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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/parsnp">Debian Med / parsnp</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/parsnp/commit/73e1912af608c8434ac52e27463bb5dcd2748d18">73e1912a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-07-17T20:27:35+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debhelper 11
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/parsnp/commit/ac8bc935201f692b32b2dac805a6e425c71721ec">ac8bc935</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-07-17T20:28:11+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Point Vcs fields to salsa.debian.org
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/parsnp/commit/1f4987553980724f36f924f1edd6be52271a06d0">1f498755</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-07-17T20:28:11+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.1.5
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/parsnp/commit/47def69eb7f629445c117fe0816290d5205a006f">47def69e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-07-17T20:31:03+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove ancient x-python-version field
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/parsnp/commit/a6a188807aa89f92c46bb6bd65b17b0c82dc8426">a6a18880</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-07-17T20:32:03+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">do not parse d/changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/parsnp/commit/8d817b4e544998c11c5b7663bdf5525351d1616e">8d817b4e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-07-17T20:33:37+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>4 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
debian/compat
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/parsnp/compare/da66019b80427b20fcfe9b7fc09ad8dbbf051876...8d817b4e544998c11c5b7663bdf5525351d1616e#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">parsnp (1.2+dfsg-4) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
</pre>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * debhelper 11</span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Point Vcs fields to salsa.debian.org</span>
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * Standards-Version: 4.1.5</span>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * Remove ancient x-python-version field</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * d/rules: do not parse d/changelog</span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Tue, 17 Jul 2018 20:32:10 +0200</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">parsnp (1.2+dfsg-3) unstable; urgency=medium</span>
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<td class="diff-line-num new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content noteable_line" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> * Fix build when trying to link with -Wl, --as-needed (Thanks for the patch</span>
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</li>
<li id="78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<a href="https://salsa.debian.org/med-team/parsnp/compare/da66019b80427b20fcfe9b7fc09ad8dbbf051876...8d817b4e544998c11c5b7663bdf5525351d1616e#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4"><strong>debian/compat</strong></a>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">1<span class="idiff left right">0</span></span></pre>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">1<span class="idiff left right">1</span></span></pre>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/parsnp/compare/da66019b80427b20fcfe9b7fc09ad8dbbf051876...8d817b4e544998c11c5b7663bdf5525351d1616e#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,17 +3,15 @@ Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.</td>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Uploaders: Andreas Tille <tille@debian.org></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper (>= 10),</span>
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7
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> dh-autoreconf,</span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper (>= 11~),</span>
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8
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<td class="diff-line-num new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> python-all-dev,</span>
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9
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8
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> python-setuptools,</span>
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10
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<td class="diff-line-num new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> cython,</span>
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11
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10
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> libmuscle-3.7-dev</span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext">Standards-Version: <span class="idiff left right">3.9.8</span></span>
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<td class="diff-line-num old old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext">Vcs-Browser: https://<span class="idiff left right">anonscm.debian.org/cgit/debian-med/parsnp.git</span></span>
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14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext">Vcs-Git: https://<span class="idiff left right">anonscm.debian.org/git/debian-med</span>/parsnp.git</span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">Standards-Version: <span class="idiff left right">4.1.5</span></span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">Vcs-Browser: https://<span class="idiff left right">salsa.debian.org/med-team/parsnp</span></span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext">Vcs-Git: https://<span class="idiff left right">salsa.debian.org/med-team</span>/parsnp.git</span>
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15
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">Homepage: http://harvest.readthedocs.org/en/latest/content/parsnp.html</span>
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16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext">X-Python-Version: >= 2.7</span>
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17
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">Package: parsnp</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">Architecture: any</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -23,7 +21,7 @@ Depends: ${shlibs:Depends},</td>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> python-numpy,</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> fasttree,</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> mummer,</span>
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26
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext"> phipack<span class="idiff left right">,</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> phipack</span>
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27
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext">Recommends: python-dendropy</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext">Description: rapid core genome multi-alignment</span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> Parsnp was designed to align the core genome of hundreds to thousands of</span>
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<a href="https://salsa.debian.org/med-team/parsnp/compare/da66019b80427b20fcfe9b7fc09ad8dbbf051876...8d817b4e544998c11c5b7663bdf5525351d1616e#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,12 +2,12 @@</td>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"># DH_VERBOSE := 1</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"><span class="idiff left right">DEBPKGNAME := $(shell dpkg-parsechangelog | awk '/^Source:/ {print $$2}')</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"><span class="idiff left right">include /usr/share/dpkg/default.mk</span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">export DEB_BUILD_MAINT_OPTIONS = hardening=+all</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">%:</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> dh $@ --with python2<span class="idiff left right"> --with autoreconf</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> dh $@ --with python2</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">override_dh_auto_configure:</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> dh_auto_configure -- --with-libmuscle=/usr/include/libMUSCLE-3.7</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -15,9 +15,9 @@ override_dh_auto_configure:</td>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">override_dh_auto_install:</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> dh_auto_install</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> # The actual user interface is the Python script so move the binary to /usr/lib</span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> mkdir -p debian/$(DEB<span class="idiff left right">PKGNAME)/usr/lib/$(DEBPKGNAM</span>E)</span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> mv debian/$(DEB<span class="idiff left right">PKGNAME)/usr/bin/$(DEBPKGNAME) debian/$(DEBPKGNAME)/usr/lib/$(DEBPKGNAM</span>E)</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> mkdir -p debian/$(DEB<span class="idiff left right">_SOURCE)/usr/lib/$(DEB_SOURC</span>E)</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> mv debian/$(DEB<span class="idiff left right">_SOURCE)/usr/bin/$(DEB_SOURCE) debian/$(DEB_SOURCE)/usr/lib/$(DEB_SOURC</span>E)</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext">override_dh_fixperms:</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> dh_fixperms</span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> chmod -x debian/$(DEB<span class="idiff left right">PKGNAME)/usr/share/$(DEBPKGNAM</span>E)/template.ini</span></pre>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> chmod -x debian/$(DEB<span class="idiff left right">_SOURCE)/usr/share/$(DEB_SOURC</span>E)/template.ini</span></pre>
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