srcdir</span><span class="k" style="font-weight: 600;">}</span>/ss.chr17test</span>
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34
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="shell"><span class="nb" style="color: #0086b3;">rm</span> <span class="nt" style="color: navy;">-rf</span> chr17test/</span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="shell"></span>
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36
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="shell"><span class="nb" style="color: #0086b3;">rm</span> <span class="nt" style="color: navy;">-rf</span> <span class="nv" style="color: teal;">$tmpdir</span></span></pre>
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