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<h3>
Dylan Aïssi pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/snakemake">Debian Med / snakemake</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/snakemake/commit/6b298196cf30b1181b17884826a91977e8becb63">6b298196</a></strong>
<div>
<span>by Dylan Aïssi</span>
<i>at 2018-07-27T17:29:35Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 5.2.1</pre>
</li>
</ul>
<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#fd5da61396a8376845bee5cdf71aaf3c98a888ae">
.circleci/config.yml
</a>
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<li class="file-stats">
<a href="#ab09011fa121d0a2bb9fa4ca76094f2482b902b7">
CHANGELOG.md
</a>
</li>
<li class="file-stats">
<a href="#4d96bc0560e0c9e4668ccb39b500cece62a72820">
docs/project_info/authors.rst
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<li class="file-stats">
<a href="#3c7246c0b371cfd3a475428be04706178ca01f0f">
docs/project_info/faq.rst
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<li class="file-stats">
<a href="#678d7e50121966ef613372bf85b3e7f144e00ef1">
docs/snakefiles/remote_files.rst
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</li>
<li class="file-stats">
<a href="#dfeb7b6e739ba66056c1799c63a5a39c7698b59f">
docs/snakefiles/rules.rst
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</li>
<li class="file-stats">
<a href="#8e2edce0d507e1297474f25c00cae94258db38d8">
setup.py
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</li>
<li class="file-stats">
<a href="#d366205d7cd679ff6d4a61f70728e92537101763">
snakemake/__init__.py
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</li>
<li class="file-stats">
<a href="#5e16cbeea010f59dbef52f8950f4873c94f39c7e">
snakemake/_version.py
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<li class="file-stats">
<a href="#cc2e928f15e341aa118531053338930d0d215b9d">
snakemake/conda.py
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<li class="file-stats">
<a href="#9821437dfb3fff8383b6066a2a3c7aa3f6712a32">
snakemake/dag.py
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<li class="file-stats">
<a href="#f26ea241de6ff4cfc0be3675c4f2da7114bd889d">
snakemake/exceptions.py
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<li class="file-stats">
<a href="#1dba76c2cca537b789f8754f5ddbed5dc36c6dee">
snakemake/executors.py
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<li class="file-stats">
<a href="#e933119c7503fe1d48ce0b0d37492388705f5808">
snakemake/io.py
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<li class="file-stats">
<a href="#818384818c4671b8354b6eb98ee2bab61c015a74">
snakemake/jobs.py
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<li class="file-stats">
<a href="#3065d4749c6410564a20007bd7748abfda7699f6">
snakemake/report/__init__.py
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<li class="file-stats">
<a href="#7b2e7c5590f914b1c99d6d779757cc4e2527cd59">
snakemake/report/report.html
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<li class="file-stats">
<a href="#55752111e76e9d786fdb84c4e7fd9f6de5c67a24">
snakemake/rules.py
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<li class="file-stats">
<a href="#0ac0ac393192e0b6a8ebf767dd5e206b4afbf3b2">
snakemake/scheduler.py
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</li>
<li class="file-stats">
<a href="#890eb9a72c661585e32094a5a93e483c1b1a8c82">
snakemake/shell.py
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</li>
<li class="file-stats">
<a href="#f00d39cf87461717d695c7d7a12876173105fc19">
snakemake/singularity.py
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</li>
<li class="file-stats">
<a href="#9ca669a3173c07a202d199fb807e42d26441228e">
snakemake/utils.py
</a>
</li>
<li class="file-stats">
<a href="#cb9e107597e441fb1c0d61663359d9cf1dbfe04d">
snakemake/workflow.py
</a>
</li>
<li class="file-stats">
<a href="#d1deee71de70305809d43086b13f7eb407aff6f2">
test-environment.yml
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</li>
<li class="file-stats">
<a href="#472d67ebc73a6271f38a7f6a41036e989b48e1e2">
tests/test_default_remote/Snakefile
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</li>
<li class="file-stats">
<a href="#75f4086df44778a33e8c11e4ba3dab67a76bc825">
tests/test_delete_all_output/Snakefile
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</li>
<li class="file-stats">
<a href="#d3d1023e6579968192fe3a12e11dc8fb2d2b7f8b">
tests/test_delete_all_output/Snakefile_inner
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</li>
<li class="file-stats">
<a href="#10d1e4857ff564a998af058962245e8a5f430e6f">
tests/test_delete_output/Snakefile
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</li>
<li class="file-stats">
<a href="#f2270a7ec3265033808e07cedebf68ef8613b530">
<span class="new-file">
+
tests/test_directory/Snakefile
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</a>
</li>
<li class="file-stats">
<a href="#b73e7dc3a8a65f49217edaf72993d2c3d8c8e1ea">
<span class="new-file">
+
tests/test_directory/expected-results/child_to_input
</span>
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
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