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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/ncbi-igblast">Debian Med / ncbi-igblast</a>
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<h4>
Commits:
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<strong><a href="https://salsa.debian.org/med-team/ncbi-igblast/commit/94d2dbd0081ec6d1eeaca47a35dac1c553b7fcaf">94d2dbd0</a></strong>
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<span>by David Miguel Susano Pinto</span>
<i>at 2018-07-17T13:56:35+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Initial packaging of ncbi-igblast
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<h4>8 changed files:</h4>
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debian/changelog
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debian/compat
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debian/control
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debian/copyright
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debian/rules
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debian/source/format
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debian/upstream/metadata
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debian/watch
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/ncbi-igblast/commit/94d2dbd0081ec6d1eeaca47a35dac1c553b7fcaf#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">ncbi-igblast (1.9.0-1) UNRELEASED; urgency=low</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Initial Release. (Closes: #903965)</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> -- David Miguel Susano Pinto <carandraug+dev@gmail.com> Wed, 11 Jul 2018 18:22:32 +0100</span></pre>
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<li id="78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<a href="https://salsa.debian.org/med-team/ncbi-igblast/commit/94d2dbd0081ec6d1eeaca47a35dac1c553b7fcaf#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4"><strong>debian/compat</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">11</span></pre>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/ncbi-igblast/commit/94d2dbd0081ec6d1eeaca47a35dac1c553b7fcaf#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Source: ncbi-igblast</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">Uploaders: David Miguel Susano Pinto <carandraug+dev@gmail.com></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper (>= 11)</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">Build-Depends-Indep: </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">Standards-Version: 4.1.5</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/ncbi-igblast</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/igblast.git</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">Homepage: https://ncbi.github.io/igblast/</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext">Package: ncbi-igblast</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">Architecture: any</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext">Depends:</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">Description: Immunoglobulin and T cell receptor variable domain sequence analysis</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> IgBLAST allows users to view the matches to the germline V, D, and J</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> genes, details at rearrangement junctions, the delineation of IG V</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> domain framework regions, and complementarity determining regions.</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> IgBLAST has the capability to analyse nucleotide and protein</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> sequences, and can process sequences in batches. Furthermore,</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> IgBLAST allows searches against the germline gene databases and other</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> sequence databases simultaneously to minimize the chance of missing</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> possibly the best matching germline V gene.</span></pre>
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<a href="https://salsa.debian.org/med-team/ncbi-igblast/commit/94d2dbd0081ec6d1eeaca47a35dac1c553b7fcaf#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">Source: https://ftp.ncbi.nih.gov/blast/executables/igblast/release/</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Upstream-Contact: blast-help@ncbi.nlm.nih.gov</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">Upstream-Name: NCBI</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">Files: *</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">Copyright: 2018, National Center for Biotechnology Information</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">License: PD</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">Files: debian/*</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">Copyright: 2018, David Miguel Susano Pinto <carandraug+dev@gmail.com></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">License: GPL-3+</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">License: PD</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> PUBLIC DOMAIN NOTICE</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> National Center for Biotechnology Information</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> This software/database is a "United States Government Work" under the</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> terms of the United States Copyright Act. It was written as part of</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> the author's official duties as a United States Government employee and</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> thus cannot be copyrighted. This software/database is freely available</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> to the public for use. The National Library of Medicine and the U.S.</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> Government have not placed any restriction on its use or reproduction.</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> Although all reasonable efforts have been taken to ensure the accuracy</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> and reliability of the software and data, the NLM and the U.S.</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> Government do not and cannot warrant the performance or results that</span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> may be obtained by using this software or data. The NLM and the U.S.</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> Government disclaim all warranties, express or implied, including</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> warranties of performance, merchantability or fitness for any particular</span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"> purpose.</span></pre>
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<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/ncbi-igblast/commit/94d2dbd0081ec6d1eeaca47a35dac1c553b7fcaf#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">#!/usr/bin/make -f</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">%:</span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> dh $@</span></pre>
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<li id="53399f7f2dd7535c43cdcfa511a9c06044a9c238">
<a href="https://salsa.debian.org/med-team/ncbi-igblast/commit/94d2dbd0081ec6d1eeaca47a35dac1c553b7fcaf#53399f7f2dd7535c43cdcfa511a9c06044a9c238"><strong>debian/source/format</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">3.0 (quilt)</span></pre>
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<li id="f5606a935d95a2f20059a7ac1136f47b2edadbf6">
<a href="https://salsa.debian.org/med-team/ncbi-igblast/commit/94d2dbd0081ec6d1eeaca47a35dac1c553b7fcaf#f5606a935d95a2f20059a7ac1136f47b2edadbf6"><strong>debian/upstream/metadata</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">---</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">Webservice: https://www.ncbi.nlm.nih.gov/igblast/</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Registry:</span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> - Name: bio.tools</span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> Entry: igblast</span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> - Name: OMICtools</span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> Entry: OMICS_06083</span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> - Name: SciCrunch</span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> Entry: SCR_002873</span></pre>
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<li id="68ef9f98c01c7eecd4c605cc26048a06f3304b79">
<a href="https://salsa.debian.org/med-team/ncbi-igblast/commit/94d2dbd0081ec6d1eeaca47a35dac1c553b7fcaf#68ef9f98c01c7eecd4c605cc26048a06f3304b79"><strong>debian/watch</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">version=4</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">https://ftp.ncbi.nlm.nih.gov/blast/executables/igblast/release/LATEST/ \</span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> ncbi-igblast-(.*)-src.tar.gz</span></pre>
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